Wall clock time and date at job start Tue Mar 31 2020 19:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00431 * 2 1 4 4 H 1.48504 * 109.46861 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47003 * 29.99707 * 3 2 1 6 6 H 1.48499 * 109.47122 * 149.99926 * 3 2 1 7 7 C 1.37877 * 119.99491 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00325 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47607 * 180.02562 * 9 7 2 11 11 C 1.46505 * 120.00080 * 84.99862 * 10 9 7 12 12 C 1.50703 * 109.47064 * 275.00439 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 S 1.65596 * 120.00265 * 265.00283 * 10 9 7 18 18 O 1.42101 * 104.27728 * 26.06466 * 17 10 9 19 19 O 1.42101 * 104.28108 * 153.92463 * 17 10 9 20 20 C 1.81403 * 104.45087 * 269.99629 * 17 10 9 21 21 C 1.52992 * 109.47390 * 179.97438 * 20 17 10 22 22 C 1.53004 * 109.47498 * 179.97438 * 21 20 17 23 23 C 1.52992 * 109.47498 * 179.97438 * 22 21 20 24 24 Cl 1.80299 * 109.47259 * 180.02562 * 23 22 21 25 25 H 0.97007 * 119.99732 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47463 * 59.99799 * 9 7 2 27 27 H 1.09004 * 109.47217 * 300.00558 * 9 7 2 28 28 H 1.09002 * 109.47068 * 35.00407 * 11 10 9 29 29 H 1.09001 * 109.47372 * 155.00495 * 11 10 9 30 30 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 31 31 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 32 32 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47162 * 299.99966 * 20 17 10 34 34 H 1.09000 * 109.47109 * 59.99791 * 20 17 10 35 35 H 1.09000 * 109.47252 * 300.00292 * 21 20 17 36 36 H 1.09007 * 109.47178 * 59.99755 * 21 20 17 37 37 H 1.09000 * 109.47245 * 300.00465 * 22 21 20 38 38 H 1.09005 * 109.46462 * 60.00362 * 22 21 20 39 39 H 1.09000 * 109.47252 * 300.00461 * 23 22 21 40 40 H 1.09000 * 109.46854 * 60.00185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2027 -3.6127 0.0027 11 6 2.7628 -4.0966 1.2671 12 6 3.9610 -3.2613 1.6380 13 6 3.9388 -2.1400 2.3808 14 6 5.2746 -1.6875 2.4793 15 6 6.0333 -2.5596 1.7915 16 8 5.2329 -3.5134 1.2879 17 16 2.6458 -4.3246 -1.4253 18 8 2.4607 -3.3049 -2.3975 19 8 3.9349 -4.8623 -1.1638 20 6 1.4367 -5.6562 -1.6616 21 6 1.7427 -6.3977 -2.9644 22 6 0.7233 -7.5212 -3.1633 23 6 1.0289 -8.2622 -4.4665 24 17 -0.1729 -9.5857 -4.7013 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8879 27 1 0.6245 -2.5563 0.8919 28 1 2.0095 -4.0197 2.0511 29 1 3.0661 -5.1376 1.1554 30 1 3.0679 -1.6752 2.8186 31 1 5.6197 -0.8100 3.0060 32 1 7.1049 -2.5045 1.6682 33 1 1.4946 -6.3522 -0.8247 34 1 0.4341 -5.2317 -1.7124 35 1 1.6845 -5.7014 -3.8010 36 1 2.7455 -6.8221 -2.9140 37 1 0.7819 -8.2173 -2.3267 38 1 -0.2796 -7.0970 -3.2136 39 1 0.9700 -7.5658 -5.3029 40 1 2.0318 -8.6863 -4.4167 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228327734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:54 Heat of formation + Delta-G solvation = -96.428729 kcal Electronic energy + Delta-G solvation = -25193.335470 eV Core-core repulsion = 21354.894448 eV Total energy + Delta-G solvation = -3838.441022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.079 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.26072 -38.05271 -37.53974 -37.42160 -36.79963 -36.11760 -34.56650 -33.68436 -31.36705 -31.12097 -29.01422 -26.34126 -25.18927 -24.19046 -22.48404 -22.33280 -21.37456 -19.71518 -18.73144 -18.45892 -18.08427 -17.30292 -17.23023 -16.85316 -16.51817 -16.30566 -15.57778 -15.46240 -15.15268 -14.77673 -14.43574 -14.39332 -14.12568 -13.73521 -13.58041 -13.38873 -13.27795 -13.14236 -13.07206 -12.93460 -12.91373 -12.86607 -12.66377 -12.40305 -12.38024 -11.88272 -11.84654 -11.81000 -11.63818 -11.23671 -11.18872 -10.63536 -10.52427 -9.90924 -9.21021 -8.14565 -6.19203 -0.64424 0.94016 1.35910 1.37322 1.38961 1.48040 1.74666 2.04398 2.31813 2.44043 3.06021 3.18234 3.29337 3.46983 3.78175 3.89795 4.01175 4.02411 4.08754 4.18156 4.30513 4.40218 4.50751 4.55993 4.60001 4.60523 4.78374 4.84266 5.05885 5.06240 5.19659 5.20832 5.24583 5.37862 5.48774 5.74120 5.77015 5.91110 6.20957 6.41899 6.87120 7.46812 8.93233 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.003436 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.844355 B = 8147.239142 C = 9513.595801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.935 3.065 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.044 0.956 9 C 0.267 3.733 10 N -0.988 5.988 11 C 0.206 3.794 12 C -0.043 4.043 13 C -0.191 4.191 14 C -0.236 4.236 15 C -0.054 4.054 16 O -0.184 6.184 17 S 2.587 3.413 18 O -0.994 6.994 19 O -0.983 6.983 20 C -0.604 4.604 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.034 4.034 24 Cl -0.206 7.206 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.039 0.961 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.233 0.767 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -16.369 -0.708 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.556 4.556 8 H 0.063 0.937 9 C 0.144 3.856 10 N -0.824 5.824 11 C 0.080 3.920 12 C -0.094 4.094 13 C -0.211 4.211 14 C -0.255 4.255 15 C -0.121 4.121 16 O -0.080 6.080 17 S 2.686 3.314 18 O -0.984 6.984 19 O -0.974 6.974 20 C -0.737 4.737 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.097 4.097 24 Cl -0.180 7.180 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.146 0.854 29 H 0.132 0.868 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.250 0.750 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.896 -16.303 -1.416 16.822 hybrid contribution -0.228 1.491 0.216 1.524 sum 3.668 -14.812 -1.200 15.306 Atomic orbital electron populations 1.69969 1.06659 1.27492 1.52415 1.25469 0.95527 1.01610 0.95528 0.85896 0.79264 0.80777 0.77894 1.21192 1.20141 1.19481 1.21685 0.93061 0.92119 1.48713 0.93743 1.18742 0.86856 0.82519 0.97499 1.57507 1.58494 1.45709 1.20717 1.19810 0.88842 0.95708 0.87604 1.23288 0.84367 1.00717 1.01051 1.21691 0.98203 0.97027 1.04182 1.22107 0.93504 1.03266 1.06633 1.24678 0.98023 0.89769 0.99653 1.84080 1.17421 1.45674 1.60823 1.05497 0.76410 0.76264 0.73249 1.93567 1.87303 1.56260 1.61302 1.93538 1.37833 1.81675 1.84309 1.30460 1.17944 1.16928 1.08342 1.21419 1.01795 0.98451 0.94340 1.21822 0.99709 0.96651 0.97434 1.24572 0.94046 0.90434 1.00628 1.98724 1.64759 1.56724 1.97811 0.92760 0.95782 0.94337 0.85438 0.86773 0.84234 0.82401 0.75040 0.81610 0.83517 0.90238 0.88915 0.89066 0.90069 0.87745 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.90 13.29 21.45 0.28 -52.61 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.93 45.24 29.54 68.60 2.03 47.27 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.52 -28.27 8.29 25.60 0.21 -28.06 16 8 H 0.04 2.57 6.83 -2.91 -0.02 2.55 16 9 C 0.27 12.49 5.03 85.63 0.43 12.92 16 10 N -0.99 -37.15 2.72 -523.91 -1.42 -38.57 16 11 C 0.21 6.50 5.81 85.63 0.50 7.00 16 12 C -0.04 -1.60 6.21 24.83 0.15 -1.45 16 13 C -0.19 -7.32 9.43 22.19 0.21 -7.11 16 14 C -0.24 -8.08 10.91 22.19 0.24 -7.84 16 15 C -0.05 -1.72 12.09 66.97 0.81 -0.91 16 16 O -0.18 -7.00 10.65 -2.58 -0.03 -7.03 16 17 S 2.59 90.55 5.32 -56.49 -0.30 90.25 16 18 O -0.99 -45.63 16.99 -127.65 -2.17 -47.79 16 19 O -0.98 -37.22 16.99 -127.65 -2.17 -39.39 16 20 C -0.60 -12.47 6.18 71.98 0.44 -12.02 16 21 C -0.12 -2.11 5.22 30.59 0.16 -1.95 16 22 C -0.12 -1.58 5.34 30.59 0.16 -1.41 16 23 C -0.03 -0.42 6.66 71.98 0.48 0.06 16 24 Cl -0.21 -3.42 29.15 -2.72 -0.08 -3.50 16 25 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 26 H 0.02 1.20 7.61 -2.39 -0.02 1.18 16 27 H 0.04 1.78 8.00 -2.39 -0.02 1.76 16 28 H 0.13 3.36 8.00 -2.39 -0.02 3.34 16 29 H 0.11 2.79 7.61 -2.39 -0.02 2.77 16 30 H 0.14 5.46 8.06 -2.91 -0.02 5.44 16 31 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.23 5.10 8.06 -2.91 -0.02 5.08 16 33 H 0.17 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.17 368.24 1.44 -75.73 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.03 Total: 14.99 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 4.26 Total: -39.34 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -1.14 Total: -91.18 kcal Atomic # 8 Polarization: -89.85 SS G_CDS: -4.36 Total: -94.21 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 90.55 SS G_CDS: -0.30 Total: 90.25 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.08 Total: -3.50 kcal Total: -77.17 1.44 -75.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228327734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.698 kcal (2) G-P(sol) polarization free energy of solvation -77.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds