Wall clock time and date at job start Tue Mar 31 2020 19:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46810 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54409 * 291.62399 * 11 10 9 13 13 O 1.42103 * 110.54456 * 68.37178 * 11 10 9 14 14 N 1.65601 * 104.44938 * 179.97438 * 11 10 9 15 15 C 1.46505 * 119.99942 * 65.00328 * 14 11 10 16 16 H 1.08999 * 109.46809 * 24.99498 * 15 14 11 17 17 C 1.52994 * 109.46619 * 264.99987 * 15 14 11 18 18 O 1.42909 * 109.47059 * 294.99905 * 17 15 14 19 19 C 1.50695 * 109.47180 * 144.99842 * 15 14 11 20 20 C 1.38423 * 120.02783 * 44.72181 * 19 15 14 21 21 F 1.35101 * 120.00607 * 0.02562 * 20 19 15 22 22 C 1.38469 * 119.97489 * 179.74922 * 20 19 15 23 23 C 1.38208 * 120.02538 * 0.52370 * 22 20 19 24 24 C 1.38203 * 120.05037 * 359.74864 * 23 22 20 25 25 C 1.38421 * 120.02437 * 224.99896 * 19 15 14 26 26 F 1.35098 * 120.01121 * 359.97438 * 25 19 15 27 27 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 29 29 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 30 30 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 31 31 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 32 32 H 0.97000 * 120.00249 * 244.99577 * 14 11 10 33 33 H 1.09006 * 109.47785 * 54.99788 * 17 15 14 34 34 H 1.09003 * 109.47210 * 175.00166 * 17 15 14 35 35 H 0.96705 * 113.99677 * 180.02562 * 18 17 15 36 36 H 1.08004 * 119.98601 * 180.27866 * 22 20 19 37 37 H 1.07996 * 119.97589 * 179.72842 * 23 22 20 38 38 H 1.08003 * 119.98857 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3382 -5.2331 0.0034 12 8 0.6638 -5.4190 1.2402 13 8 0.6646 -5.4205 -1.2337 14 7 2.5204 -6.3927 0.0038 15 6 3.4188 -6.5225 1.1537 16 1 2.9280 -6.1301 2.0443 17 6 4.7026 -5.7334 0.8893 18 8 5.4054 -6.3207 -0.2077 19 6 3.7569 -7.9757 1.3655 20 6 4.0919 -8.7736 0.2851 21 9 4.1164 -8.2496 -0.9599 22 6 4.4075 -10.1074 0.4816 23 6 4.3775 -10.6449 1.7545 24 6 4.0377 -9.8507 2.8333 25 6 3.7272 -8.5151 2.6399 26 9 3.3955 -7.7388 3.6947 27 1 -0.4851 0.8400 -0.0004 28 1 0.6240 -2.5576 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 2.8719 -3.6036 0.8927 31 1 2.8719 -3.6052 -0.8873 32 1 2.6180 -6.9861 -0.7573 33 1 4.4513 -4.7004 0.6486 34 1 5.3328 -5.7562 1.7785 35 1 6.2317 -5.8709 -0.4315 36 1 4.6732 -10.7290 -0.3607 37 1 4.6195 -11.6864 1.9063 38 1 4.0142 -10.2718 3.8276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269777504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:03 Heat of formation + Delta-G solvation = -186.996628 kcal Electronic energy + Delta-G solvation = -27565.282309 eV Core-core repulsion = 23171.117288 eV Total energy + Delta-G solvation = -4394.165021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.23700 -49.09674 -39.40200 -37.51057 -36.56596 -35.46525 -34.95939 -33.91868 -31.27352 -31.19720 -30.55132 -28.17368 -25.64693 -24.03713 -23.15366 -21.70532 -21.42298 -19.20660 -18.42444 -18.01037 -17.23254 -17.14442 -16.89341 -16.38748 -16.06300 -15.74985 -15.67436 -15.40345 -15.33146 -14.96655 -14.80764 -14.56888 -14.40589 -13.83506 -13.38140 -13.24555 -12.94968 -12.52854 -12.42412 -12.25324 -12.05525 -11.78823 -11.74296 -11.59498 -11.50943 -11.23286 -11.08215 -10.99340 -10.45838 -10.40746 -10.13539 -9.85839 -9.57314 -9.17166 -9.08437 -8.99301 -8.51076 -6.13197 -4.19140 0.59422 0.71756 0.83179 2.96697 3.18015 3.26087 3.31150 3.32661 3.65609 3.94949 4.13454 4.15885 4.22426 4.36435 4.43405 4.47219 4.66871 4.82570 4.95307 5.03925 5.17365 5.21799 5.30033 5.46079 5.48942 5.59483 5.67819 5.68701 5.73768 5.84196 5.98879 6.45786 6.47750 7.09926 7.28701 7.35194 7.48382 7.78911 8.15920 8.83726 9.45535 10.97825 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.003289 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.815680 B = 8511.484492 C = 8583.901679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.588 3.412 12 O -0.965 6.965 13 O -0.962 6.962 14 N -1.117 6.117 15 C 0.195 3.805 16 H 0.121 0.879 17 C 0.052 3.948 18 O -0.558 6.558 19 C -0.158 4.158 20 C 0.166 3.834 21 F -0.109 7.109 22 C -0.173 4.173 23 C -0.061 4.061 24 C -0.170 4.170 25 C 0.139 3.861 26 F -0.125 7.125 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.417 0.583 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.379 0.621 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.557 -20.915 3.902 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.685 3.315 12 O -0.955 6.955 13 O -0.953 6.953 14 N -0.876 5.876 15 C 0.086 3.914 16 H 0.139 0.861 17 C -0.027 4.027 18 O -0.363 6.363 19 C -0.161 4.161 20 C 0.146 3.854 21 F -0.087 7.087 22 C -0.192 4.192 23 C -0.079 4.079 24 C -0.189 4.189 25 C 0.119 3.881 26 F -0.104 7.104 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.255 0.745 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.883 -21.247 4.049 24.678 hybrid contribution 1.553 1.649 -0.306 2.286 sum 13.436 -19.597 3.743 24.054 Atomic orbital electron populations 1.69942 1.06118 1.27344 1.49373 1.25066 0.94971 0.99526 0.94887 0.86526 0.79493 0.82551 0.78665 1.20094 1.21067 1.20089 1.20946 0.92973 0.89750 1.52390 0.92119 1.18969 0.92664 0.90456 0.98975 1.30562 1.13743 1.18102 1.09973 1.05733 0.74744 0.76689 0.74315 1.93551 1.71280 1.84982 1.45654 1.93560 1.71457 1.85234 1.45033 1.56003 1.51694 1.52787 1.27103 1.19635 0.90207 0.91054 0.90482 0.86106 1.22892 0.92916 0.96792 0.90142 1.86543 1.39790 1.58140 1.51842 1.19825 1.07150 0.97110 0.92024 1.17075 0.97733 0.91039 0.79592 1.91474 1.92902 1.86524 1.37815 1.21230 1.04974 0.93770 0.99208 1.20841 0.96148 1.00054 0.90841 1.21161 1.04492 0.91949 1.01273 1.17215 0.99009 0.89090 0.82806 1.91554 1.89584 1.74512 1.54718 0.92439 0.94764 0.94765 0.86385 0.85839 0.74502 0.91307 0.92279 0.77426 0.84002 0.83990 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.28 5.04 37.16 0.19 -11.09 16 11 S 2.59 48.51 5.44 -107.50 -0.58 47.92 16 12 O -0.96 -20.56 17.39 -57.54 -1.00 -21.56 16 13 O -0.96 -20.93 18.08 -57.54 -1.04 -21.97 16 14 N -1.12 -16.63 5.19 -5.88 -0.03 -16.66 16 15 C 0.19 2.54 2.73 -69.08 -0.19 2.36 16 16 H 0.12 1.61 6.61 -51.93 -0.34 1.26 16 17 C 0.05 0.56 6.86 37.15 0.25 0.82 16 18 O -0.56 -5.71 10.53 -35.23 -0.37 -6.08 16 19 C -0.16 -1.88 4.89 -104.49 -0.51 -2.39 16 20 C 0.17 1.84 6.35 -39.43 -0.25 1.59 16 21 F -0.11 -1.34 12.56 2.25 0.03 -1.31 16 22 C -0.17 -1.43 10.02 -39.51 -0.40 -1.82 16 23 C -0.06 -0.41 10.04 -39.61 -0.40 -0.81 16 24 C -0.17 -1.37 10.02 -39.51 -0.40 -1.77 16 25 C 0.14 1.52 7.25 -39.43 -0.29 1.23 16 26 F -0.13 -1.50 16.27 2.25 0.04 -1.46 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.96 6.88 -51.92 -0.36 1.60 16 31 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 32 H 0.42 5.96 6.15 -34.47 -0.21 5.74 16 33 H 0.07 0.74 5.73 -51.93 -0.30 0.45 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.38 2.37 9.12 45.56 0.42 2.78 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -36.25 339.64 -7.96 -44.21 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.30 Total: 5.80 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.53 Total: -24.36 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.71 Total: -42.37 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.41 Total: -49.61 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.06 Total: -2.77 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 48.51 SS G_CDS: -0.58 Total: 47.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.25 -7.96 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269777504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.791 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds