Wall clock time and date at job start Tue Mar 31 2020 19:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99783 * 2 1 4 4 H 1.48503 * 109.47121 * 269.99791 * 3 2 1 5 5 H 1.48499 * 109.47459 * 30.00020 * 3 2 1 6 6 H 1.48502 * 109.47070 * 150.00333 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99810 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46732 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46675 * 179.97438 * 10 9 7 12 12 O 1.42091 * 110.54370 * 68.37452 * 11 10 9 13 13 O 1.42103 * 110.54515 * 291.61968 * 11 10 9 14 14 N 1.65605 * 104.44727 * 180.02562 * 11 10 9 15 15 C 1.46501 * 120.00036 * 64.99806 * 14 11 10 16 16 H 1.08995 * 109.47198 * 334.99758 * 15 14 11 17 17 C 1.53000 * 109.46666 * 95.00159 * 15 14 11 18 18 O 1.42904 * 109.47244 * 65.00139 * 17 15 14 19 19 C 1.50698 * 109.46923 * 214.99959 * 15 14 11 20 20 C 1.38415 * 120.02708 * 135.00275 * 19 15 14 21 21 F 1.35099 * 120.00946 * 359.97438 * 20 19 15 22 22 C 1.38474 * 119.97981 * 179.97438 * 20 19 15 23 23 C 1.38210 * 120.02023 * 0.28104 * 22 20 19 24 24 C 1.38201 * 120.05118 * 359.44081 * 23 22 20 25 25 C 1.38420 * 120.02535 * 314.97782 * 19 15 14 26 26 F 1.35097 * 120.01373 * 0.02562 * 25 19 15 27 27 H 0.97002 * 119.99937 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47409 * 59.99919 * 9 7 2 29 29 H 1.09004 * 109.46445 * 299.99905 * 9 7 2 30 30 H 1.08998 * 109.47506 * 60.00174 * 10 9 7 31 31 H 1.08996 * 109.47212 * 299.99307 * 10 9 7 32 32 H 0.97002 * 119.99949 * 244.99801 * 14 11 10 33 33 H 1.09004 * 109.46495 * 184.99778 * 17 15 14 34 34 H 1.08996 * 109.47659 * 304.99608 * 17 15 14 35 35 H 0.96701 * 113.99647 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.98641 * 179.97438 * 22 20 19 37 37 H 1.08000 * 119.96986 * 179.70463 * 23 22 20 38 38 H 1.08002 * 119.98829 * 180.25980 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 16 5.8356 -2.6364 0.0009 12 8 6.3343 -2.1461 1.2378 13 8 6.3342 -2.1460 -1.2361 14 7 6.2489 -4.2400 0.0001 15 6 5.9123 -5.0826 -1.1502 16 1 5.0559 -4.6577 -1.6736 17 6 7.1093 -5.1494 -2.1008 18 8 8.1965 -5.8120 -1.4520 19 6 5.5715 -6.4709 -0.6733 20 6 4.4625 -7.1250 -1.1813 21 9 3.6847 -6.5188 -2.1048 22 6 4.1505 -8.4009 -0.7428 23 6 4.9427 -9.0189 0.2061 24 6 6.0536 -8.3691 0.7099 25 6 6.3675 -7.0932 0.2728 26 9 7.4503 -6.4560 0.7696 27 1 -0.4850 0.8401 0.0004 28 1 3.8746 -0.6800 0.8910 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1501 -0.8892 31 1 3.6580 -3.1505 0.8907 32 1 6.7137 -4.6215 0.7612 33 1 6.8302 -5.7021 -2.9980 34 1 7.4117 -4.1390 -2.3760 35 1 8.9910 -5.8908 -1.9976 36 1 3.2849 -8.9112 -1.1389 37 1 4.6959 -10.0121 0.5511 38 1 6.6743 -8.8547 1.4484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269777505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:05 Heat of formation + Delta-G solvation = -211.901409 kcal Electronic energy + Delta-G solvation = -27692.372855 eV Core-core repulsion = 23297.127882 eV Total energy + Delta-G solvation = -4395.244973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.06025 -49.91884 -40.15996 -38.45641 -38.06414 -37.10897 -35.98124 -35.92173 -33.51001 -32.15191 -31.21565 -29.06247 -27.93764 -24.80720 -23.89936 -23.21303 -22.37428 -20.54473 -19.57375 -19.18724 -18.84656 -18.25113 -17.97349 -17.61510 -17.12895 -16.95727 -16.74716 -16.51902 -16.38268 -16.18485 -16.13632 -15.61614 -15.35924 -15.18618 -14.84441 -14.66291 -14.24148 -13.82043 -13.64595 -13.36782 -13.26709 -13.19526 -13.14304 -13.09408 -13.00434 -12.77276 -12.71147 -12.31289 -12.15382 -11.97661 -11.73085 -11.38123 -10.94816 -10.85164 -10.61605 -9.91306 -9.68796 -8.37339 -6.43414 -0.82820 -0.03857 0.03782 1.31577 1.33416 1.43668 1.64893 2.28928 2.41989 2.64623 2.91996 2.96461 3.11939 3.14420 3.34364 3.45687 3.66202 3.79057 3.90651 3.92981 4.04931 4.18657 4.25711 4.34092 4.52328 4.62695 4.70348 4.84005 4.95404 5.03228 5.04304 5.07615 5.12282 5.24683 5.45224 5.81181 5.90341 6.15593 6.62278 6.88664 7.20921 8.78275 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.003966 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.882933 B = 7057.430437 C = 8013.379449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.925 3.075 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.528 4.528 8 H 0.048 0.952 9 C -0.015 4.015 10 C -0.590 4.590 11 S 2.618 3.382 12 O -0.989 6.989 13 O -0.980 6.980 14 N -1.102 6.102 15 C 0.187 3.813 16 H 0.113 0.887 17 C 0.064 3.936 18 O -0.569 6.569 19 C -0.178 4.178 20 C 0.117 3.883 21 F -0.139 7.139 22 C -0.164 4.164 23 C -0.046 4.046 24 C -0.166 4.166 25 C 0.144 3.856 26 F -0.122 7.122 27 H 0.270 0.730 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.423 0.577 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.394 0.606 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.783 -22.251 -2.567 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.747 3.253 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.055 4.055 10 C -0.721 4.721 11 S 2.714 3.286 12 O -0.980 6.980 13 O -0.970 6.970 14 N -0.864 5.864 15 C 0.080 3.920 16 H 0.130 0.870 17 C -0.016 4.016 18 O -0.377 6.377 19 C -0.181 4.181 20 C 0.096 3.904 21 F -0.117 7.117 22 C -0.182 4.182 23 C -0.064 4.064 24 C -0.185 4.185 25 C 0.124 3.876 26 F -0.101 7.101 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.262 0.738 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.182 0.818 37 H 0.199 0.801 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.784 -21.312 -2.246 26.035 hybrid contribution -0.169 0.867 -0.317 0.939 sum 14.614 -20.445 -2.563 25.261 Atomic orbital electron populations 1.70008 1.07888 1.28425 1.51563 1.25858 0.95628 1.02972 0.93877 0.86029 0.79898 0.79368 0.79980 1.18341 1.19827 1.17388 1.21145 0.90121 0.93908 1.51534 0.93327 1.19371 0.97351 0.90692 0.98046 1.30313 1.22916 1.06524 1.12386 1.04639 0.77872 0.72794 0.73291 1.93522 1.79306 1.78898 1.46252 1.93519 1.78233 1.79055 1.46181 1.55585 1.73908 1.28634 1.28301 1.19815 0.97966 0.87773 0.86489 0.86976 1.22626 0.87212 0.97760 0.93987 1.86496 1.25322 1.80408 1.45483 1.19794 0.97989 0.97795 1.02543 1.17502 0.89434 0.92916 0.90499 1.91526 1.73322 1.83376 1.63507 1.21542 1.03382 0.92976 1.00341 1.21323 0.91309 1.01029 0.92731 1.21585 1.00584 0.92898 1.03429 1.17337 0.84190 0.91870 0.94173 1.91433 1.51936 1.81292 1.85395 0.92070 0.94907 0.94706 0.84349 0.84310 0.73788 0.90627 0.92088 0.75613 0.81766 0.80084 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.04 13.96 21.45 0.30 -57.75 16 2 C 0.02 0.89 5.47 84.65 0.46 1.36 16 3 Si 0.92 44.10 27.47 68.60 1.88 45.98 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 7 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 9 C -0.02 -0.74 4.05 29.85 0.12 -0.62 16 10 C -0.59 -22.03 5.90 71.98 0.42 -21.61 16 11 S 2.62 90.92 5.38 -56.49 -0.30 90.62 16 12 O -0.99 -39.98 18.08 -127.65 -2.31 -42.29 16 13 O -0.98 -37.39 17.05 -127.65 -2.18 -39.56 16 14 N -1.10 -30.65 5.19 -172.53 -0.90 -31.55 16 15 C 0.19 4.61 2.59 44.24 0.11 4.72 16 16 H 0.11 2.69 6.28 -2.39 -0.02 2.68 16 17 C 0.06 1.37 6.87 71.98 0.49 1.87 16 18 O -0.57 -11.14 10.50 -148.98 -1.56 -12.70 16 19 C -0.18 -3.89 4.89 -19.78 -0.10 -3.99 16 20 C 0.12 2.35 7.24 22.37 0.16 2.51 16 21 F -0.14 -3.25 16.27 44.97 0.73 -2.51 16 22 C -0.16 -2.24 10.03 22.32 0.22 -2.02 16 23 C -0.05 -0.46 10.04 22.25 0.22 -0.23 16 24 C -0.17 -2.21 10.02 22.32 0.22 -1.99 16 25 C 0.14 2.88 6.35 22.37 0.14 3.02 16 26 F -0.12 -2.80 12.55 44.97 0.56 -2.24 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.03 1.56 7.20 -2.39 -0.02 1.54 16 29 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 30 H 0.14 4.68 7.44 -2.39 -0.02 4.66 16 31 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 32 H 0.42 11.28 6.18 -96.74 -0.60 10.68 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 1.46 7.36 -2.39 -0.02 1.45 16 35 H 0.39 4.30 9.12 -74.06 -0.68 3.63 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -78.12 338.22 -1.22 -79.34 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.20 Total: 19.59 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 2.74 Total: -46.92 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -0.60 Total: -89.29 kcal Atomic # 8 Polarization: -88.51 SS G_CDS: -6.05 Total: -94.56 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 1.30 Total: -4.75 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Atomic # 16 Polarization: 90.92 SS G_CDS: -0.30 Total: 90.62 kcal Total: -78.12 -1.22 -79.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269777505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.563 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds