Wall clock time and date at job start Tue Mar 31 2020 19:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99742 * 2 1 4 4 H 1.48507 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47325 * 59.99955 * 3 2 1 7 7 C 1.37875 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47050 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47347 * 180.02562 * 10 9 7 12 12 S 1.65597 * 120.00240 * 165.00292 * 11 10 9 13 13 O 1.42107 * 106.39993 * 311.45942 * 12 11 10 14 14 O 1.42099 * 106.40248 * 178.54251 * 12 11 10 15 15 C 1.76199 * 107.22072 * 64.99824 * 12 11 10 16 16 C 1.38271 * 119.94634 * 270.30507 * 15 12 11 17 17 C 1.38138 * 120.05803 * 180.30266 * 16 15 12 18 18 C 1.38736 * 119.94337 * 359.41293 * 17 16 15 19 19 O 1.35893 * 120.05957 * 180.30421 * 18 17 16 20 20 C 1.42899 * 117.00392 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47433 * 179.97438 * 20 19 18 22 22 F 1.39894 * 109.46990 * 300.00253 * 21 20 19 23 23 F 1.39904 * 109.46718 * 59.99947 * 21 20 19 24 24 C 1.38740 * 119.88595 * 0.28279 * 18 17 16 25 25 C 1.38146 * 119.94197 * 359.97438 * 24 18 17 26 26 H 0.96999 * 119.99973 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46619 * 60.00012 * 9 7 2 28 28 H 1.08995 * 109.47242 * 299.99913 * 9 7 2 29 29 H 1.09000 * 109.47163 * 59.99869 * 10 9 7 30 30 H 1.09006 * 109.47673 * 300.00313 * 10 9 7 31 31 H 0.96998 * 119.99677 * 344.99954 * 11 10 9 32 32 H 1.08004 * 119.97370 * 0.02562 * 16 15 12 33 33 H 1.08002 * 120.03311 * 179.69762 * 17 16 15 34 34 H 1.09002 * 109.46729 * 299.99846 * 20 19 18 35 35 H 1.09001 * 109.47001 * 59.99870 * 20 19 18 36 36 H 1.08995 * 109.46775 * 179.97438 * 21 20 19 37 37 H 1.07993 * 120.02463 * 180.02562 * 24 18 17 38 38 H 1.08006 * 119.96944 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 16 2.2988 -6.3404 -0.3713 13 8 3.0289 -6.0904 -1.5646 14 8 1.3368 -7.3795 -0.2521 15 6 3.4932 -6.6204 0.8934 16 6 4.7703 -6.1068 0.7626 17 6 5.7104 -6.3303 1.7498 18 6 5.3686 -7.0603 2.8790 19 8 6.2898 -7.2763 3.8544 20 6 5.8680 -8.0369 4.9883 21 6 7.0320 -8.1749 5.9716 22 9 8.0984 -8.8269 5.3432 23 9 7.4430 -6.9044 6.3890 24 6 4.0847 -7.5692 3.0108 25 6 3.1498 -7.3474 2.0182 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8894 31 1 0.5677 -4.9452 0.2170 32 1 5.0345 -5.5343 -0.1143 33 1 6.7092 -5.9331 1.6449 34 1 5.0368 -7.5290 5.4776 35 1 5.5482 -9.0269 4.6631 36 1 6.7100 -8.7547 6.8366 37 1 3.8162 -8.1374 3.8890 38 1 2.1503 -7.7437 2.1201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273567535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:27 Heat of formation + Delta-G solvation = -196.706999 kcal Electronic energy + Delta-G solvation = -25903.413256 eV Core-core repulsion = 21508.827162 eV Total energy + Delta-G solvation = -4394.586094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.43674 -47.46570 -40.59198 -37.90566 -37.02834 -35.63078 -35.39817 -32.75294 -31.88496 -31.16015 -29.82911 -29.14565 -24.56634 -24.47587 -23.28934 -22.36747 -21.16049 -19.36226 -19.17796 -18.03604 -17.99624 -17.41644 -17.36942 -16.95011 -16.31082 -16.11320 -15.94157 -15.37277 -14.86879 -14.58345 -14.31577 -14.21469 -13.91483 -13.83631 -13.80961 -13.73420 -13.31972 -13.19178 -12.84228 -12.56324 -11.91526 -11.86956 -11.81243 -11.76202 -11.65584 -11.31470 -11.29376 -11.14538 -10.90031 -10.61291 -10.47516 -9.60736 -9.37758 -9.27406 -8.99188 -8.87547 -8.42701 -6.09560 -4.12931 0.52668 0.78689 1.02057 2.29514 3.09646 3.15662 3.27651 3.35454 3.39000 3.45696 3.54454 3.81712 3.97057 4.22127 4.31789 4.34481 4.40352 4.55447 4.65805 4.70837 4.98269 5.11805 5.26581 5.27522 5.61169 5.66415 5.75472 5.84167 5.91960 6.17426 6.29700 6.45693 6.70364 6.79999 7.39043 7.54643 7.63548 7.89142 8.26598 8.93223 9.51960 11.01883 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.002879 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.329433 B = 9724.591778 C =11630.913360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.118 3.882 11 N -1.111 6.111 12 S 2.696 3.304 13 O -0.960 6.960 14 O -0.972 6.972 15 C -0.707 4.707 16 C 0.023 3.977 17 C -0.166 4.166 18 C 0.176 3.824 19 O -0.299 6.299 20 C 0.001 3.999 21 C 0.274 3.726 22 F -0.197 7.197 23 F -0.196 7.196 24 C -0.232 4.232 25 C 0.023 3.977 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.417 0.583 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 -19.195 12.027 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.007 4.007 11 N -0.872 5.872 12 S 2.785 3.215 13 O -0.950 6.950 14 O -0.963 6.963 15 C -0.793 4.793 16 C 0.004 3.996 17 C -0.186 4.186 18 C 0.130 3.870 19 O -0.212 6.212 20 C -0.076 4.076 21 C 0.220 3.780 22 F -0.179 7.179 23 F -0.177 7.177 24 C -0.252 4.252 25 C 0.004 3.996 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.455 -19.533 11.285 24.863 hybrid contribution 0.314 1.053 0.994 1.482 sum 10.769 -18.480 12.279 24.663 Atomic orbital electron populations 1.69967 1.06094 1.26769 1.50325 1.25005 0.94879 0.99398 0.95026 0.86483 0.80131 0.83456 0.77617 1.19584 1.20923 1.21007 1.21127 0.93245 0.90481 1.51395 0.92174 1.19287 0.94063 0.90545 0.98226 1.21670 0.96137 0.82550 1.00366 1.55495 1.21430 1.22155 1.88154 1.01739 0.73248 0.72556 0.73986 1.93578 1.73708 1.85096 1.42569 1.93548 1.60063 1.55481 1.87167 1.31051 1.14072 1.15068 1.19072 1.20852 0.90199 0.91594 0.96981 1.20569 1.01744 1.03274 0.92993 1.19235 0.87676 0.92331 0.87744 1.86157 1.37620 1.69190 1.28249 1.24132 0.97723 0.98650 0.87050 1.22024 0.83102 0.78976 0.93854 1.93035 1.59488 1.80967 1.84369 1.93050 1.91628 1.42079 1.90951 1.21283 0.93479 1.07934 1.02482 1.20701 0.99145 0.90135 0.89646 0.92878 0.95531 0.95794 0.92951 0.91247 0.74838 0.83095 0.83997 0.88323 0.88459 0.84931 0.84695 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.42 5.11 -27.89 -0.14 0.28 16 10 C 0.12 2.24 6.16 -4.04 -0.02 2.22 16 11 N -1.11 -17.88 6.00 -10.61 -0.06 -17.94 16 12 S 2.70 41.12 5.73 -107.50 -0.62 40.50 16 13 O -0.96 -17.22 16.75 -57.17 -0.96 -18.18 16 14 O -0.97 -16.09 17.28 -57.17 -0.99 -17.08 16 15 C -0.71 -9.41 5.95 -39.56 -0.24 -9.65 16 16 C 0.02 0.29 9.51 -39.61 -0.38 -0.08 16 17 C -0.17 -1.96 9.99 -39.43 -0.39 -2.36 16 18 C 0.18 1.95 6.69 -39.21 -0.26 1.69 16 19 O -0.30 -3.05 10.02 -19.40 -0.19 -3.25 16 20 C 0.00 0.00 4.96 37.16 0.18 0.19 16 21 C 0.27 1.49 5.63 37.16 0.21 1.70 16 22 F -0.20 -1.65 17.28 2.25 0.04 -1.62 16 23 F -0.20 -1.72 17.28 2.25 0.04 -1.69 16 24 C -0.23 -2.31 9.04 -39.43 -0.36 -2.67 16 25 C 0.02 0.27 9.51 -39.61 -0.38 -0.11 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.33 7.75 -51.93 -0.40 0.92 16 31 H 0.42 6.18 8.65 -34.47 -0.30 5.88 16 32 H 0.15 1.79 7.62 -52.48 -0.40 1.39 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.10 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.10 0.34 7.66 -51.93 -0.40 -0.05 16 36 H 0.13 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 38 H 0.14 1.42 7.61 -52.48 -0.40 1.02 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -35.48 351.56 -8.20 -43.68 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.28 Total: 1.06 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.19 Total: -21.64 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.67 Total: -43.08 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -2.14 Total: -38.50 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 41.12 SS G_CDS: -0.62 Total: 40.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.48 -8.20 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273567535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.027 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds