Wall clock time and date at job start Tue Mar 31 2020 19:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99742 * 2 1 4 4 H 1.48507 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47325 * 59.99955 * 3 2 1 7 7 C 1.37875 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47050 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47347 * 180.02562 * 10 9 7 12 12 S 1.65597 * 120.00240 * 165.00292 * 11 10 9 13 13 O 1.42107 * 106.39993 * 311.45942 * 12 11 10 14 14 O 1.42099 * 106.40248 * 178.54251 * 12 11 10 15 15 C 1.76199 * 107.22072 * 64.99824 * 12 11 10 16 16 C 1.38271 * 119.94634 * 270.30507 * 15 12 11 17 17 C 1.38138 * 120.05803 * 180.30266 * 16 15 12 18 18 C 1.38736 * 119.94337 * 359.41293 * 17 16 15 19 19 O 1.35893 * 120.05957 * 180.30421 * 18 17 16 20 20 C 1.42899 * 117.00392 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47433 * 179.97438 * 20 19 18 22 22 F 1.39894 * 109.46990 * 300.00253 * 21 20 19 23 23 F 1.39904 * 109.46718 * 59.99947 * 21 20 19 24 24 C 1.38740 * 119.88595 * 0.28279 * 18 17 16 25 25 C 1.38146 * 119.94197 * 359.97438 * 24 18 17 26 26 H 0.96999 * 119.99973 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46619 * 60.00012 * 9 7 2 28 28 H 1.08995 * 109.47242 * 299.99913 * 9 7 2 29 29 H 1.09000 * 109.47163 * 59.99869 * 10 9 7 30 30 H 1.09006 * 109.47673 * 300.00313 * 10 9 7 31 31 H 0.96998 * 119.99677 * 344.99954 * 11 10 9 32 32 H 1.08004 * 119.97370 * 0.02562 * 16 15 12 33 33 H 1.08002 * 120.03311 * 179.69762 * 17 16 15 34 34 H 1.09002 * 109.46729 * 299.99846 * 20 19 18 35 35 H 1.09001 * 109.47001 * 59.99870 * 20 19 18 36 36 H 1.08995 * 109.46775 * 179.97438 * 21 20 19 37 37 H 1.07993 * 120.02463 * 180.02562 * 24 18 17 38 38 H 1.08006 * 119.96944 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 16 2.2988 -6.3404 -0.3713 13 8 3.0289 -6.0904 -1.5646 14 8 1.3368 -7.3795 -0.2521 15 6 3.4932 -6.6204 0.8934 16 6 4.7703 -6.1068 0.7626 17 6 5.7104 -6.3303 1.7498 18 6 5.3686 -7.0603 2.8790 19 8 6.2898 -7.2763 3.8544 20 6 5.8680 -8.0369 4.9883 21 6 7.0320 -8.1749 5.9716 22 9 8.0984 -8.8269 5.3432 23 9 7.4430 -6.9044 6.3890 24 6 4.0847 -7.5692 3.0108 25 6 3.1498 -7.3474 2.0182 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8894 31 1 0.5677 -4.9452 0.2170 32 1 5.0345 -5.5343 -0.1143 33 1 6.7092 -5.9331 1.6449 34 1 5.0368 -7.5290 5.4776 35 1 5.5482 -9.0269 4.6631 36 1 6.7100 -8.7547 6.8366 37 1 3.8162 -8.1374 3.8890 38 1 2.1503 -7.7437 2.1201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273567535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:26 Heat of formation + Delta-G solvation = -222.445421 kcal Electronic energy + Delta-G solvation = -25904.529358 eV Core-core repulsion = 21508.827162 eV Total energy + Delta-G solvation = -4395.702196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.93545 -47.99371 -41.35056 -38.69938 -38.34078 -36.99801 -36.93741 -34.71126 -32.58028 -31.93629 -30.98406 -30.51905 -26.40610 -25.12885 -24.17904 -23.07526 -22.91806 -20.57595 -19.85119 -19.10470 -18.52664 -18.51478 -18.14911 -18.00452 -17.80700 -17.03756 -16.71295 -16.51718 -16.33789 -15.74208 -15.57455 -15.44243 -14.87858 -14.73892 -14.60819 -14.41427 -14.36059 -14.20226 -13.94613 -13.40634 -13.36599 -13.25344 -13.22935 -13.13442 -12.98793 -12.48226 -12.40072 -12.33335 -12.22338 -12.01020 -11.90013 -11.48436 -11.27300 -10.61434 -10.30906 -10.22571 -9.76291 -8.19658 -6.29826 -0.61058 -0.21515 0.16775 1.43438 1.44910 1.57268 1.72487 2.00843 2.39169 2.45337 2.76067 2.78849 3.15605 3.26582 3.31635 3.46072 3.60613 3.74656 3.92871 4.05654 4.17560 4.24008 4.29641 4.34611 4.43094 4.56939 4.77804 4.83245 4.86700 4.97631 4.99878 5.06057 5.46253 5.52165 5.66061 5.83179 6.05936 6.06589 6.25160 6.86375 7.39500 8.92596 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.002879 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.329433 B = 9724.591778 C =11630.913360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.019 3.981 10 C 0.133 3.867 11 N -1.112 6.112 12 S 2.714 3.286 13 O -0.991 6.991 14 O -0.985 6.985 15 C -0.717 4.717 16 C 0.009 3.991 17 C -0.180 4.180 18 C 0.178 3.822 19 O -0.319 6.319 20 C -0.013 4.013 21 C 0.265 3.735 22 F -0.218 7.218 23 F -0.219 7.219 24 C -0.224 4.224 25 C 0.015 3.985 26 H 0.264 0.736 27 H 0.001 0.999 28 H 0.009 0.991 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.421 0.579 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.188 0.812 37 H 0.176 0.824 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -20.201 14.042 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.019 4.019 10 C 0.007 3.993 11 N -0.872 5.872 12 S 2.807 3.193 13 O -0.981 6.981 14 O -0.975 6.975 15 C -0.807 4.807 16 C -0.011 4.011 17 C -0.199 4.199 18 C 0.131 3.869 19 O -0.232 6.232 20 C -0.088 4.088 21 C 0.212 3.788 22 F -0.199 7.199 23 F -0.201 7.201 24 C -0.243 4.243 25 C -0.005 4.005 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.257 0.743 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.205 0.795 37 H 0.193 0.807 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.446 -20.544 13.278 27.007 hybrid contribution 0.049 1.250 0.482 1.340 sum 11.495 -19.294 13.761 26.339 Atomic orbital electron populations 1.70089 1.07719 1.27758 1.51530 1.25912 0.95725 1.03223 0.94714 0.85419 0.79271 0.78890 0.77592 1.18364 1.20746 1.20489 1.21610 0.93937 0.91757 1.50711 0.91389 1.19162 0.94499 0.92046 0.96217 1.21306 0.94933 0.81957 1.01100 1.55356 1.21884 1.21581 1.88414 1.00899 0.72921 0.71695 0.73771 1.93532 1.74188 1.85360 1.45034 1.93523 1.61009 1.55464 1.87531 1.30596 1.13434 1.17275 1.19350 1.20930 0.90405 0.92174 0.97560 1.20745 1.02029 1.03789 0.93371 1.19361 0.88288 0.91551 0.87653 1.86146 1.38073 1.69788 1.29146 1.24616 0.98589 0.99824 0.85803 1.22762 0.82169 0.78394 0.95448 1.92993 1.60707 1.81255 1.84984 1.93002 1.91905 1.43963 1.91196 1.21660 0.92366 1.07166 1.03120 1.21010 1.00391 0.89725 0.89324 0.92756 0.98090 0.97243 0.91326 0.91436 0.74303 0.83171 0.83141 0.86060 0.85740 0.79549 0.80680 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -29.28 9.11 25.60 0.23 -29.05 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.96 5.11 29.85 0.15 1.12 16 10 C 0.13 5.09 6.16 86.38 0.53 5.62 16 11 N -1.11 -35.98 6.00 -187.48 -1.12 -37.10 16 12 S 2.71 82.53 5.73 -56.49 -0.32 82.21 16 13 O -0.99 -36.07 16.75 -128.00 -2.14 -38.21 16 14 O -0.98 -32.10 17.28 -128.00 -2.21 -34.31 16 15 C -0.72 -18.42 5.95 22.28 0.13 -18.28 16 16 C 0.01 0.22 9.51 22.25 0.21 0.43 16 17 C -0.18 -4.05 9.99 22.37 0.22 -3.83 16 18 C 0.18 3.53 6.69 22.51 0.15 3.68 16 19 O -0.32 -5.71 10.02 -92.34 -0.93 -6.64 16 20 C -0.01 -0.10 4.96 71.98 0.36 0.26 16 21 C 0.27 2.10 5.63 71.98 0.41 2.50 16 22 F -0.22 -3.25 17.28 44.97 0.78 -2.48 16 23 F -0.22 -3.47 17.28 44.97 0.78 -2.70 16 24 C -0.22 -3.70 9.04 22.37 0.20 -3.50 16 25 C 0.01 0.31 9.51 22.25 0.21 0.52 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.61 7.75 -2.38 -0.02 2.59 16 31 H 0.42 12.68 8.65 -96.75 -0.84 11.85 16 32 H 0.15 3.62 7.62 -2.91 -0.02 3.60 16 33 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.12 0.41 7.66 -2.39 -0.02 0.39 16 35 H 0.12 0.29 7.66 -2.39 -0.02 0.28 16 36 H 0.19 -0.58 8.14 -2.39 -0.02 -0.59 16 37 H 0.18 1.35 6.30 -2.91 -0.02 1.33 16 38 H 0.16 2.74 7.61 -2.91 -0.02 2.72 16 Total: -1.00 -77.55 351.56 0.68 -76.87 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.27 Total: 11.81 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.27 Total: -39.93 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -0.84 Total: -91.64 kcal Atomic # 8 Polarization: -73.88 SS G_CDS: -5.28 Total: -79.16 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.55 Total: -5.17 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 82.53 SS G_CDS: -0.32 Total: 82.21 kcal Total: -77.55 0.68 -76.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273567535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.579 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds