Wall clock time and date at job start Tue Mar 31 2020 19:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48504 * 109.46940 * 239.99773 * 3 2 1 5 5 H 1.48498 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47414 * 120.00072 * 3 2 1 7 7 C 1.37882 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46919 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54001 * 68.37452 * 11 10 9 13 13 O 1.42094 * 110.54459 * 291.62427 * 11 10 9 14 14 N 1.65607 * 104.44904 * 179.97438 * 11 10 9 15 15 C 1.46926 * 120.62900 * 90.00281 * 14 11 10 16 16 C 1.53187 * 108.77227 * 233.33374 * 15 14 11 17 17 C 1.53038 * 109.31606 * 305.36475 * 16 15 14 18 18 H 1.09007 * 109.46056 * 301.36333 * 17 16 15 19 19 C 1.50696 * 109.46444 * 181.38763 * 17 16 15 20 20 O 1.20825 * 120.00353 * 240.00202 * 19 17 16 21 21 O 1.34234 * 119.99798 * 60.00133 * 19 17 16 22 22 C 1.53041 * 109.53768 * 61.36503 * 17 16 15 23 23 H 1.09004 * 109.49619 * 178.65630 * 22 17 16 24 24 C 1.50698 * 109.49420 * 58.59052 * 22 17 16 25 25 O 1.20823 * 120.00557 * 359.97438 * 24 22 17 26 26 O 1.34234 * 119.99895 * 180.02562 * 24 22 17 27 27 C 1.46924 * 120.63051 * 269.72253 * 14 11 10 28 28 H 0.97003 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99703 * 9 7 2 30 30 H 1.09005 * 109.47266 * 299.99452 * 9 7 2 31 31 H 1.09002 * 109.47431 * 60.00343 * 10 9 7 32 32 H 1.08995 * 109.47310 * 299.99641 * 10 9 7 33 33 H 1.09002 * 109.58798 * 353.11753 * 15 14 11 34 34 H 1.08996 * 109.58371 * 113.54735 * 15 14 11 35 35 H 1.08999 * 109.50002 * 65.31872 * 16 15 14 36 36 H 1.09001 * 109.49774 * 185.38216 * 16 15 14 37 37 H 0.96703 * 116.99716 * 180.02562 * 21 19 17 38 38 H 0.96699 * 117.00377 * 180.02562 * 26 24 22 39 39 H 1.09003 * 109.58516 * 246.45688 * 27 14 11 40 40 H 1.09002 * 109.58479 * 6.87847 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6644 -5.4194 1.2385 14 7 2.5202 -6.3929 0.0005 15 6 3.0554 -6.9170 1.2644 16 6 4.5814 -6.7844 1.2463 17 6 5.1345 -7.4723 -0.0038 18 1 4.8396 -8.5217 -0.0014 19 6 6.6382 -7.3734 -0.0077 20 8 7.2045 -6.8127 -0.9159 21 8 7.3485 -7.9082 0.9980 22 6 4.5754 -6.7888 -1.2538 23 1 4.9883 -7.2640 -2.1437 24 6 4.9534 -5.3301 -1.2410 25 8 5.6030 -4.8823 -0.3260 26 8 4.5676 -4.5280 -2.2458 27 6 3.0493 -6.9215 -1.2641 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5568 0.8904 31 1 2.8718 -3.6045 0.8905 32 1 2.8717 -3.6045 -0.8894 33 1 2.6488 -6.3452 2.0986 34 1 2.7810 -7.9666 1.3700 35 1 4.8547 -5.7293 1.2320 36 1 4.9982 -7.2561 2.1362 37 1 8.3104 -7.8192 0.9518 38 1 4.8342 -3.5999 -2.1939 39 1 2.7744 -7.9715 -1.3646 40 1 2.6386 -6.3527 -2.0982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275105187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:56 Heat of formation + Delta-G solvation = -254.752446 kcal Electronic energy + Delta-G solvation = -29101.334137 eV Core-core repulsion = 24815.318519 eV Total energy + Delta-G solvation = -4286.015618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51520 -39.85438 -38.03234 -36.76773 -36.41466 -36.00457 -35.53647 -33.91679 -32.99800 -31.81446 -31.18523 -26.50265 -25.64012 -24.81642 -22.69648 -22.28473 -21.53269 -19.99391 -18.97284 -18.30802 -17.95370 -17.77302 -17.12172 -16.57861 -16.21180 -16.07323 -15.89058 -15.49730 -15.35512 -14.57703 -14.51058 -14.31375 -13.98718 -13.74773 -13.47001 -13.41087 -12.78699 -12.64517 -12.53778 -12.28607 -11.88326 -11.78663 -11.67911 -11.67705 -11.60078 -11.39295 -11.10289 -11.07454 -11.04139 -10.98773 -10.68424 -10.44914 -10.39654 -10.24638 -9.81007 -9.41588 -8.94115 -8.51358 -6.13752 -4.19386 0.63863 1.98583 2.20813 2.70116 2.80805 2.96099 3.26486 3.31571 3.33395 3.91199 4.19608 4.32453 4.36073 4.40783 4.57589 4.72377 4.78241 4.95066 5.01580 5.13444 5.21460 5.29911 5.33585 5.40981 5.49936 5.55681 5.62379 5.70149 5.93785 6.02877 6.26313 6.44505 6.45180 6.61076 7.26773 7.32918 7.64432 7.78847 7.89508 8.15596 8.83528 9.45461 10.97211 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.004393 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.485082 B = 6372.376396 C = 7434.133607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.591 4.591 11 S 2.586 3.414 12 O -0.959 6.959 13 O -0.959 6.959 14 N -1.012 6.012 15 C 0.122 3.878 16 C -0.148 4.148 17 C -0.060 4.060 18 H 0.126 0.874 19 C 0.490 3.510 20 O -0.511 6.511 21 O -0.515 6.515 22 C -0.085 4.085 23 H 0.129 0.871 24 C 0.489 3.511 25 O -0.501 6.501 26 O -0.513 6.513 27 C 0.131 3.869 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.410 0.590 38 H 0.418 0.582 39 H 0.092 0.908 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -18.748 -0.576 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.724 4.724 11 S 2.685 3.315 12 O -0.949 6.949 13 O -0.950 6.950 14 N -0.848 5.848 15 C -0.003 4.003 16 C -0.187 4.187 17 C -0.080 4.080 18 H 0.143 0.857 19 C 0.332 3.668 20 O -0.398 6.398 21 O -0.326 6.326 22 C -0.106 4.106 23 H 0.147 0.853 24 C 0.331 3.669 25 O -0.388 6.388 26 O -0.326 6.326 27 C 0.005 3.995 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.269 0.731 38 H 0.279 0.721 39 H 0.111 0.889 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.641 -19.026 -0.570 21.807 hybrid contribution 2.098 1.920 -0.035 2.844 sum 12.738 -17.106 -0.606 21.337 Atomic orbital electron populations 1.69943 1.06102 1.27327 1.49448 1.25050 0.94951 0.99474 0.94863 0.86540 0.79499 0.82569 0.78721 1.20088 1.21057 1.20101 1.20931 0.92959 0.89682 1.52313 0.92164 1.18942 0.92556 0.90446 0.98822 1.30550 1.13735 1.18157 1.09958 1.05912 0.74883 0.76423 0.74263 1.93544 1.71042 1.85133 1.45172 1.93543 1.71060 1.85161 1.45216 1.58207 1.59075 1.56551 1.10979 1.21443 0.92402 1.00888 0.85557 1.22347 0.95966 1.04592 0.95748 1.20827 0.87249 1.03023 0.96855 0.85671 1.23156 0.90985 0.73924 0.78699 1.90720 1.72488 1.39874 1.36706 1.84491 1.25930 1.73834 1.48377 1.21379 0.99007 0.89932 1.00266 0.85337 1.22869 0.75738 0.89164 0.79151 1.90627 1.36412 1.76394 1.35373 1.84461 1.73635 1.26707 1.47815 1.21394 0.88799 1.02353 0.86973 0.92455 0.94835 0.94899 0.86236 0.86551 0.88126 0.90515 0.87723 0.88977 0.73127 0.72112 0.88940 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.79 4.98 -27.88 -0.14 0.66 16 10 C -0.59 -11.39 6.12 37.16 0.23 -11.16 16 11 S 2.59 45.59 5.41 -107.50 -0.58 45.01 16 12 O -0.96 -19.03 16.72 -57.54 -0.96 -20.00 16 13 O -0.96 -19.28 16.73 -57.54 -0.96 -20.24 16 14 N -1.01 -12.64 2.93 -113.53 -0.33 -12.97 16 15 C 0.12 1.24 6.31 -3.71 -0.02 1.22 16 16 C -0.15 -1.41 5.00 -26.62 -0.13 -1.54 16 17 C -0.06 -0.52 2.34 -91.73 -0.21 -0.73 16 18 H 0.13 0.66 8.14 -51.92 -0.42 0.23 16 19 C 0.49 5.00 6.68 36.00 0.24 5.24 16 20 O -0.51 -6.86 15.04 -25.65 -0.39 -7.24 16 21 O -0.51 -3.95 13.30 -39.27 -0.52 -4.48 16 22 C -0.08 -0.82 2.29 -91.65 -0.21 -1.03 16 23 H 0.13 0.98 8.07 -51.93 -0.42 0.56 16 24 C 0.49 6.35 5.64 36.00 0.20 6.55 16 25 O -0.50 -7.68 12.66 -25.65 -0.32 -8.01 16 26 O -0.51 -6.29 11.89 -39.27 -0.47 -6.76 16 27 C 0.13 1.30 5.68 -3.71 -0.02 1.27 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 32 H 0.12 2.04 6.25 -51.93 -0.32 1.72 16 33 H 0.10 1.11 7.11 -51.93 -0.37 0.74 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.29 5.38 -51.93 -0.28 1.01 16 36 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.41 1.65 9.10 45.56 0.41 2.07 16 38 H 0.42 4.23 9.10 45.56 0.41 4.64 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 1.23 6.95 -51.93 -0.36 0.87 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -38.62 343.38 -7.55 -46.17 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.42 Total: 5.19 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.48 Total: -12.48 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.40 Total: -38.51 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -3.62 Total: -66.72 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 45.59 SS G_CDS: -0.58 Total: 45.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.62 -7.55 -46.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275105187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.584 kcal (2) G-P(sol) polarization free energy of solvation -38.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds