Wall clock time and date at job start Tue Mar 31 2020 19:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48504 * 109.46940 * 239.99773 * 3 2 1 5 5 H 1.48498 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47414 * 120.00072 * 3 2 1 7 7 C 1.37882 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46919 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54001 * 68.37452 * 11 10 9 13 13 O 1.42094 * 110.54459 * 291.62427 * 11 10 9 14 14 N 1.65607 * 104.44904 * 179.97438 * 11 10 9 15 15 C 1.46926 * 120.62900 * 90.00281 * 14 11 10 16 16 C 1.53187 * 108.77227 * 233.33374 * 15 14 11 17 17 C 1.53038 * 109.31606 * 305.36475 * 16 15 14 18 18 H 1.09007 * 109.46056 * 301.36333 * 17 16 15 19 19 C 1.50696 * 109.46444 * 181.38763 * 17 16 15 20 20 O 1.20825 * 120.00353 * 240.00202 * 19 17 16 21 21 O 1.34234 * 119.99798 * 60.00133 * 19 17 16 22 22 C 1.53041 * 109.53768 * 61.36503 * 17 16 15 23 23 H 1.09004 * 109.49619 * 178.65630 * 22 17 16 24 24 C 1.50698 * 109.49420 * 58.59052 * 22 17 16 25 25 O 1.20823 * 120.00557 * 359.97438 * 24 22 17 26 26 O 1.34234 * 119.99895 * 180.02562 * 24 22 17 27 27 C 1.46924 * 120.63051 * 269.72253 * 14 11 10 28 28 H 0.97003 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99703 * 9 7 2 30 30 H 1.09005 * 109.47266 * 299.99452 * 9 7 2 31 31 H 1.09002 * 109.47431 * 60.00343 * 10 9 7 32 32 H 1.08995 * 109.47310 * 299.99641 * 10 9 7 33 33 H 1.09002 * 109.58798 * 353.11753 * 15 14 11 34 34 H 1.08996 * 109.58371 * 113.54735 * 15 14 11 35 35 H 1.08999 * 109.50002 * 65.31872 * 16 15 14 36 36 H 1.09001 * 109.49774 * 185.38216 * 16 15 14 37 37 H 0.96703 * 116.99716 * 180.02562 * 21 19 17 38 38 H 0.96699 * 117.00377 * 180.02562 * 26 24 22 39 39 H 1.09003 * 109.58516 * 246.45688 * 27 14 11 40 40 H 1.09002 * 109.58479 * 6.87847 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6644 -5.4194 1.2385 14 7 2.5202 -6.3929 0.0005 15 6 3.0554 -6.9170 1.2644 16 6 4.5814 -6.7844 1.2463 17 6 5.1345 -7.4723 -0.0038 18 1 4.8396 -8.5217 -0.0014 19 6 6.6382 -7.3734 -0.0077 20 8 7.2045 -6.8127 -0.9159 21 8 7.3485 -7.9082 0.9980 22 6 4.5754 -6.7888 -1.2538 23 1 4.9883 -7.2640 -2.1437 24 6 4.9534 -5.3301 -1.2410 25 8 5.6030 -4.8823 -0.3260 26 8 4.5676 -4.5280 -2.2458 27 6 3.0493 -6.9215 -1.2641 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5568 0.8904 31 1 2.8718 -3.6045 0.8905 32 1 2.8717 -3.6045 -0.8894 33 1 2.6488 -6.3452 2.0986 34 1 2.7810 -7.9666 1.3700 35 1 4.8547 -5.7293 1.2320 36 1 4.9982 -7.2561 2.1362 37 1 8.3104 -7.8192 0.9518 38 1 4.8342 -3.5999 -2.1939 39 1 2.7744 -7.9715 -1.3646 40 1 2.6386 -6.3527 -2.0982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275105187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:55 Heat of formation + Delta-G solvation = -286.582994 kcal Electronic energy + Delta-G solvation = -29102.714413 eV Core-core repulsion = 24815.318519 eV Total energy + Delta-G solvation = -4287.395894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34112 -40.68185 -38.90269 -38.28026 -37.22696 -37.05480 -36.91360 -35.92518 -33.87152 -33.16020 -32.58684 -27.65589 -27.28365 -25.69387 -23.84533 -23.26188 -22.92536 -20.88327 -20.11945 -19.28408 -19.02300 -18.89404 -18.43748 -17.89516 -17.33848 -17.14301 -17.02901 -16.63877 -16.54699 -16.40601 -15.55007 -15.24320 -15.00763 -14.85076 -14.55081 -14.47315 -14.32831 -13.77635 -13.68331 -13.51006 -13.24100 -13.19339 -13.02439 -12.94896 -12.84590 -12.68063 -12.46628 -12.43795 -12.26347 -12.18160 -11.97309 -11.85088 -11.78309 -11.48919 -11.17642 -11.12975 -10.66293 -10.05406 -8.28182 -6.41989 -0.78164 1.21108 1.31518 1.38007 1.40808 1.49178 1.63745 2.06248 2.13962 2.35359 2.76741 3.04908 3.08253 3.22463 3.58102 3.78491 3.81998 3.95458 4.04761 4.11355 4.25930 4.37011 4.43820 4.59121 4.65576 4.68444 4.73180 4.84004 4.86838 5.09200 5.21751 5.23290 5.27659 5.55434 5.65104 5.67847 5.71709 6.04141 6.70101 6.94538 7.03742 7.27912 8.83801 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.004393 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.485082 B = 6372.376396 C = 7434.133607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.596 4.596 11 S 2.614 3.386 12 O -0.982 6.982 13 O -0.986 6.986 14 N -1.002 6.002 15 C 0.116 3.884 16 C -0.143 4.143 17 C -0.059 4.059 18 H 0.173 0.827 19 C 0.492 3.508 20 O -0.550 6.550 21 O -0.508 6.508 22 C -0.082 4.082 23 H 0.155 0.845 24 C 0.477 3.523 25 O -0.530 6.530 26 O -0.519 6.519 27 C 0.124 3.876 28 H 0.268 0.732 29 H 0.009 0.991 30 H 0.006 0.994 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.425 0.575 38 H 0.422 0.578 39 H 0.141 0.859 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.590 -20.997 -0.516 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.011 4.011 10 C -0.727 4.727 11 S 2.710 3.290 12 O -0.972 6.972 13 O -0.976 6.976 14 N -0.841 5.841 15 C -0.008 4.008 16 C -0.182 4.182 17 C -0.078 4.078 18 H 0.190 0.810 19 C 0.336 3.664 20 O -0.441 6.441 21 O -0.321 6.321 22 C -0.102 4.102 23 H 0.172 0.828 24 C 0.320 3.680 25 O -0.419 6.419 26 O -0.333 6.333 27 C -0.001 4.001 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.286 0.714 38 H 0.284 0.716 39 H 0.159 0.841 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.279 -21.261 -0.502 24.557 hybrid contribution 1.672 2.522 -0.025 3.026 sum 13.951 -18.739 -0.527 23.368 Atomic orbital electron populations 1.70081 1.07916 1.28412 1.50653 1.26039 0.95817 1.03579 0.94310 0.85427 0.78228 0.77662 0.79319 1.18772 1.20641 1.19225 1.21398 0.93622 0.90877 1.51810 0.91304 1.18755 0.93302 0.92764 0.96323 1.30507 1.12878 1.18315 1.10995 1.04767 0.75118 0.75992 0.73074 1.93508 1.72242 1.85315 1.46122 1.93503 1.72348 1.85390 1.46353 1.57811 1.58462 1.54485 1.13302 1.21763 0.92595 1.02738 0.83693 1.22260 0.95465 1.03076 0.97399 1.20991 0.86082 1.05282 0.95433 0.80972 1.23471 0.91732 0.72956 0.78286 1.90714 1.73372 1.41663 1.38340 1.84454 1.27326 1.73071 1.47291 1.21559 0.98792 0.87669 1.02224 0.82800 1.23750 0.75107 0.90579 0.78535 1.90621 1.37770 1.77204 1.36345 1.84472 1.73622 1.27272 1.47928 1.21772 0.88655 1.04662 0.84972 0.92293 0.97276 0.97590 0.85518 0.85240 0.89469 0.86352 0.90956 0.86745 0.71372 0.71623 0.84096 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.03 1.45 4.98 29.85 0.15 1.60 16 10 C -0.60 -23.69 6.12 71.98 0.44 -23.25 16 11 S 2.61 92.07 5.41 -56.49 -0.31 91.77 16 12 O -0.98 -39.01 16.72 -127.65 -2.13 -41.14 16 13 O -0.99 -39.85 16.73 -127.65 -2.14 -41.98 16 14 N -1.00 -22.70 2.93 -513.09 -1.50 -24.20 16 15 C 0.12 1.99 6.31 86.36 0.55 2.53 16 16 C -0.14 -2.30 5.00 30.67 0.15 -2.14 16 17 C -0.06 -0.78 2.34 -11.51 -0.03 -0.81 16 18 H 0.17 0.68 8.14 -2.38 -0.02 0.66 16 19 C 0.49 8.69 6.68 71.23 0.48 9.17 16 20 O -0.55 -13.94 15.04 28.57 0.43 -13.51 16 21 O -0.51 -6.29 13.30 -51.45 -0.68 -6.97 16 22 C -0.08 -1.33 2.29 -11.46 -0.03 -1.36 16 23 H 0.15 1.77 8.07 -2.38 -0.02 1.75 16 24 C 0.48 11.93 5.64 71.24 0.40 12.33 16 25 O -0.53 -16.16 12.66 28.57 0.36 -15.79 16 26 O -0.52 -12.65 11.89 -51.46 -0.61 -13.26 16 27 C 0.12 2.03 5.68 86.36 0.49 2.52 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 32 H 0.13 4.68 6.25 -2.39 -0.01 4.67 16 33 H 0.09 1.77 7.11 -2.39 -0.02 1.76 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.70 5.38 -2.39 -0.01 1.69 16 36 H 0.11 1.33 8.09 -2.39 -0.02 1.32 16 37 H 0.43 2.41 9.10 -74.06 -0.67 1.73 16 38 H 0.42 8.81 9.10 -74.06 -0.67 8.14 16 39 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.99 6.95 -2.39 -0.02 1.97 16 Total: -1.00 -87.06 343.38 -1.21 -88.28 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.24 Total: 16.28 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.30 Total: -28.90 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.22 Total: -80.66 kcal Atomic # 8 Polarization: -127.89 SS G_CDS: -4.77 Total: -132.66 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 92.07 SS G_CDS: -0.31 Total: 91.77 kcal Total: -87.06 -1.21 -88.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275105187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.307 kcal (2) G-P(sol) polarization free energy of solvation -87.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds