Wall clock time and date at job start Tue Mar 31 2020 19:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48495 * 109.47609 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47064 * 300.00198 * 3 2 1 6 6 H 1.48505 * 109.46832 * 59.99580 * 3 2 1 7 7 C 1.37881 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47278 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.47111 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54211 * 68.36994 * 11 10 9 13 13 O 1.42098 * 110.54161 * 291.62025 * 11 10 9 14 14 N 1.65597 * 104.44745 * 179.97438 * 11 10 9 15 15 C 1.46930 * 120.62897 * 270.01750 * 14 11 10 16 16 C 1.53186 * 108.77576 * 233.58746 * 15 14 11 17 17 C 1.53045 * 109.31590 * 305.36535 * 16 15 14 18 18 H 1.08997 * 109.45985 * 301.34439 * 17 16 15 19 19 C 1.50698 * 109.45993 * 181.38396 * 17 16 15 20 20 O 1.20822 * 119.99935 * 239.93278 * 19 17 16 21 21 O 1.34237 * 120.00024 * 59.93342 * 19 17 16 22 22 C 1.53041 * 109.53408 * 61.36576 * 17 16 15 23 23 H 1.09002 * 109.50018 * 58.58675 * 22 17 16 24 24 C 1.50702 * 109.52251 * 178.67084 * 22 17 16 25 25 O 1.20829 * 119.99778 * 359.90928 * 24 22 17 26 26 O 1.34227 * 120.00076 * 179.97438 * 24 22 17 27 27 C 1.46929 * 120.63371 * 90.00045 * 14 11 10 28 28 H 0.96998 * 120.00106 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47587 * 59.99085 * 9 7 2 30 30 H 1.09005 * 109.46470 * 299.99465 * 9 7 2 31 31 H 1.08991 * 109.47505 * 59.99461 * 10 9 7 32 32 H 1.09005 * 109.46864 * 299.99139 * 10 9 7 33 33 H 1.08992 * 109.58769 * 353.37858 * 15 14 11 34 34 H 1.09008 * 109.58720 * 113.80176 * 15 14 11 35 35 H 1.09000 * 109.49625 * 65.32030 * 16 15 14 36 36 H 1.09000 * 109.49684 * 185.38136 * 16 15 14 37 37 H 0.96699 * 117.00066 * 179.97438 * 21 19 17 38 38 H 0.96701 * 117.00236 * 179.97438 * 26 24 22 39 39 H 1.08996 * 109.58283 * 6.61897 * 27 14 11 40 40 H 1.09002 * 109.58429 * 246.20079 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2394 14 7 2.5205 -6.3927 0.0032 15 6 3.0553 -6.9172 -1.2608 16 6 2.9461 -8.4451 -1.2460 17 6 3.6402 -8.9902 0.0044 18 1 4.6849 -8.6794 0.0044 19 6 3.5644 -10.4952 0.0049 20 8 3.0119 -11.0719 0.9116 21 8 4.1106 -11.1952 -1.0018 22 6 2.9458 -8.4442 1.2541 23 1 1.8950 -8.7338 1.2424 24 6 3.6088 -9.0068 2.4850 25 8 4.5405 -9.7681 2.3748 26 8 3.1635 -8.6631 3.7037 27 6 3.0549 -6.9163 1.2678 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8895 30 1 0.6242 -2.5567 0.8904 31 1 2.8713 -3.6039 0.8921 32 1 2.8726 -3.6048 -0.8878 33 1 2.4789 -6.5178 -2.0951 34 1 4.1008 -6.6266 -1.3639 35 1 1.8954 -8.7347 -1.2343 36 1 3.4259 -8.8527 -2.1358 37 1 4.0371 -12.1583 -0.9575 38 1 3.6203 -9.0497 4.4633 39 1 2.4783 -6.5161 2.1017 40 1 4.1004 -6.6255 1.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275105188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:59 Heat of formation + Delta-G solvation = -260.228494 kcal Electronic energy + Delta-G solvation = -27900.509589 eV Core-core repulsion = 23614.256511 eV Total energy + Delta-G solvation = -4286.253077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44500 -39.94371 -38.29670 -36.79037 -36.53903 -36.12435 -35.54658 -33.93940 -33.12213 -31.90479 -31.20956 -26.60811 -25.63682 -24.93604 -22.44444 -22.38683 -21.55964 -20.23476 -18.73866 -18.34151 -18.24705 -17.86033 -17.12890 -16.86443 -16.46585 -16.29172 -15.77872 -15.56232 -15.23116 -14.72470 -14.59008 -14.27688 -14.01191 -13.85177 -13.62368 -13.45163 -12.94813 -12.59147 -12.48173 -12.08006 -11.90239 -11.85728 -11.81484 -11.69513 -11.68785 -11.55560 -11.22908 -11.12751 -11.08608 -11.00902 -10.79740 -10.59350 -10.44431 -10.44176 -9.83990 -9.44261 -8.98553 -8.54422 -6.16297 -4.22079 0.59641 1.94430 2.04368 2.60519 2.69434 2.91383 3.22909 3.30511 3.33520 3.89118 4.17665 4.31676 4.34791 4.39823 4.46036 4.64372 4.66033 4.89330 4.96577 5.09014 5.19122 5.25403 5.29492 5.39681 5.45307 5.48446 5.58739 5.64346 5.78105 5.87972 6.23473 6.28892 6.40285 6.42221 7.25015 7.30495 7.60694 7.68908 7.76793 8.12906 8.81637 9.43116 10.94697 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002928 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.374180 B = 9561.778149 C = 9990.231430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.586 4.586 11 S 2.586 3.414 12 O -0.959 6.959 13 O -0.958 6.958 14 N -1.008 6.008 15 C 0.115 3.885 16 C -0.123 4.123 17 C -0.063 4.063 18 H 0.122 0.878 19 C 0.492 3.508 20 O -0.510 6.510 21 O -0.514 6.514 22 C -0.081 4.081 23 H 0.126 0.874 24 C 0.497 3.503 25 O -0.512 6.512 26 O -0.508 6.508 27 C 0.130 3.870 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.410 0.590 38 H 0.412 0.588 39 H 0.117 0.883 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 -19.535 -0.196 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.720 4.720 11 S 2.686 3.314 12 O -0.950 6.950 13 O -0.949 6.949 14 N -0.843 5.843 15 C -0.010 4.010 16 C -0.162 4.162 17 C -0.082 4.082 18 H 0.140 0.860 19 C 0.334 3.666 20 O -0.398 6.398 21 O -0.326 6.326 22 C -0.102 4.102 23 H 0.143 0.857 24 C 0.339 3.661 25 O -0.400 6.400 26 O -0.319 6.319 27 C 0.004 3.996 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.269 0.731 38 H 0.271 0.729 39 H 0.135 0.865 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.784 -19.399 -0.339 21.297 hybrid contribution 1.321 0.163 0.629 1.472 sum 10.105 -19.236 0.290 21.730 Atomic orbital electron populations 1.69958 1.06121 1.27152 1.49537 1.25072 0.94974 0.99577 0.94866 0.86413 0.79923 0.83152 0.77790 1.19634 1.20788 1.20790 1.21030 0.93100 0.89697 1.52178 0.91957 1.18984 0.92714 0.90578 0.98939 1.30477 1.13647 1.17625 1.10222 1.05921 0.74764 0.76484 0.74257 1.93539 1.70970 1.85174 1.45279 1.93549 1.70976 1.85137 1.45221 1.58133 1.59326 1.56326 1.10559 1.21509 1.00565 0.92836 0.86097 1.21940 1.01999 0.96485 0.95798 1.20874 1.03786 0.87451 0.96134 0.86010 1.23081 0.74031 0.91035 0.78432 1.90709 1.41262 1.71923 1.35877 1.84490 1.73870 1.26093 1.48129 1.21279 1.02793 0.97756 0.88355 0.85658 1.22859 0.80783 0.77815 0.84674 1.90696 1.28475 1.33591 1.87235 1.84546 1.61560 1.69248 1.16585 1.21318 1.01269 0.89552 0.87462 0.92539 0.94808 0.94795 0.86111 0.86080 0.87406 0.90512 0.90146 0.88369 0.73117 0.72948 0.86465 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.93 9.11 -34.44 -0.31 -14.25 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.66 4.98 -27.89 -0.14 0.52 16 10 C -0.59 -10.32 6.12 37.16 0.23 -10.10 16 11 S 2.59 42.18 5.45 -107.50 -0.59 41.59 16 12 O -0.96 -18.01 16.59 -57.54 -0.95 -18.96 16 13 O -0.96 -18.28 16.59 -57.54 -0.95 -19.24 16 14 N -1.01 -11.58 3.22 -113.52 -0.37 -11.95 16 15 C 0.12 1.03 6.43 -3.71 -0.02 1.00 16 16 C -0.12 -0.99 5.30 -26.61 -0.14 -1.13 16 17 C -0.06 -0.57 1.80 -91.73 -0.16 -0.74 16 18 H 0.12 0.95 8.13 -51.93 -0.42 0.52 16 19 C 0.49 5.16 6.60 36.00 0.24 5.40 16 20 O -0.51 -6.96 14.80 -26.11 -0.39 -7.34 16 21 O -0.51 -3.95 13.30 -39.28 -0.52 -4.47 16 22 C -0.08 -0.84 1.98 -91.65 -0.18 -1.02 16 23 H 0.13 1.39 8.13 -51.93 -0.42 0.97 16 24 C 0.50 5.57 6.60 36.01 0.24 5.81 16 25 O -0.51 -6.82 14.80 -26.12 -0.39 -7.21 16 26 O -0.51 -4.73 13.35 -39.25 -0.52 -5.26 16 27 C 0.13 1.33 5.64 -3.71 -0.02 1.31 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.12 1.88 8.14 -51.92 -0.42 1.45 16 33 H 0.11 1.02 6.86 -51.93 -0.36 0.66 16 34 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.41 1.59 9.10 45.56 0.41 2.00 16 38 H 0.41 2.05 9.10 45.56 0.41 2.46 16 39 H 0.12 1.30 6.86 -51.93 -0.36 0.94 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -38.59 351.57 -7.69 -46.29 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.65 Total: 2.43 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.38 Total: -11.70 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.37 Total: -37.11 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -3.73 Total: -62.48 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 42.18 SS G_CDS: -0.59 Total: 41.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.59 -7.69 -46.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275105188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.942 kcal (2) G-P(sol) polarization free energy of solvation -38.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds