Wall clock time and date at job start Tue Mar 31 2020 19:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48495 * 109.47609 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47064 * 300.00198 * 3 2 1 6 6 H 1.48505 * 109.46832 * 59.99580 * 3 2 1 7 7 C 1.37881 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47278 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.47111 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54211 * 68.36994 * 11 10 9 13 13 O 1.42098 * 110.54161 * 291.62025 * 11 10 9 14 14 N 1.65597 * 104.44745 * 179.97438 * 11 10 9 15 15 C 1.46930 * 120.62897 * 270.01750 * 14 11 10 16 16 C 1.53186 * 108.77576 * 233.58746 * 15 14 11 17 17 C 1.53045 * 109.31590 * 305.36535 * 16 15 14 18 18 H 1.08997 * 109.45985 * 301.34439 * 17 16 15 19 19 C 1.50698 * 109.45993 * 181.38396 * 17 16 15 20 20 O 1.20822 * 119.99935 * 239.93278 * 19 17 16 21 21 O 1.34237 * 120.00024 * 59.93342 * 19 17 16 22 22 C 1.53041 * 109.53408 * 61.36576 * 17 16 15 23 23 H 1.09002 * 109.50018 * 58.58675 * 22 17 16 24 24 C 1.50702 * 109.52251 * 178.67084 * 22 17 16 25 25 O 1.20829 * 119.99778 * 359.90928 * 24 22 17 26 26 O 1.34227 * 120.00076 * 179.97438 * 24 22 17 27 27 C 1.46929 * 120.63371 * 90.00045 * 14 11 10 28 28 H 0.96998 * 120.00106 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47587 * 59.99085 * 9 7 2 30 30 H 1.09005 * 109.46470 * 299.99465 * 9 7 2 31 31 H 1.08991 * 109.47505 * 59.99461 * 10 9 7 32 32 H 1.09005 * 109.46864 * 299.99139 * 10 9 7 33 33 H 1.08992 * 109.58769 * 353.37858 * 15 14 11 34 34 H 1.09008 * 109.58720 * 113.80176 * 15 14 11 35 35 H 1.09000 * 109.49625 * 65.32030 * 16 15 14 36 36 H 1.09000 * 109.49684 * 185.38136 * 16 15 14 37 37 H 0.96699 * 117.00066 * 179.97438 * 21 19 17 38 38 H 0.96701 * 117.00236 * 179.97438 * 26 24 22 39 39 H 1.08996 * 109.58283 * 6.61897 * 27 14 11 40 40 H 1.09002 * 109.58429 * 246.20079 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2394 14 7 2.5205 -6.3927 0.0032 15 6 3.0553 -6.9172 -1.2608 16 6 2.9461 -8.4451 -1.2460 17 6 3.6402 -8.9902 0.0044 18 1 4.6849 -8.6794 0.0044 19 6 3.5644 -10.4952 0.0049 20 8 3.0119 -11.0719 0.9116 21 8 4.1106 -11.1952 -1.0018 22 6 2.9458 -8.4442 1.2541 23 1 1.8950 -8.7338 1.2424 24 6 3.6088 -9.0068 2.4850 25 8 4.5405 -9.7681 2.3748 26 8 3.1635 -8.6631 3.7037 27 6 3.0549 -6.9163 1.2678 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8895 30 1 0.6242 -2.5567 0.8904 31 1 2.8713 -3.6039 0.8921 32 1 2.8726 -3.6048 -0.8878 33 1 2.4789 -6.5178 -2.0951 34 1 4.1008 -6.6266 -1.3639 35 1 1.8954 -8.7347 -1.2343 36 1 3.4259 -8.8527 -2.1358 37 1 4.0371 -12.1583 -0.9575 38 1 3.6203 -9.0497 4.4633 39 1 2.4783 -6.5161 2.1017 40 1 4.1004 -6.6255 1.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275105188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:59 Heat of formation + Delta-G solvation = -291.689547 kcal Electronic energy + Delta-G solvation = -27901.873842 eV Core-core repulsion = 23614.256511 eV Total energy + Delta-G solvation = -4287.617331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23473 -40.73115 -39.09550 -38.20777 -37.30292 -36.97041 -36.91668 -35.85392 -33.97373 -33.08050 -32.64918 -27.63375 -27.29055 -25.77226 -23.60320 -23.15563 -22.98348 -21.02191 -19.84177 -19.22151 -19.05975 -19.01920 -18.47524 -17.85333 -17.59484 -17.30526 -17.00666 -16.66475 -16.49174 -16.18849 -15.69243 -15.11010 -14.97165 -14.84986 -14.60528 -14.45929 -14.35057 -13.73445 -13.69112 -13.50399 -13.16435 -13.09677 -12.92824 -12.80768 -12.74642 -12.68569 -12.58886 -12.39285 -12.21058 -12.08815 -12.03864 -11.90439 -11.68408 -11.63864 -11.41840 -11.09375 -10.62911 -10.06251 -8.23511 -6.37012 -0.72260 1.12939 1.25157 1.43612 1.43821 1.56975 1.66546 2.03307 2.04644 2.40360 2.88683 3.10136 3.11622 3.25749 3.53932 3.71854 3.81376 3.92081 4.09817 4.18369 4.21631 4.30766 4.37585 4.59886 4.64049 4.67992 4.76945 4.81648 4.85497 5.06574 5.17142 5.31402 5.33186 5.55653 5.57929 5.62448 5.71966 6.09541 6.77577 6.93700 6.99843 7.33349 8.88818 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002928 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.374180 B = 9561.778149 C = 9990.231430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.018 3.982 10 C -0.585 4.585 11 S 2.611 3.389 12 O -0.987 6.987 13 O -0.992 6.992 14 N -0.997 5.997 15 C 0.105 3.895 16 C -0.117 4.117 17 C -0.062 4.062 18 H 0.144 0.856 19 C 0.493 3.507 20 O -0.550 6.550 21 O -0.505 6.505 22 C -0.083 4.083 23 H 0.111 0.889 24 C 0.500 3.500 25 O -0.535 6.535 26 O -0.510 6.510 27 C 0.127 3.873 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.426 0.574 38 H 0.429 0.571 39 H 0.105 0.895 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -19.840 -0.807 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.096 0.904 9 C -0.021 4.021 10 C -0.717 4.717 11 S 2.710 3.290 12 O -0.978 6.978 13 O -0.982 6.982 14 N -0.835 5.835 15 C -0.018 4.018 16 C -0.156 4.156 17 C -0.081 4.081 18 H 0.161 0.839 19 C 0.337 3.663 20 O -0.440 6.440 21 O -0.319 6.319 22 C -0.104 4.104 23 H 0.129 0.871 24 C 0.343 3.657 25 O -0.424 6.424 26 O -0.324 6.324 27 C 0.001 3.999 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.288 0.712 38 H 0.291 0.709 39 H 0.123 0.877 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.769 -19.706 -0.956 22.973 hybrid contribution 0.409 0.110 0.828 0.930 sum 12.178 -19.596 -0.128 23.072 Atomic orbital electron populations 1.70104 1.08072 1.28187 1.51102 1.26105 0.95817 1.03851 0.94526 0.85288 0.79290 0.78158 0.77652 1.17758 1.20517 1.20628 1.21566 0.94058 0.90734 1.51112 0.90426 1.18840 0.93720 0.93198 0.96342 1.30373 1.12653 1.16006 1.12674 1.04826 0.74873 0.76446 0.72846 1.93498 1.72272 1.85605 1.46395 1.93503 1.72456 1.85611 1.46614 1.57672 1.58639 1.54770 1.12389 1.21886 1.02460 0.93202 0.84285 1.21942 1.01464 0.95812 0.96406 1.20946 1.04866 0.86630 0.95630 0.83865 1.23355 0.73168 0.91701 0.78112 1.90698 1.43090 1.72766 1.37464 1.84449 1.72976 1.27583 1.46849 1.21292 1.02241 0.97848 0.89049 0.87087 1.22942 0.80280 0.77308 0.85193 1.90682 1.29550 1.34586 1.87618 1.84520 1.61727 1.69196 1.16937 1.21511 1.02886 0.89280 0.86189 0.92479 0.97494 0.97658 0.83825 0.83506 0.87971 0.86644 0.91538 0.85654 0.71208 0.70905 0.87650 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -28.62 9.11 25.60 0.23 -28.39 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 9 C 0.02 0.90 4.98 29.85 0.15 1.04 16 10 C -0.58 -19.98 6.12 71.98 0.44 -19.54 16 11 S 2.61 84.34 5.45 -56.49 -0.31 84.03 16 12 O -0.99 -37.29 16.59 -127.65 -2.12 -39.40 16 13 O -0.99 -38.50 16.59 -127.65 -2.12 -40.62 16 14 N -1.00 -20.81 3.22 -513.07 -1.65 -22.46 16 15 C 0.11 1.54 6.43 86.36 0.56 2.10 16 16 C -0.12 -1.55 5.30 30.67 0.16 -1.39 16 17 C -0.06 -0.96 1.80 -11.51 -0.02 -0.98 16 18 H 0.14 1.64 8.13 -2.39 -0.02 1.62 16 19 C 0.49 9.46 6.60 71.24 0.47 9.93 16 20 O -0.55 -14.63 14.80 29.02 0.43 -14.20 16 21 O -0.51 -6.50 13.30 -51.49 -0.68 -7.19 16 22 C -0.08 -1.61 1.98 -11.46 -0.02 -1.63 16 23 H 0.11 2.46 8.13 -2.39 -0.02 2.44 16 24 C 0.50 10.55 6.60 71.24 0.47 11.02 16 25 O -0.53 -13.47 14.80 28.99 0.43 -13.04 16 26 O -0.51 -8.95 13.35 -51.39 -0.69 -9.63 16 27 C 0.13 2.31 5.64 86.36 0.49 2.79 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.14 4.20 8.14 -2.40 -0.02 4.18 16 32 H 0.15 4.20 8.14 -2.39 -0.02 4.18 16 33 H 0.10 1.68 6.86 -2.39 -0.02 1.67 16 34 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.13 1.02 8.08 -2.39 -0.02 1.00 16 37 H 0.43 2.39 9.10 -74.06 -0.67 1.72 16 38 H 0.43 3.74 9.10 -74.06 -0.67 3.07 16 39 H 0.11 2.21 6.86 -2.39 -0.02 2.20 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -85.69 351.57 -1.26 -86.95 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -0.25 Total: 11.78 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.39 Total: -24.84 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.37 Total: -78.07 kcal Atomic # 8 Polarization: -119.34 SS G_CDS: -4.75 Total: -124.09 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 84.34 SS G_CDS: -0.31 Total: 84.03 kcal Total: -85.69 -1.26 -86.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275105188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.738 kcal (2) G-P(sol) polarization free energy of solvation -85.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -290.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds