Wall clock time and date at job start Tue Mar 31 2020 19:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48509 * 109.46918 * 240.00122 * 3 2 1 5 5 H 1.48498 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47414 * 120.00072 * 3 2 1 7 7 C 1.37882 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46919 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54001 * 68.37452 * 11 10 9 13 13 O 1.42094 * 110.54459 * 291.62427 * 11 10 9 14 14 N 1.65607 * 104.44904 * 179.97438 * 11 10 9 15 15 C 1.46924 * 120.63051 * 269.72253 * 14 11 10 16 16 C 1.53187 * 108.77642 * 126.66488 * 15 14 11 17 17 C 1.53041 * 109.31211 * 54.63373 * 16 15 14 18 18 H 1.09007 * 109.45589 * 58.65622 * 17 16 15 19 19 C 1.50696 * 109.45982 * 178.61264 * 17 16 15 20 20 O 1.20827 * 119.99984 * 120.07294 * 19 17 16 21 21 O 1.34227 * 120.00454 * 300.06856 * 19 17 16 22 22 C 1.53038 * 109.53768 * 298.63806 * 17 16 15 23 23 H 1.08999 * 109.52370 * 301.39353 * 22 17 16 24 24 C 1.50705 * 109.49714 * 181.31845 * 22 17 16 25 25 O 1.20828 * 119.99734 * 0.15177 * 24 22 17 26 26 O 1.34229 * 120.00073 * 180.16397 * 24 22 17 27 27 C 1.46926 * 120.62900 * 90.00281 * 14 11 10 28 28 H 0.97003 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99703 * 9 7 2 30 30 H 1.09005 * 109.47266 * 299.99452 * 9 7 2 31 31 H 1.09002 * 109.47431 * 60.00343 * 10 9 7 32 32 H 1.08995 * 109.47310 * 299.99641 * 10 9 7 33 33 H 1.09003 * 109.58516 * 246.45688 * 15 14 11 34 34 H 1.09002 * 109.58479 * 6.87847 * 15 14 11 35 35 H 1.08999 * 109.49975 * 294.68379 * 16 15 14 36 36 H 1.09004 * 109.52338 * 174.59879 * 16 15 14 37 37 H 0.96696 * 117.00648 * 179.97438 * 21 19 17 38 38 H 0.96702 * 116.99781 * 180.02562 * 26 24 22 39 39 H 1.09002 * 109.58798 * 353.11753 * 27 14 11 40 40 H 1.08996 * 109.58781 * 113.40224 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6644 -5.4194 1.2385 14 7 2.5202 -6.3929 0.0005 15 6 3.0493 -6.9215 -1.2641 16 6 4.5754 -6.7888 -1.2538 17 6 5.1345 -7.4723 -0.0038 18 1 4.8398 -8.5218 -0.0013 19 6 6.6382 -7.3734 -0.0077 20 8 7.2089 -6.8106 0.8965 21 8 7.3436 -7.9105 -1.0154 22 6 4.5814 -6.7844 1.2463 23 1 4.8547 -5.7293 1.2326 24 6 5.1577 -7.4372 2.4763 25 8 5.9337 -8.3566 2.3648 26 8 4.8087 -6.9975 3.6955 27 6 3.0554 -6.9170 1.2644 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5568 0.8904 31 1 2.8718 -3.6045 0.8905 32 1 2.8717 -3.6045 -0.8894 33 1 2.7744 -7.9715 -1.3646 34 1 2.6386 -6.3527 -2.0982 35 1 4.8488 -5.7337 -1.2446 36 1 4.9883 -7.2640 -2.1437 37 1 8.3056 -7.8215 -0.9743 38 1 5.2047 -7.4474 4.4544 39 1 2.6488 -6.3452 2.0986 40 1 2.7789 -7.9659 1.3713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275105190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:03 Heat of formation + Delta-G solvation = -260.380979 kcal Electronic energy + Delta-G solvation = -28207.909149 eV Core-core repulsion = 23921.649460 eV Total energy + Delta-G solvation = -4286.259689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44039 -39.92945 -38.30763 -36.79129 -36.52601 -36.11111 -35.56146 -33.93575 -33.09468 -31.93171 -31.20258 -26.58741 -25.65414 -24.93425 -22.49088 -22.38321 -21.50683 -20.13006 -18.84846 -18.31614 -18.24011 -17.84657 -17.09653 -16.80325 -16.52487 -16.33915 -15.77275 -15.57565 -15.22986 -14.67126 -14.58766 -14.32504 -13.94268 -13.85171 -13.63129 -13.44771 -12.95407 -12.62051 -12.46148 -12.08994 -11.87463 -11.81532 -11.80843 -11.72534 -11.69850 -11.53740 -11.27783 -11.09999 -11.08656 -11.00539 -10.78526 -10.63615 -10.45720 -10.41975 -9.83226 -9.46015 -8.98361 -8.52533 -6.14979 -4.20786 0.60078 1.95532 2.05526 2.61240 2.69713 2.90999 3.25829 3.31015 3.32597 3.87765 4.17483 4.30691 4.35509 4.37364 4.46785 4.62512 4.65873 4.87446 4.95105 5.09123 5.20278 5.25186 5.28874 5.37595 5.44791 5.49086 5.58572 5.63419 5.78092 5.87689 6.26082 6.29408 6.39099 6.42695 7.25540 7.31378 7.62408 7.69582 7.77661 8.14029 8.82323 9.44266 10.95942 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.003644 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.313567 B = 7681.702666 C = 8225.978936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.589 4.589 11 S 2.588 3.412 12 O -0.959 6.959 13 O -0.959 6.959 14 N -1.007 6.007 15 C 0.120 3.880 16 C -0.130 4.130 17 C -0.061 4.061 18 H 0.121 0.879 19 C 0.492 3.508 20 O -0.509 6.509 21 O -0.514 6.514 22 C -0.087 4.087 23 H 0.128 0.872 24 C 0.497 3.503 25 O -0.512 6.512 26 O -0.509 6.509 27 C 0.135 3.865 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.410 0.590 38 H 0.412 0.588 39 H 0.114 0.886 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.757 -17.694 -0.207 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.687 3.313 12 O -0.949 6.949 13 O -0.949 6.949 14 N -0.842 5.842 15 C -0.005 4.005 16 C -0.169 4.169 17 C -0.081 4.081 18 H 0.139 0.861 19 C 0.333 3.667 20 O -0.396 6.396 21 O -0.326 6.326 22 C -0.108 4.108 23 H 0.146 0.854 24 C 0.339 3.661 25 O -0.400 6.400 26 O -0.320 6.320 27 C 0.009 3.991 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.269 0.731 38 H 0.271 0.729 39 H 0.132 0.868 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.395 -17.746 -0.349 20.569 hybrid contribution 2.205 1.007 0.630 2.504 sum 12.599 -16.739 0.281 20.953 Atomic orbital electron populations 1.69942 1.06112 1.27357 1.49400 1.25055 0.94960 0.99513 0.94841 0.86536 0.79506 0.82544 0.78722 1.20095 1.21057 1.20064 1.20949 0.93011 0.89723 1.52388 0.92095 1.18966 0.92662 0.90513 0.98912 1.30510 1.13729 1.17882 1.10155 1.05924 0.74819 0.76349 0.74246 1.93548 1.70939 1.85163 1.45250 1.93550 1.71027 1.85129 1.45208 1.58170 1.58926 1.56545 1.10585 1.21459 0.92066 1.01228 0.85789 1.22050 0.96576 1.02255 0.95984 1.20839 0.87421 1.03810 0.96004 0.86089 1.23067 0.90956 0.74186 0.78443 1.90719 1.72171 1.40723 1.36017 1.84479 1.26077 1.73918 1.48158 1.21393 0.97811 1.03107 0.88507 0.85440 1.22839 0.78094 0.80556 0.84642 1.90696 1.33127 1.28930 1.87205 1.84536 1.68579 1.62288 1.16609 1.21264 0.88698 1.01999 0.87159 0.92440 0.94832 0.94796 0.86136 0.86144 0.90376 0.87689 0.89923 0.88283 0.73082 0.72889 0.86772 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.01 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -10.46 6.12 37.16 0.23 -10.23 16 11 S 2.59 42.42 5.41 -107.50 -0.58 41.84 16 12 O -0.96 -18.11 16.72 -57.54 -0.96 -19.07 16 13 O -0.96 -18.36 16.73 -57.54 -0.96 -19.32 16 14 N -1.01 -11.59 3.22 -113.53 -0.37 -11.96 16 15 C 0.12 1.07 6.31 -3.71 -0.02 1.04 16 16 C -0.13 -0.98 5.30 -26.61 -0.14 -1.12 16 17 C -0.06 -0.54 1.79 -91.73 -0.16 -0.71 16 18 H 0.12 0.94 8.13 -51.92 -0.42 0.51 16 19 C 0.49 5.16 6.60 36.00 0.24 5.40 16 20 O -0.51 -7.01 14.79 -26.12 -0.39 -7.40 16 21 O -0.51 -4.02 13.30 -39.25 -0.52 -4.55 16 22 C -0.09 -0.87 1.98 -91.65 -0.18 -1.06 16 23 H 0.13 1.28 8.13 -51.93 -0.42 0.86 16 24 C 0.50 5.52 6.61 36.01 0.24 5.75 16 25 O -0.51 -6.82 14.79 -26.12 -0.39 -7.20 16 26 O -0.51 -4.69 13.35 -39.26 -0.52 -5.22 16 27 C 0.14 1.38 5.52 -3.71 -0.02 1.36 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.92 8.14 -51.92 -0.42 1.49 16 32 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.97 7.09 -51.93 -0.37 0.60 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.41 1.70 9.10 45.56 0.41 2.11 16 38 H 0.41 2.06 9.10 45.56 0.41 2.48 16 39 H 0.11 1.23 7.11 -51.93 -0.37 0.87 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -38.75 352.03 -7.72 -46.47 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.67 Total: 2.28 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.38 Total: -11.79 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.37 Total: -37.21 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -3.74 Total: -62.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 42.42 SS G_CDS: -0.58 Total: 41.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.75 -7.72 -46.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275105190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.910 kcal (2) G-P(sol) polarization free energy of solvation -38.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds