Wall clock time and date at job start Tue Mar 31 2020 19:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48509 * 109.46918 * 240.00122 * 3 2 1 5 5 H 1.48498 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47414 * 120.00072 * 3 2 1 7 7 C 1.37882 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46919 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54001 * 68.37452 * 11 10 9 13 13 O 1.42094 * 110.54459 * 291.62427 * 11 10 9 14 14 N 1.65607 * 104.44904 * 179.97438 * 11 10 9 15 15 C 1.46924 * 120.63051 * 269.72253 * 14 11 10 16 16 C 1.53187 * 108.77642 * 126.66488 * 15 14 11 17 17 C 1.53041 * 109.31211 * 54.63373 * 16 15 14 18 18 H 1.09007 * 109.45589 * 58.65622 * 17 16 15 19 19 C 1.50696 * 109.45982 * 178.61264 * 17 16 15 20 20 O 1.20827 * 119.99984 * 120.07294 * 19 17 16 21 21 O 1.34227 * 120.00454 * 300.06856 * 19 17 16 22 22 C 1.53038 * 109.53768 * 298.63806 * 17 16 15 23 23 H 1.08999 * 109.52370 * 301.39353 * 22 17 16 24 24 C 1.50705 * 109.49714 * 181.31845 * 22 17 16 25 25 O 1.20828 * 119.99734 * 0.15177 * 24 22 17 26 26 O 1.34229 * 120.00073 * 180.16397 * 24 22 17 27 27 C 1.46926 * 120.62900 * 90.00281 * 14 11 10 28 28 H 0.97003 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99703 * 9 7 2 30 30 H 1.09005 * 109.47266 * 299.99452 * 9 7 2 31 31 H 1.09002 * 109.47431 * 60.00343 * 10 9 7 32 32 H 1.08995 * 109.47310 * 299.99641 * 10 9 7 33 33 H 1.09003 * 109.58516 * 246.45688 * 15 14 11 34 34 H 1.09002 * 109.58479 * 6.87847 * 15 14 11 35 35 H 1.08999 * 109.49975 * 294.68379 * 16 15 14 36 36 H 1.09004 * 109.52338 * 174.59879 * 16 15 14 37 37 H 0.96696 * 117.00648 * 179.97438 * 21 19 17 38 38 H 0.96702 * 116.99781 * 180.02562 * 26 24 22 39 39 H 1.09002 * 109.58798 * 353.11753 * 27 14 11 40 40 H 1.08996 * 109.58781 * 113.40224 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6644 -5.4194 1.2385 14 7 2.5202 -6.3929 0.0005 15 6 3.0493 -6.9215 -1.2641 16 6 4.5754 -6.7888 -1.2538 17 6 5.1345 -7.4723 -0.0038 18 1 4.8398 -8.5218 -0.0013 19 6 6.6382 -7.3734 -0.0077 20 8 7.2089 -6.8106 0.8965 21 8 7.3436 -7.9105 -1.0154 22 6 4.5814 -6.7844 1.2463 23 1 4.8547 -5.7293 1.2326 24 6 5.1577 -7.4372 2.4763 25 8 5.9337 -8.3566 2.3648 26 8 4.8087 -6.9975 3.6955 27 6 3.0554 -6.9170 1.2644 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5568 0.8904 31 1 2.8718 -3.6045 0.8905 32 1 2.8717 -3.6045 -0.8894 33 1 2.7744 -7.9715 -1.3646 34 1 2.6386 -6.3527 -2.0982 35 1 4.8488 -5.7337 -1.2446 36 1 4.9883 -7.2640 -2.1437 37 1 8.3056 -7.8215 -0.9743 38 1 5.2047 -7.4474 4.4544 39 1 2.6488 -6.3452 2.0986 40 1 2.7789 -7.9659 1.3713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275105190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:02 Heat of formation + Delta-G solvation = -291.846667 kcal Electronic energy + Delta-G solvation = -28209.273604 eV Core-core repulsion = 23921.649460 eV Total energy + Delta-G solvation = -4287.624144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22122 -40.70981 -39.10579 -38.21766 -37.28664 -36.99490 -36.89763 -35.86429 -33.94513 -33.08975 -32.66625 -27.60138 -27.32930 -25.76315 -23.73381 -23.12512 -22.85635 -20.92107 -19.95100 -19.23547 -19.03757 -19.00086 -18.43470 -17.84917 -17.57880 -17.33116 -17.06662 -16.65449 -16.52225 -16.15831 -15.65305 -15.17483 -14.95978 -14.77734 -14.61686 -14.43570 -14.37635 -13.74549 -13.71374 -13.49938 -13.16655 -13.08954 -12.89499 -12.79504 -12.77219 -12.69868 -12.59123 -12.37352 -12.20311 -12.14975 -12.08531 -11.84059 -11.72968 -11.63041 -11.44492 -11.10248 -10.61762 -10.08230 -8.24025 -6.37426 -0.72771 1.14279 1.27805 1.42081 1.44676 1.52798 1.65065 2.04683 2.06070 2.39362 2.86123 3.09392 3.11217 3.25268 3.53445 3.71555 3.80717 3.93235 4.07832 4.15122 4.20052 4.29351 4.39177 4.59485 4.63788 4.67812 4.77338 4.80248 4.87633 5.06361 5.18891 5.30824 5.31783 5.53400 5.59495 5.65127 5.70768 6.09132 6.76119 6.94792 7.01801 7.32654 8.87837 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.003644 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.313567 B = 7681.702666 C = 8225.978936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.592 4.592 11 S 2.616 3.384 12 O -0.984 6.984 13 O -0.989 6.989 14 N -0.995 5.995 15 C 0.111 3.889 16 C -0.122 4.122 17 C -0.061 4.061 18 H 0.138 0.862 19 C 0.493 3.507 20 O -0.549 6.549 21 O -0.507 6.507 22 C -0.088 4.088 23 H 0.125 0.875 24 C 0.499 3.501 25 O -0.536 6.536 26 O -0.510 6.510 27 C 0.133 3.867 28 H 0.267 0.733 29 H 0.008 0.992 30 H 0.006 0.994 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.426 0.574 38 H 0.429 0.571 39 H 0.106 0.894 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.709 -18.684 -0.859 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.092 0.908 9 C -0.018 4.018 10 C -0.724 4.724 11 S 2.713 3.287 12 O -0.975 6.975 13 O -0.979 6.979 14 N -0.832 5.832 15 C -0.013 4.013 16 C -0.161 4.161 17 C -0.080 4.080 18 H 0.155 0.845 19 C 0.337 3.663 20 O -0.439 6.439 21 O -0.320 6.320 22 C -0.109 4.109 23 H 0.143 0.857 24 C 0.341 3.659 25 O -0.426 6.426 26 O -0.324 6.324 27 C 0.007 3.993 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.024 0.976 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.288 0.712 38 H 0.291 0.709 39 H 0.124 0.876 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.369 -18.732 -1.007 22.469 hybrid contribution 1.656 1.193 0.845 2.209 sum 14.025 -17.538 -0.162 22.457 Atomic orbital electron populations 1.70087 1.07974 1.28311 1.50916 1.26054 0.95790 1.03656 0.94470 0.85433 0.78196 0.77679 0.79364 1.18805 1.21015 1.19025 1.21484 0.93907 0.90874 1.51428 0.90775 1.18809 0.93607 0.92994 0.96401 1.30444 1.12838 1.16827 1.12292 1.04773 0.74905 0.76077 0.72905 1.93509 1.72156 1.85507 1.46286 1.93506 1.72416 1.85512 1.46508 1.57724 1.58310 1.54778 1.12425 1.21805 0.92878 1.02536 0.84097 1.22045 0.95325 1.02384 0.96314 1.20916 0.86537 1.04761 0.95809 0.84473 1.23343 0.91619 0.73279 0.78078 1.90708 1.73019 1.42600 1.37562 1.84443 1.27513 1.73081 1.46952 1.21408 0.97413 1.03141 0.88891 0.85717 1.23001 0.77583 0.80047 0.85239 1.90682 1.34261 1.30072 1.87609 1.84510 1.68534 1.62408 1.16944 1.21413 0.88794 1.03063 0.86005 0.92428 0.97353 0.97566 0.84302 0.83797 0.87738 0.87842 0.90125 0.85767 0.71242 0.70933 0.87584 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.05 4.98 29.85 0.15 1.20 16 10 C -0.59 -20.80 6.12 71.98 0.44 -20.36 16 11 S 2.62 84.54 5.41 -56.49 -0.31 84.24 16 12 O -0.98 -36.89 16.72 -127.65 -2.13 -39.03 16 13 O -0.99 -38.04 16.73 -127.65 -2.14 -40.17 16 14 N -0.99 -20.82 3.22 -513.09 -1.65 -22.47 16 15 C 0.11 1.63 6.31 86.36 0.55 2.17 16 16 C -0.12 -1.43 5.30 30.67 0.16 -1.27 16 17 C -0.06 -0.91 1.79 -11.51 -0.02 -0.93 16 18 H 0.14 1.63 8.13 -2.38 -0.02 1.61 16 19 C 0.49 9.27 6.60 71.23 0.47 9.74 16 20 O -0.55 -14.42 14.79 29.01 0.43 -14.00 16 21 O -0.51 -6.53 13.30 -51.38 -0.68 -7.21 16 22 C -0.09 -1.58 1.98 -11.46 -0.02 -1.60 16 23 H 0.12 2.32 8.13 -2.39 -0.02 2.30 16 24 C 0.50 10.31 6.61 71.24 0.47 10.78 16 25 O -0.54 -13.54 14.79 29.00 0.43 -13.11 16 26 O -0.51 -8.74 13.35 -51.41 -0.69 -9.43 16 27 C 0.13 2.43 5.52 86.36 0.48 2.91 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 32 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.63 7.09 -2.39 -0.02 1.61 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.12 0.90 8.08 -2.38 -0.02 0.88 16 37 H 0.43 2.50 9.10 -74.06 -0.67 1.83 16 38 H 0.43 3.74 9.10 -74.06 -0.67 3.06 16 39 H 0.11 2.16 7.11 -2.39 -0.02 2.14 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -84.99 352.03 -1.31 -86.30 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -0.25 Total: 11.65 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.37 Total: -25.86 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.37 Total: -78.16 kcal Atomic # 8 Polarization: -118.16 SS G_CDS: -4.78 Total: -122.94 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 84.54 SS G_CDS: -0.31 Total: 84.24 kcal Total: -84.99 -1.31 -86.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275105190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.544 kcal (2) G-P(sol) polarization free energy of solvation -84.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -290.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds