Wall clock time and date at job start Tue Mar 31 2020 18:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47410 * 19.84919 * 3 2 1 5 5 C 1.36939 * 120.00532 * 132.69861 * 4 3 2 6 6 H 1.07998 * 120.00130 * 223.20632 * 5 4 3 7 7 C 1.38980 * 119.99880 * 42.93730 * 5 4 3 8 8 N 1.31416 * 119.99624 * 0.21540 * 7 5 4 9 9 Si 1.86796 * 120.00111 * 180.22042 * 7 5 4 10 10 H 1.48496 * 109.46967 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47304 * 119.99537 * 9 7 5 12 12 H 1.48496 * 109.47218 * 239.99422 * 9 7 5 13 13 C 1.34780 * 119.99602 * 312.69360 * 4 3 2 14 14 O 1.21672 * 120.00102 * 174.82063 * 13 4 3 15 15 C 1.47176 * 120.00300 * 354.82836 * 13 4 3 16 16 C 1.37407 * 120.55946 * 169.48198 * 15 13 4 17 17 N 1.35961 * 121.60758 * 180.08680 * 16 15 13 18 18 C 1.46664 * 115.61357 * 177.05388 * 17 16 15 19 19 C 1.53132 * 110.48829 * 143.41796 * 18 17 16 20 20 S 1.82064 * 107.02931 * 57.84173 * 19 18 17 21 21 O 1.42094 * 110.78561 * 198.29291 * 20 19 18 22 22 O 1.42104 * 110.81415 * 60.71629 * 20 19 18 23 23 N 1.65359 * 102.76542 * 309.50039 * 20 19 18 24 24 C 1.31316 * 122.52541 * 23.29396 * 23 20 19 25 25 C 1.42852 * 114.92793 * 179.97438 * 24 23 20 26 26 C 1.34934 * 120.56615 * 177.22795 * 25 24 23 27 27 H 4.40637 * 5.51338 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47386 * 259.83891 * 3 2 1 29 29 H 1.09003 * 109.46813 * 139.84492 * 3 2 1 30 30 H 0.97003 * 119.99464 * 180.02562 * 8 7 5 31 31 H 1.07994 * 119.19366 * 0.10983 * 16 15 13 32 32 H 1.09002 * 109.30112 * 263.72820 * 18 17 16 33 33 H 1.09003 * 109.30271 * 23.10258 * 18 17 16 34 34 H 1.08996 * 109.94368 * 298.46261 * 19 18 17 35 35 H 1.09009 * 110.01321 * 177.25981 * 19 18 17 36 36 H 1.08000 * 119.71663 * 357.50680 * 25 24 23 37 37 H 1.08005 * 120.76620 * 180.29249 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2982 -0.4690 5 6 4.1215 -1.3569 -1.4169 6 1 4.0460 -2.0615 -2.2319 7 6 5.2171 -0.5060 -1.3332 8 7 5.3084 0.3521 -0.3421 9 14 6.5598 -0.5818 -2.6297 10 1 6.2225 -1.6250 -3.6312 11 1 6.6708 0.7361 -3.3052 12 1 7.8539 -0.9170 -1.9831 13 6 2.6139 -2.4355 0.0327 14 8 2.9514 -3.5120 -0.4228 15 6 1.6365 -2.3752 1.1314 16 6 0.9384 -3.4972 1.5078 17 7 0.0294 -3.4653 2.5184 18 6 -0.6879 -4.7204 2.7657 19 6 -0.9272 -4.9143 4.2658 20 16 -1.8660 -3.4669 4.8474 21 8 -1.7757 -3.3417 6.2600 22 8 -3.1155 -3.3727 4.1771 23 7 -0.9826 -2.1984 4.2603 24 6 -0.1814 -2.3145 3.2264 25 6 0.5023 -1.1159 2.8568 26 6 1.3957 -1.1195 1.8456 27 1 -1.0497 -0.0003 -0.0003 28 1 3.0093 0.1821 1.0115 29 1 3.0090 0.7863 -0.6627 30 1 6.0730 0.9463 -0.2839 31 1 1.1163 -4.4272 0.9884 32 1 -1.6470 -4.6953 2.2483 33 1 -0.0980 -5.5539 2.3843 34 1 0.0267 -4.9738 4.7898 35 1 -1.5027 -5.8241 4.4372 36 1 0.3058 -0.2000 3.3943 37 1 1.9179 -0.2162 1.5665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281462871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:23 Heat of formation + Delta-G solvation = 81.327277 kcal Electronic energy + Delta-G solvation = -26747.284121 eV Core-core repulsion = 22815.443684 eV Total energy + Delta-G solvation = -3931.840437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.31830 -39.21582 -36.90902 -36.26452 -35.76133 -35.11616 -34.63524 -33.14560 -31.53610 -31.00523 -29.35781 -27.24167 -25.40918 -25.19102 -23.73412 -22.78500 -20.18209 -19.24283 -18.35733 -18.04799 -17.88997 -16.99720 -16.97935 -16.37297 -15.89926 -15.51618 -15.43855 -15.16900 -14.87732 -14.56457 -14.20337 -13.89137 -13.64005 -13.46632 -12.88720 -12.86713 -12.73458 -12.55399 -11.97654 -11.95358 -11.87626 -11.81388 -11.34869 -11.17173 -11.04145 -10.93005 -10.81208 -10.63243 -10.47361 -10.17025 -9.64020 -9.19162 -8.99134 -8.94649 -8.04728 -7.80194 -6.66644 -4.35441 0.28557 0.74147 1.09116 1.94201 2.84798 2.91997 2.97118 3.05580 3.13807 3.18656 3.25897 3.59413 3.78542 3.93794 4.01890 4.17538 4.31831 4.41084 4.57465 4.59567 4.67529 4.76343 4.92392 4.96661 5.08347 5.12451 5.20020 5.46345 5.72175 5.94331 6.05829 6.22573 6.26254 6.31581 6.50405 6.58042 7.17605 7.29024 7.79351 7.94927 8.13335 8.82589 8.97260 9.57780 10.43334 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.003235 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.551713 B = 8652.957289 C = 9044.967786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.213 3.787 4 N -0.427 5.427 5 C -0.311 4.311 6 H 0.096 0.904 7 C 0.043 3.957 8 N -0.879 5.879 9 Si 0.931 3.069 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.519 3.481 14 O -0.572 6.572 15 C -0.179 4.179 16 C 0.145 3.855 17 N -0.506 5.506 18 C 0.100 3.900 19 C -0.681 4.681 20 S 2.550 3.450 21 O -0.950 6.950 22 O -0.970 6.970 23 N -0.976 5.976 24 C 0.517 3.483 25 C -0.191 4.191 26 C -0.016 4.016 27 H 0.213 0.787 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.275 0.725 31 H 0.181 0.819 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -4.221 3.323 8.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.185 4.185 3 C 0.091 3.909 4 N -0.144 5.144 5 C -0.439 4.439 6 H 0.114 0.886 7 C -0.162 4.162 8 N -0.515 5.515 9 Si 0.757 3.243 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.308 3.692 14 O -0.457 6.457 15 C -0.188 4.188 16 C 0.018 3.982 17 N -0.202 5.202 18 C -0.022 4.022 19 C -0.806 4.806 20 S 2.637 3.363 21 O -0.940 6.940 22 O -0.959 6.959 23 N -0.835 5.835 24 C 0.265 3.735 25 C -0.215 4.215 26 C -0.038 4.038 27 H 0.230 0.770 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.198 0.802 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.051 -4.228 4.323 10.068 hybrid contribution 0.907 -0.971 -0.946 1.631 sum -7.144 -5.199 3.377 9.459 Atomic orbital electron populations 1.24914 0.95854 0.99733 1.02026 1.23861 0.95697 1.00615 0.98360 1.19117 0.79773 0.90182 1.01872 1.43173 1.33150 1.01941 1.36157 1.19530 0.97416 1.22163 1.04761 0.88595 1.25585 0.97742 0.95700 0.97215 1.69780 1.30959 1.20811 1.29984 0.85789 0.80119 0.78372 0.80063 1.19014 1.20468 1.20360 1.17494 0.83551 0.85148 0.83042 1.90660 1.64210 1.28205 1.62575 1.21077 1.02792 0.92636 1.02288 1.22279 0.87400 1.00936 0.87554 1.45004 1.34930 1.10627 1.29607 1.21889 1.00040 0.85708 0.94606 1.31074 1.18134 1.26709 1.04647 1.07203 0.77216 0.75298 0.76615 1.93570 1.87388 1.84071 1.28929 1.93584 1.41992 1.84447 1.75835 1.75179 1.35931 1.44953 1.27453 1.19157 0.86224 0.84708 0.83437 1.21190 1.01688 0.96440 1.02208 1.24585 0.92247 0.98992 0.87989 0.77006 0.88551 0.86583 0.91499 0.80214 0.87428 0.85918 0.84277 0.83408 0.82172 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.84 17.40 29.55 0.51 -2.32 16 2 C -0.18 -2.89 8.74 -37.12 -0.32 -3.21 16 3 C 0.21 3.87 4.18 -6.83 -0.03 3.84 16 4 N -0.43 -9.28 2.78 -126.94 -0.35 -9.64 16 5 C -0.31 -7.50 8.83 -15.00 -0.13 -7.63 16 6 H 0.10 2.42 7.75 -52.49 -0.41 2.02 16 7 C 0.04 0.99 5.21 -17.45 -0.09 0.90 16 8 N -0.88 -20.21 11.51 55.50 0.64 -19.57 16 9 Si 0.93 18.45 29.55 -169.99 -5.02 13.42 16 10 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 11 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 12 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.52 10.88 7.25 -12.63 -0.09 10.79 16 14 O -0.57 -13.60 16.28 5.21 0.08 -13.52 16 15 C -0.18 -2.91 5.21 -103.27 -0.54 -3.44 16 16 C 0.15 1.92 9.67 -16.02 -0.16 1.77 16 17 N -0.51 -6.09 2.99 -115.32 -0.34 -6.44 16 18 C 0.10 0.87 6.20 -3.88 -0.02 0.84 16 19 C -0.68 -6.14 6.80 37.23 0.25 -5.88 16 20 S 2.55 36.60 6.05 -107.50 -0.65 35.95 16 21 O -0.95 -16.84 18.11 -57.50 -1.04 -17.88 16 22 O -0.97 -16.44 18.11 -57.50 -1.04 -17.48 16 23 N -0.98 -15.18 10.54 31.30 0.33 -14.85 16 24 C 0.52 7.32 7.28 -156.64 -1.14 6.18 16 25 C -0.19 -2.62 9.44 -38.97 -0.37 -2.99 16 26 C -0.02 -0.23 5.62 -37.45 -0.21 -0.44 16 27 H 0.21 2.29 7.80 -54.11 -0.42 1.87 16 28 H 0.10 1.67 6.10 -51.93 -0.32 1.35 16 29 H 0.12 2.27 6.98 -51.93 -0.36 1.90 16 30 H 0.27 6.00 8.31 -40.82 -0.34 5.67 16 31 H 0.18 2.07 7.25 -52.49 -0.38 1.69 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.12 0.70 7.61 -51.93 -0.40 0.31 16 34 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.15 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 37 H 0.20 2.83 2.52 -71.33 -0.18 2.65 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -33.03 325.89 -8.12 -41.15 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.29 Total: 5.52 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.34 Total: -1.59 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.27 Total: -50.49 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.00 Total: -48.88 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Atomic # 16 Polarization: 36.60 SS G_CDS: -0.65 Total: 35.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.03 -8.12 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281462871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.477 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds