Wall clock time and date at job start Tue Mar 31 2020 18:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47410 * 19.84919 * 3 2 1 5 5 C 1.36939 * 120.00532 * 132.69861 * 4 3 2 6 6 H 1.07998 * 120.00130 * 223.20632 * 5 4 3 7 7 C 1.38980 * 119.99880 * 42.93730 * 5 4 3 8 8 N 1.31416 * 119.99624 * 0.21540 * 7 5 4 9 9 Si 1.86796 * 120.00111 * 180.22042 * 7 5 4 10 10 H 1.48496 * 109.46967 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47304 * 119.99537 * 9 7 5 12 12 H 1.48496 * 109.47218 * 239.99422 * 9 7 5 13 13 C 1.34780 * 119.99602 * 312.69360 * 4 3 2 14 14 O 1.21672 * 120.00102 * 174.82063 * 13 4 3 15 15 C 1.47176 * 120.00300 * 354.82836 * 13 4 3 16 16 C 1.37407 * 120.55946 * 169.48198 * 15 13 4 17 17 N 1.35961 * 121.60758 * 180.08680 * 16 15 13 18 18 C 1.46664 * 115.61357 * 177.05388 * 17 16 15 19 19 C 1.53132 * 110.48829 * 143.41796 * 18 17 16 20 20 S 1.82064 * 107.02931 * 57.84173 * 19 18 17 21 21 O 1.42094 * 110.78561 * 198.29291 * 20 19 18 22 22 O 1.42104 * 110.81415 * 60.71629 * 20 19 18 23 23 N 1.65359 * 102.76542 * 309.50039 * 20 19 18 24 24 C 1.31316 * 122.52541 * 23.29396 * 23 20 19 25 25 C 1.42852 * 114.92793 * 179.97438 * 24 23 20 26 26 C 1.34934 * 120.56615 * 177.22795 * 25 24 23 27 27 H 4.40637 * 5.51338 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47386 * 259.83891 * 3 2 1 29 29 H 1.09003 * 109.46813 * 139.84492 * 3 2 1 30 30 H 0.97003 * 119.99464 * 180.02562 * 8 7 5 31 31 H 1.07994 * 119.19366 * 0.10983 * 16 15 13 32 32 H 1.09002 * 109.30112 * 263.72820 * 18 17 16 33 33 H 1.09003 * 109.30271 * 23.10258 * 18 17 16 34 34 H 1.08996 * 109.94368 * 298.46261 * 19 18 17 35 35 H 1.09009 * 110.01321 * 177.25981 * 19 18 17 36 36 H 1.08000 * 119.71663 * 357.50680 * 25 24 23 37 37 H 1.08005 * 120.76620 * 180.29249 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2982 -0.4690 5 6 4.1215 -1.3569 -1.4169 6 1 4.0460 -2.0615 -2.2319 7 6 5.2171 -0.5060 -1.3332 8 7 5.3084 0.3521 -0.3421 9 14 6.5598 -0.5818 -2.6297 10 1 6.2225 -1.6250 -3.6312 11 1 6.6708 0.7361 -3.3052 12 1 7.8539 -0.9170 -1.9831 13 6 2.6139 -2.4355 0.0327 14 8 2.9514 -3.5120 -0.4228 15 6 1.6365 -2.3752 1.1314 16 6 0.9384 -3.4972 1.5078 17 7 0.0294 -3.4653 2.5184 18 6 -0.6879 -4.7204 2.7657 19 6 -0.9272 -4.9143 4.2658 20 16 -1.8660 -3.4669 4.8474 21 8 -1.7757 -3.3417 6.2600 22 8 -3.1155 -3.3727 4.1771 23 7 -0.9826 -2.1984 4.2603 24 6 -0.1814 -2.3145 3.2264 25 6 0.5023 -1.1159 2.8568 26 6 1.3957 -1.1195 1.8456 27 1 -1.0497 -0.0003 -0.0003 28 1 3.0093 0.1821 1.0115 29 1 3.0090 0.7863 -0.6627 30 1 6.0730 0.9463 -0.2839 31 1 1.1163 -4.4272 0.9884 32 1 -1.6470 -4.6953 2.2483 33 1 -0.0980 -5.5539 2.3843 34 1 0.0267 -4.9738 4.7898 35 1 -1.5027 -5.8241 4.4372 36 1 0.3058 -0.2000 3.3943 37 1 1.9179 -0.2162 1.5665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281462871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:22 Heat of formation + Delta-G solvation = 57.562277 kcal Electronic energy + Delta-G solvation = -26748.314649 eV Core-core repulsion = 22815.443684 eV Total energy + Delta-G solvation = -3932.870964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42334 -40.63043 -38.12043 -37.69523 -36.97094 -36.44018 -35.73531 -34.45302 -33.10418 -31.98816 -30.56402 -28.66821 -26.93801 -26.12113 -24.93071 -23.92173 -21.55833 -20.38300 -19.67681 -19.28551 -19.06294 -18.26190 -18.08170 -17.46056 -17.13969 -16.99471 -16.59803 -16.45244 -16.15243 -15.80248 -15.56529 -15.21096 -14.77074 -14.48377 -14.29498 -13.95972 -13.89749 -13.45801 -13.41614 -13.22670 -13.15367 -13.10690 -12.92568 -12.72210 -12.39918 -12.11650 -12.07842 -11.87913 -11.78458 -11.42836 -10.88522 -10.67080 -10.56436 -10.15518 -9.58717 -9.06687 -8.40081 -6.15900 -0.76128 -0.32448 -0.08784 0.96477 1.43549 1.48762 1.59349 1.71085 1.75196 1.90338 2.01755 2.32796 2.59603 2.70617 2.82341 3.02850 3.12058 3.31922 3.44144 3.52865 3.64959 3.70353 3.83616 3.93925 4.12061 4.18138 4.34670 4.50155 4.60716 4.72741 4.90054 5.02498 5.11204 5.11981 5.24201 5.45392 5.47331 6.12439 6.20961 6.44509 6.64042 7.12313 7.30830 7.92777 8.68980 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.003235 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.551713 B = 8652.957289 C = 9044.967786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.218 4.218 3 C 0.225 3.775 4 N -0.444 5.444 5 C -0.341 4.341 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.893 5.893 9 Si 0.985 3.015 10 H -0.272 1.272 11 H -0.268 1.268 12 H -0.278 1.278 13 C 0.516 3.484 14 O -0.612 6.612 15 C -0.212 4.212 16 C 0.185 3.815 17 N -0.500 5.500 18 C 0.083 3.917 19 C -0.647 4.647 20 S 2.545 3.455 21 O -0.995 6.995 22 O -1.004 7.004 23 N -1.006 6.006 24 C 0.514 3.486 25 C -0.191 4.191 26 C -0.009 4.009 27 H 0.245 0.755 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.278 0.722 31 H 0.205 0.795 32 H 0.125 0.875 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.169 0.831 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 -5.906 3.564 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.219 4.219 3 C 0.103 3.897 4 N -0.162 5.162 5 C -0.469 4.469 6 H 0.090 0.910 7 C -0.191 4.191 8 N -0.529 5.529 9 Si 0.809 3.191 10 H -0.197 1.197 11 H -0.193 1.193 12 H -0.204 1.204 13 C 0.306 3.694 14 O -0.499 6.499 15 C -0.221 4.221 16 C 0.056 3.944 17 N -0.194 5.194 18 C -0.037 4.037 19 C -0.778 4.778 20 S 2.639 3.361 21 O -0.985 6.985 22 O -0.993 6.993 23 N -0.864 5.864 24 C 0.261 3.739 25 C -0.215 4.215 26 C -0.032 4.032 27 H 0.262 0.738 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.221 0.779 32 H 0.143 0.857 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.208 0.792 36 H 0.186 0.814 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.114 -5.830 4.611 11.760 hybrid contribution 1.114 -0.601 -0.973 1.596 sum -8.000 -6.431 3.638 10.890 Atomic orbital electron populations 1.25555 0.96253 0.97228 0.99656 1.23374 0.95252 1.02784 1.00517 1.18860 0.81633 0.87959 1.01210 1.43350 1.33221 1.03476 1.36126 1.19448 0.99283 1.22700 1.05463 0.91003 1.26160 0.98915 0.95225 0.98807 1.69835 1.31373 1.20947 1.30766 0.84989 0.77665 0.78435 0.78005 1.19655 1.19345 1.20353 1.18060 0.83654 0.84296 0.83353 1.90607 1.65796 1.29359 1.64150 1.20615 1.04284 0.94715 1.02478 1.22495 0.85189 1.00503 0.86200 1.45192 1.34316 1.11353 1.28561 1.22464 1.01531 0.85302 0.94407 1.30759 1.17904 1.24368 1.04746 1.06770 0.76984 0.76795 0.75510 1.93517 1.87914 1.85622 1.31476 1.93544 1.44020 1.85807 1.75910 1.75102 1.36156 1.47145 1.27980 1.19186 0.85892 0.85450 0.83375 1.21263 1.01348 0.97069 1.01796 1.24333 0.92437 0.98295 0.88091 0.73840 0.88314 0.88829 0.91198 0.77862 0.85662 0.81430 0.82695 0.79244 0.81356 0.79300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 17.40 74.32 1.29 -3.01 16 2 C -0.22 -6.79 8.74 31.13 0.27 -6.52 16 3 C 0.23 8.49 4.18 84.58 0.35 8.85 16 4 N -0.44 -20.02 2.78 -673.74 -1.87 -21.90 16 5 C -0.34 -17.17 8.83 84.07 0.74 -16.43 16 6 H 0.07 3.85 7.75 -2.91 -0.02 3.83 16 7 C 0.01 0.60 5.21 84.93 0.44 1.04 16 8 N -0.89 -42.06 11.51 21.67 0.25 -41.81 16 9 Si 0.98 38.53 29.55 68.60 2.03 40.56 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 12 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 13 C 0.52 21.92 7.25 86.59 0.63 22.55 16 14 O -0.61 -29.54 16.28 -4.26 -0.07 -29.60 16 15 C -0.21 -6.64 5.21 -18.99 -0.10 -6.74 16 16 C 0.18 4.30 9.67 83.86 0.81 5.11 16 17 N -0.50 -10.10 2.99 -518.75 -1.55 -11.65 16 18 C 0.08 0.99 6.20 86.39 0.54 1.52 16 19 C -0.65 -8.39 6.80 72.03 0.49 -7.90 16 20 S 2.55 68.22 6.05 -56.49 -0.34 67.88 16 21 O -1.00 -34.68 18.11 -127.69 -2.31 -36.99 16 22 O -1.00 -32.56 18.11 -127.69 -2.31 -34.87 16 23 N -1.01 -29.66 10.54 -54.90 -0.58 -30.24 16 24 C 0.51 13.29 7.28 135.08 0.98 14.28 16 25 C -0.19 -4.95 9.44 22.66 0.21 -4.73 16 26 C -0.01 -0.25 5.62 23.65 0.13 -0.12 16 27 H 0.25 4.39 7.80 -4.43 -0.03 4.36 16 28 H 0.10 3.57 6.10 -2.39 -0.01 3.56 16 29 H 0.09 3.86 6.98 -2.39 -0.02 3.85 16 30 H 0.28 12.33 8.31 -92.71 -0.77 11.56 16 31 H 0.20 3.83 7.25 -2.91 -0.02 3.81 16 32 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.17 0.69 7.61 -2.39 -0.02 0.67 16 34 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.19 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.19 5.53 2.52 -20.61 -0.05 5.48 16 Total: -1.00 -76.21 325.89 1.13 -75.08 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.09 Total: 15.62 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.80 Total: 7.91 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.75 Total: -105.59 kcal Atomic # 8 Polarization: -96.77 SS G_CDS: -4.70 Total: -101.46 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: 68.22 SS G_CDS: -0.34 Total: 67.88 kcal Total: -76.21 1.13 -75.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281462871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.645 kcal (2) G-P(sol) polarization free energy of solvation -76.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds