Wall clock time and date at job start Tue Mar 31 2020 19:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.50704 * 109.46995 * 344.45059 * 3 2 1 5 5 O 1.21281 * 120.00199 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99593 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99736 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46763 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47472 * 294.99516 * 8 7 6 10 10 N 1.46496 * 109.47184 * 55.00396 * 8 7 6 11 11 C 1.34779 * 119.99610 * 204.99814 * 10 8 7 12 12 O 1.21691 * 119.99992 * 359.97438 * 11 10 8 13 13 C 1.46372 * 120.00027 * 179.97438 * 11 10 8 14 14 H 1.08001 * 120.00385 * 0.02562 * 13 11 10 15 15 C 1.40054 * 120.00096 * 179.97438 * 13 11 10 16 16 N 1.30672 * 120.00148 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99981 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46849 * 60.00275 * 17 15 13 19 19 H 1.48501 * 109.46990 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47316 * 300.00762 * 17 15 13 21 21 C 1.50707 * 109.46685 * 175.00118 * 8 7 6 22 22 C 1.38241 * 119.98816 * 100.00119 * 21 8 7 23 23 C 1.38215 * 120.01083 * 179.97438 * 22 21 8 24 24 C 1.38349 * 119.98995 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.01610 * 180.02562 * 24 23 22 26 26 C 1.38354 * 119.96929 * 359.97438 * 24 23 22 27 27 C 1.38207 * 119.99096 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46659 * 224.45280 * 3 2 1 29 29 H 1.08999 * 109.47200 * 104.44871 * 3 2 1 30 30 H 0.97001 * 120.00150 * 359.97438 * 6 4 3 31 31 H 1.08994 * 109.47298 * 59.99923 * 7 6 4 32 32 H 1.08999 * 109.46890 * 299.99723 * 7 6 4 33 33 H 0.96996 * 120.00411 * 24.99171 * 10 8 7 34 34 H 0.96993 * 120.00031 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.99420 * 0.24790 * 22 21 8 36 36 H 1.07996 * 120.00049 * 180.02562 * 23 22 21 37 37 H 1.08008 * 120.00267 * 179.97438 * 26 24 23 38 38 H 1.08003 * 119.99786 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1109 -1.3680 0.3809 5 8 2.3232 -2.2563 0.6285 6 7 4.4361 -1.6044 0.4474 7 6 4.9250 -2.9351 0.8171 8 6 6.4550 -2.9343 0.8172 9 1 6.8184 -2.7650 -0.1963 10 7 6.9428 -1.8679 1.6954 11 6 8.1645 -1.3355 1.4944 12 8 8.8626 -1.7409 0.5838 13 6 8.6517 -0.2697 2.3715 14 1 8.0323 0.0898 3.1799 15 6 9.9215 0.2832 2.1630 16 7 10.6711 -0.1521 1.1852 17 14 10.5434 1.6429 3.2828 18 1 10.5930 1.1479 4.6820 19 1 11.9046 2.0534 2.8539 20 1 9.6269 2.8085 3.2023 21 6 6.9580 -4.2647 1.3154 22 6 7.3849 -5.2231 0.4152 23 6 7.8467 -6.4432 0.8716 24 6 7.8822 -6.7052 2.2296 25 17 8.4628 -8.2372 2.8036 26 6 7.4558 -5.7452 3.1300 27 6 6.9942 -4.5255 2.6725 28 1 2.9709 0.7344 0.7197 29 1 2.9712 0.2572 -0.9951 30 1 5.0661 -0.8938 0.2497 31 1 4.5625 -3.6685 0.0969 32 1 4.5614 -3.1923 1.8120 33 1 6.3864 -1.5450 2.4214 34 1 11.5503 0.2311 1.0406 35 1 7.3616 -5.0167 -0.6446 36 1 8.1805 -7.1917 0.1682 37 1 7.4829 -5.9493 4.1903 38 1 6.6609 -3.7761 3.3753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282331638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:32 Heat of formation + Delta-G solvation = -33.051604 kcal Electronic energy + Delta-G solvation = -25299.602080 eV Core-core repulsion = 21360.758097 eV Total energy + Delta-G solvation = -3938.843984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12552 -39.35071 -37.59310 -36.57977 -36.34037 -35.34681 -33.35549 -32.49864 -31.18388 -30.93590 -30.51224 -27.85909 -26.16288 -23.48400 -22.66560 -21.18788 -20.95817 -19.63234 -18.23673 -17.52059 -17.40546 -16.79316 -16.12221 -15.82050 -15.64828 -15.30175 -14.98456 -14.48448 -14.35433 -13.94912 -13.75833 -13.65945 -13.31912 -13.29272 -12.91151 -12.72484 -12.55903 -12.48046 -12.28491 -11.89371 -11.71864 -11.44106 -11.30332 -11.20580 -11.05831 -10.94489 -10.66704 -10.59792 -10.36690 -10.14039 -9.20190 -8.98886 -8.83256 -8.44621 -7.87288 -7.77927 -6.33184 -4.80150 1.30894 1.50356 2.23405 2.34067 2.36868 2.64302 3.06070 3.12916 3.13622 3.19350 3.71929 3.80527 3.97602 4.41297 4.47906 4.61531 4.90908 4.92725 4.95169 4.96851 5.03912 5.17056 5.37208 5.55317 5.56242 5.70545 5.74429 5.85794 6.01397 6.17447 6.25064 6.38192 6.45237 6.76667 6.98306 7.26786 7.29296 7.42833 7.65961 7.82595 8.00839 8.13688 8.88328 9.29043 10.42927 10.60840 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.005770 B = 0.004586 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4851.535255 B = 6103.535632 C =10276.094785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.222 3.778 3 C -0.047 4.047 4 C 0.519 3.481 5 O -0.537 6.537 6 N -0.715 5.715 7 C 0.119 3.881 8 C 0.180 3.820 9 H 0.097 0.903 10 N -0.760 5.760 11 C 0.555 3.445 12 O -0.572 6.572 13 C -0.544 4.544 14 H 0.067 0.933 15 C 0.090 3.910 16 N -0.764 5.764 17 Si 0.906 3.094 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.071 4.071 22 C -0.091 4.091 23 C -0.114 4.114 24 C -0.038 4.038 25 Cl -0.085 7.085 26 C -0.114 4.114 27 C -0.083 4.083 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.413 0.587 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.382 0.618 34 H 0.270 0.730 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -4.433 -0.234 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.097 4.097 3 C -0.089 4.089 4 C 0.302 3.698 5 O -0.414 6.414 6 N -0.367 5.367 7 C -0.005 4.005 8 C 0.073 3.927 9 H 0.114 0.886 10 N -0.416 5.416 11 C 0.360 3.640 12 O -0.454 6.454 13 C -0.581 4.581 14 H 0.085 0.915 15 C -0.131 4.131 16 N -0.392 5.392 17 Si 0.730 3.270 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.074 4.074 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.065 4.065 25 Cl -0.056 7.056 26 C -0.133 4.133 27 C -0.101 4.101 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.215 0.785 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.403 -5.479 -0.799 10.063 hybrid contribution 1.157 0.959 0.975 1.791 sum -7.246 -4.521 0.176 8.542 Atomic orbital electron populations 1.81187 1.12677 1.07658 1.08199 1.28096 0.94316 0.93537 0.93712 1.19179 0.83776 0.98270 1.07694 1.19972 0.82730 0.89143 0.77931 1.90792 1.55325 1.46209 1.49065 1.45870 1.06485 1.14584 1.69800 1.21672 0.93212 0.83956 1.01645 1.19661 0.90321 0.85485 0.97239 0.88557 1.46367 1.20713 1.39526 1.34961 1.18229 0.78415 0.82315 0.85064 1.90632 1.55647 1.64391 1.34711 1.20803 1.01757 1.20037 1.15517 0.91465 1.25670 0.96257 0.96506 0.94646 1.69984 1.08465 1.35593 1.25188 0.86466 0.78273 0.81321 0.80914 1.19314 1.20578 1.19250 1.20380 0.97911 0.95502 0.93603 1.20975 0.97742 0.92263 1.00041 1.20946 1.00871 0.97992 0.93430 1.20865 1.03586 0.87880 0.94144 1.98343 1.87618 1.30269 1.89399 1.20980 0.99899 0.93050 0.99339 1.20905 0.98216 0.95506 0.95493 0.84003 0.84183 0.75059 0.90358 0.90810 0.78543 0.91933 0.85168 0.85332 0.85359 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.89 18.54 42.15 0.78 -5.10 16 2 C 0.22 2.38 14.67 -20.76 -0.30 2.08 16 3 C -0.05 -0.29 6.19 -30.67 -0.19 -0.48 16 4 C 0.52 5.32 7.81 -10.99 -0.09 5.24 16 5 O -0.54 -8.00 16.03 5.56 0.09 -7.91 16 6 N -0.71 -7.03 5.39 -60.29 -0.32 -7.35 16 7 C 0.12 1.38 5.21 -4.04 -0.02 1.35 16 8 C 0.18 2.60 2.33 -69.08 -0.16 2.44 16 9 H 0.10 1.56 7.44 -51.93 -0.39 1.18 16 10 N -0.76 -12.86 3.75 -56.34 -0.21 -13.08 16 11 C 0.56 13.14 7.70 -12.99 -0.10 13.04 16 12 O -0.57 -15.99 14.68 5.20 0.08 -15.92 16 13 C -0.54 -13.37 9.54 -35.63 -0.34 -13.71 16 14 H 0.07 1.50 7.85 -52.49 -0.41 1.09 16 15 C 0.09 2.26 5.50 -17.36 -0.10 2.16 16 16 N -0.76 -20.97 11.83 55.55 0.66 -20.32 16 17 Si 0.91 18.42 29.56 -169.99 -5.02 13.40 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.07 -1.07 4.91 -104.62 -0.51 -1.59 16 22 C -0.09 -1.31 9.67 -39.59 -0.38 -1.69 16 23 C -0.11 -1.55 9.83 -39.55 -0.39 -1.94 16 24 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 25 Cl -0.08 -1.08 28.96 -51.86 -1.50 -2.58 16 26 C -0.11 -1.59 9.83 -39.55 -0.39 -1.98 16 27 C -0.08 -1.21 9.32 -39.59 -0.37 -1.58 16 28 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.41 3.73 8.14 -40.82 -0.33 3.39 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.38 5.64 8.58 -40.82 -0.35 5.29 16 34 H 0.27 6.82 8.29 -40.82 -0.34 6.48 16 35 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 38 H 0.13 1.77 7.71 -52.48 -0.40 1.37 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -35.20 363.62 -7.55 -42.75 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.98 Total: 8.07 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -3.59 Total: 2.57 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.90 Total: -45.85 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.20 -7.55 -42.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282331638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.697 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds