Wall clock time and date at job start Tue Mar 31 2020 19:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.50704 * 109.46995 * 344.45059 * 3 2 1 5 5 O 1.21281 * 120.00199 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99593 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99736 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46763 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47472 * 294.99516 * 8 7 6 10 10 N 1.46496 * 109.47184 * 55.00396 * 8 7 6 11 11 C 1.34779 * 119.99610 * 204.99814 * 10 8 7 12 12 O 1.21691 * 119.99992 * 359.97438 * 11 10 8 13 13 C 1.46372 * 120.00027 * 179.97438 * 11 10 8 14 14 H 1.08001 * 120.00385 * 0.02562 * 13 11 10 15 15 C 1.40054 * 120.00096 * 179.97438 * 13 11 10 16 16 N 1.30672 * 120.00148 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99981 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46849 * 60.00275 * 17 15 13 19 19 H 1.48501 * 109.46990 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47316 * 300.00762 * 17 15 13 21 21 C 1.50707 * 109.46685 * 175.00118 * 8 7 6 22 22 C 1.38241 * 119.98816 * 100.00119 * 21 8 7 23 23 C 1.38215 * 120.01083 * 179.97438 * 22 21 8 24 24 C 1.38349 * 119.98995 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.01610 * 180.02562 * 24 23 22 26 26 C 1.38354 * 119.96929 * 359.97438 * 24 23 22 27 27 C 1.38207 * 119.99096 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46659 * 224.45280 * 3 2 1 29 29 H 1.08999 * 109.47200 * 104.44871 * 3 2 1 30 30 H 0.97001 * 120.00150 * 359.97438 * 6 4 3 31 31 H 1.08994 * 109.47298 * 59.99923 * 7 6 4 32 32 H 1.08999 * 109.46890 * 299.99723 * 7 6 4 33 33 H 0.96996 * 120.00411 * 24.99171 * 10 8 7 34 34 H 0.96993 * 120.00031 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.99420 * 0.24790 * 22 21 8 36 36 H 1.07996 * 120.00049 * 180.02562 * 23 22 21 37 37 H 1.08008 * 120.00267 * 179.97438 * 26 24 23 38 38 H 1.08003 * 119.99786 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1109 -1.3680 0.3809 5 8 2.3232 -2.2563 0.6285 6 7 4.4361 -1.6044 0.4474 7 6 4.9250 -2.9351 0.8171 8 6 6.4550 -2.9343 0.8172 9 1 6.8184 -2.7650 -0.1963 10 7 6.9428 -1.8679 1.6954 11 6 8.1645 -1.3355 1.4944 12 8 8.8626 -1.7409 0.5838 13 6 8.6517 -0.2697 2.3715 14 1 8.0323 0.0898 3.1799 15 6 9.9215 0.2832 2.1630 16 7 10.6711 -0.1521 1.1852 17 14 10.5434 1.6429 3.2828 18 1 10.5930 1.1479 4.6820 19 1 11.9046 2.0534 2.8539 20 1 9.6269 2.8085 3.2023 21 6 6.9580 -4.2647 1.3154 22 6 7.3849 -5.2231 0.4152 23 6 7.8467 -6.4432 0.8716 24 6 7.8822 -6.7052 2.2296 25 17 8.4628 -8.2372 2.8036 26 6 7.4558 -5.7452 3.1300 27 6 6.9942 -4.5255 2.6725 28 1 2.9709 0.7344 0.7197 29 1 2.9712 0.2572 -0.9951 30 1 5.0661 -0.8938 0.2497 31 1 4.5625 -3.6685 0.0969 32 1 4.5614 -3.1923 1.8120 33 1 6.3864 -1.5450 2.4214 34 1 11.5503 0.2311 1.0406 35 1 7.3616 -5.0167 -0.6446 36 1 8.1805 -7.1917 0.1682 37 1 7.4829 -5.9493 4.1903 38 1 6.6609 -3.7761 3.3753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282331638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:31 Heat of formation + Delta-G solvation = -57.561077 kcal Electronic energy + Delta-G solvation = -25300.664891 eV Core-core repulsion = 21360.758097 eV Total energy + Delta-G solvation = -3939.906794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13559 -40.41557 -39.09017 -37.58921 -37.42748 -36.56442 -34.70807 -34.21316 -32.26962 -31.91829 -31.68086 -29.07684 -27.81913 -24.59590 -23.79186 -22.55226 -21.86388 -21.10872 -19.42290 -18.74548 -18.31443 -17.90214 -17.41797 -16.96083 -16.81103 -16.55476 -16.03300 -15.79826 -15.54839 -15.03967 -14.95866 -14.78380 -14.38724 -14.37649 -14.18697 -14.01672 -13.75637 -13.67581 -13.44309 -12.97650 -12.87107 -12.72656 -12.52964 -12.49201 -12.43654 -12.36575 -12.10870 -11.99031 -11.72677 -11.05921 -10.82801 -10.12967 -9.93868 -9.78505 -9.55638 -9.37647 -8.18863 -6.72708 0.18444 0.39561 1.15976 1.48191 1.49041 1.51578 1.59138 1.59870 1.82581 2.29769 2.36736 2.58148 2.70097 3.03520 3.11311 3.67735 3.83637 3.87937 3.89017 3.99281 4.17307 4.27691 4.46805 4.49582 4.53520 4.57375 4.72213 4.78194 4.91476 5.06167 5.25891 5.28255 5.40951 5.43231 5.60023 5.87982 6.00214 6.28733 6.36778 6.45814 6.63764 6.99995 7.19986 7.64874 8.61120 8.79530 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.005770 B = 0.004586 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4851.535255 B = 6103.535632 C =10276.094785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.037 4.037 4 C 0.522 3.478 5 O -0.587 6.587 6 N -0.707 5.707 7 C 0.132 3.868 8 C 0.190 3.810 9 H 0.078 0.922 10 N -0.739 5.739 11 C 0.552 3.448 12 O -0.620 6.620 13 C -0.567 4.567 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.819 5.819 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.251 1.251 21 C -0.089 4.089 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.048 4.048 25 Cl -0.073 7.073 26 C -0.120 4.120 27 C -0.095 4.095 28 H 0.184 0.816 29 H 0.183 0.817 30 H 0.420 0.580 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.397 0.603 34 H 0.270 0.730 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -3.411 0.725 7.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.073 4.073 3 C -0.078 4.078 4 C 0.308 3.692 5 O -0.467 6.467 6 N -0.359 5.359 7 C 0.007 3.993 8 C 0.084 3.916 9 H 0.096 0.904 10 N -0.394 5.394 11 C 0.355 3.645 12 O -0.506 6.506 13 C -0.604 4.604 14 H 0.106 0.894 15 C -0.178 4.178 16 N -0.448 5.448 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.175 1.175 21 C -0.092 4.092 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.074 4.074 25 Cl -0.045 7.045 26 C -0.138 4.138 27 C -0.113 4.113 28 H 0.201 0.799 29 H 0.200 0.800 30 H 0.257 0.743 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.533 -4.450 0.181 9.626 hybrid contribution 1.183 0.522 0.673 1.458 sum -7.350 -3.928 0.854 8.378 Atomic orbital electron populations 1.81205 1.14932 1.09723 1.10661 1.28865 0.95179 0.91597 0.91670 1.19497 0.80744 0.96357 1.11206 1.20537 0.82045 0.90080 0.76574 1.90789 1.56368 1.48207 1.51356 1.45786 1.06735 1.14022 1.69393 1.21449 0.90764 0.85126 1.01966 1.19623 0.92016 0.84509 0.95482 0.90374 1.45829 1.18947 1.39349 1.35280 1.18343 0.79647 0.82232 0.84229 1.90603 1.57654 1.65808 1.36524 1.21346 1.02367 1.20456 1.16182 0.89436 1.26721 0.96441 0.98817 0.95807 1.70155 1.09088 1.37804 1.27778 0.85292 0.77544 0.78314 0.78548 1.18671 1.20908 1.17490 1.20498 0.98709 0.95822 0.94151 1.21199 0.97811 0.92579 1.00663 1.21196 1.00332 0.98169 0.93869 1.21037 1.03514 0.88477 0.94412 1.98344 1.87444 1.29403 1.89275 1.21212 0.99467 0.92820 1.00314 1.21059 0.98657 0.96130 0.95468 0.79911 0.79955 0.74250 0.89986 0.90651 0.76882 0.91974 0.84175 0.83506 0.83740 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.50 18.54 20.01 0.37 -13.13 16 2 C 0.24 4.82 14.67 89.44 1.31 6.13 16 3 C -0.04 -0.33 6.19 28.05 0.17 -0.15 16 4 C 0.52 9.51 7.81 87.66 0.68 10.20 16 5 O -0.59 -16.88 16.03 -3.03 -0.05 -16.93 16 6 N -0.71 -12.38 5.39 -463.05 -2.49 -14.87 16 7 C 0.13 2.87 5.21 86.38 0.45 3.32 16 8 C 0.19 5.40 2.33 44.25 0.10 5.50 16 9 H 0.08 2.55 7.44 -2.39 -0.02 2.53 16 10 N -0.74 -24.33 3.75 -450.39 -1.69 -26.01 16 11 C 0.55 26.05 7.70 86.36 0.67 26.71 16 12 O -0.62 -35.35 14.68 -4.32 -0.06 -35.42 16 13 C -0.57 -27.35 9.54 24.83 0.24 -27.11 16 14 H 0.09 3.72 7.85 -2.91 -0.02 3.69 16 15 C 0.04 1.88 5.50 85.31 0.47 2.35 16 16 N -0.82 -45.69 11.83 21.84 0.26 -45.43 16 17 Si 0.98 37.03 29.56 68.60 2.03 39.06 16 18 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 19 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 21 C -0.09 -2.66 4.91 -19.86 -0.10 -2.76 16 22 C -0.10 -2.94 9.67 22.26 0.22 -2.73 16 23 C -0.12 -3.12 9.83 22.29 0.22 -2.90 16 24 C -0.05 -1.29 6.32 22.32 0.14 -1.15 16 25 Cl -0.07 -1.77 28.96 -2.72 -0.08 -1.85 16 26 C -0.12 -3.23 9.83 22.29 0.22 -3.01 16 27 C -0.09 -2.70 9.32 22.26 0.21 -2.49 16 28 H 0.18 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.18 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.42 6.48 8.14 -92.71 -0.75 5.73 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.40 10.97 8.58 -92.71 -0.80 10.18 16 34 H 0.27 13.98 8.29 -92.71 -0.77 13.21 16 35 H 0.14 3.55 8.04 -2.91 -0.02 3.53 16 36 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.14 3.58 7.71 -2.91 -0.02 3.56 16 Total: -1.00 -79.57 363.62 2.87 -76.70 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.41 Total: 25.96 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.00 Total: 11.92 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -3.55 Total: -99.44 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.11 Total: -52.35 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -79.57 2.87 -76.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282331638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.137 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds