Wall clock time and date at job start Tue Mar 31 2020 17:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46920 * 269.99763 * 3 2 1 5 5 H 1.48508 * 109.47293 * 29.99733 * 3 2 1 6 6 H 1.48496 * 109.47089 * 149.99403 * 3 2 1 7 7 C 1.38813 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99802 * 205.30893 * 7 2 1 9 9 N 1.36940 * 119.99775 * 25.30310 * 7 2 1 10 10 C 1.46494 * 119.99803 * 228.56535 * 9 7 2 11 11 C 1.53000 * 117.50309 * 7.93056 * 10 9 7 12 12 C 1.53002 * 117.50296 * 299.26856 * 10 9 7 13 13 S 1.65594 * 119.99976 * 48.30027 * 9 7 2 14 14 O 1.42099 * 106.40457 * 203.53674 * 13 9 7 15 15 O 1.42105 * 106.40250 * 336.44743 * 13 9 7 16 16 C 1.76193 * 107.22213 * 89.99059 * 13 9 7 17 17 C 1.39361 * 119.52262 * 90.00367 * 16 13 9 18 18 C 1.36104 * 120.93667 * 180.02562 * 17 16 13 19 19 C 1.40536 * 119.73498 * 359.97438 * 18 17 16 20 20 N 1.33869 * 121.01634 * 179.97438 * 19 18 17 21 21 C 1.31766 * 119.66729 * 180.02562 * 20 19 18 22 22 O 1.35574 * 119.72916 * 179.97438 * 21 20 19 23 23 C 1.40432 * 120.53713 * 359.97438 * 21 20 19 24 24 N 1.31148 * 120.63200 * 0.02562 * 23 21 20 25 25 C 1.33868 * 119.82271 * 359.97438 * 24 23 21 26 26 C 1.36102 * 119.53158 * 269.72930 * 16 13 9 27 27 H 0.96999 * 119.99696 * 354.21496 * 1 2 3 28 28 H 1.09008 * 115.55015 * 153.60022 * 10 9 7 29 29 H 1.09003 * 117.49688 * 359.97438 * 11 10 9 30 30 H 1.08991 * 117.50200 * 145.02057 * 11 10 9 31 31 H 1.08995 * 117.50430 * 214.98360 * 12 10 9 32 32 H 1.09002 * 117.49792 * 359.97296 * 12 10 9 33 33 H 1.07999 * 119.52985 * 0.02562 * 17 16 13 34 34 H 1.08006 * 120.13551 * 180.02562 * 18 17 16 35 35 H 0.96696 * 114.00194 * 270.01981 * 22 21 20 36 36 H 1.07996 * 119.68052 * 180.02562 * 23 21 20 37 37 H 1.08004 * 120.12730 * 359.97438 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0125 -1.2469 0.4004 9 7 1.4240 -2.3314 -0.5058 10 6 1.4506 -3.5781 0.2629 11 6 1.9803 -3.5129 1.6968 12 6 2.8201 -4.1716 0.5995 13 16 0.6794 -2.2859 -1.9842 14 8 -0.2635 -3.3490 -1.9915 15 8 0.3228 -0.9294 -2.2124 16 6 1.8952 -2.6909 -3.1934 17 6 2.0846 -4.0227 -3.5576 18 6 3.0160 -4.3680 -4.4880 19 6 3.7998 -3.3708 -5.0931 20 7 4.7236 -3.6816 -6.0108 21 6 5.4440 -2.7252 -6.5609 22 8 6.3803 -3.0386 -7.4900 23 6 5.2500 -1.3841 -6.1925 24 7 4.3497 -1.0611 -5.2953 25 6 3.6066 -2.0168 -4.7238 26 6 2.6321 -1.6982 -3.7625 27 1 -0.4850 0.8358 0.0847 28 1 0.6370 -4.2742 0.0581 29 1 2.3095 -2.5423 2.0680 30 1 1.5156 -4.1661 2.4352 31 1 2.9075 -5.2579 0.6165 32 1 3.7013 -3.6346 0.2486 33 1 1.4838 -4.7917 -3.0949 34 1 3.1517 -5.4042 -4.7608 35 1 7.2560 -3.2178 -7.1211 36 1 5.8480 -0.6113 -6.6525 37 1 2.4710 -0.6700 -3.4739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294488345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:58 Heat of formation + Delta-G solvation = 5.695578 kcal Electronic energy + Delta-G solvation = -26906.647209 eV Core-core repulsion = 22971.527136 eV Total energy + Delta-G solvation = -3935.120073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42974 -38.40601 -37.27912 -36.51931 -35.75992 -34.58837 -34.22075 -33.41061 -30.77797 -30.51006 -29.99527 -25.24986 -25.07151 -24.14019 -22.24119 -21.67443 -20.69614 -19.82555 -18.98649 -18.54411 -18.14130 -16.68858 -16.45673 -16.11867 -15.75472 -15.37613 -15.18728 -14.49659 -14.37589 -14.20046 -14.01549 -13.73059 -13.24828 -13.01269 -12.42481 -12.11432 -11.92461 -11.79568 -11.72595 -11.68188 -11.54800 -11.47133 -11.21886 -10.92735 -10.71724 -10.52713 -10.45150 -10.36032 -10.08111 -9.86198 -9.46926 -9.14240 -8.88131 -8.78523 -8.48039 -7.67435 -6.68363 -4.27936 0.13781 0.46536 1.76222 1.97211 2.63646 3.14156 3.20699 3.20791 3.25088 3.92439 4.01822 4.05351 4.18403 4.45444 4.56577 4.62116 4.78949 4.79855 5.18255 5.22345 5.26698 5.46246 5.59646 5.63282 5.68365 5.75270 5.91844 6.09619 6.14898 6.20595 6.23598 6.33555 6.55467 6.65946 6.76247 6.90461 6.99796 7.24819 7.29771 7.36640 7.63451 8.04357 8.72049 9.14318 10.35826 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.004796 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.362401 B = 5836.518026 C = 6676.481914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.061 3.939 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.274 4.274 8 H 0.086 0.914 9 N -0.781 5.781 10 C 0.096 3.904 11 C -0.162 4.162 12 C -0.214 4.214 13 S 2.540 3.460 14 O -1.007 7.007 15 O -0.939 6.939 16 C -0.643 4.643 17 C -0.011 4.011 18 C -0.120 4.120 19 C 0.128 3.872 20 N -0.456 5.456 21 C 0.289 3.711 22 O -0.476 6.476 23 C 0.057 3.943 24 N -0.395 5.395 25 C 0.047 3.953 26 C 0.029 3.971 27 H 0.284 0.716 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.404 0.596 36 H 0.178 0.822 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.086 -4.282 -4.044 11.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.159 4.159 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.423 4.423 8 H 0.103 0.897 9 N -0.602 5.602 10 C -0.013 4.013 11 C -0.201 4.201 12 C -0.254 4.254 13 S 2.639 3.361 14 O -0.997 6.997 15 O -0.927 6.927 16 C -0.718 4.718 17 C -0.032 4.032 18 C -0.140 4.140 19 C 0.004 3.996 20 N -0.181 5.181 21 C 0.092 3.908 22 O -0.282 6.282 23 C -0.122 4.122 24 N -0.109 5.109 25 C -0.077 4.077 26 C 0.009 3.991 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.262 0.738 36 H 0.195 0.805 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.401 -4.148 -4.947 10.595 hybrid contribution 1.595 0.423 -0.396 1.697 sum 9.996 -3.725 -5.343 11.931 Atomic orbital electron populations 1.69812 1.07292 1.30121 1.32268 1.25732 0.94995 1.00907 0.94298 0.86037 0.79488 0.80557 0.79399 1.19113 1.20419 1.19148 1.19084 0.99345 0.85581 1.38328 0.89660 1.52495 1.72710 1.11770 1.23184 1.21409 0.95545 0.88933 0.95455 1.23097 1.03182 1.02666 0.91135 1.23372 0.97028 0.99062 1.05903 1.12047 0.77727 0.73536 0.72833 1.93297 1.61730 1.57848 1.86788 1.93442 1.81188 1.33625 1.84442 1.32798 1.21705 0.99043 1.18284 1.20738 0.93960 0.95303 0.93198 1.20794 0.96323 0.98661 0.98252 1.19347 0.93939 0.93160 0.93195 1.68154 1.06027 1.36867 1.07087 1.20474 0.91778 0.89602 0.88983 1.84755 1.21604 1.91195 1.30631 1.24084 0.97459 0.95478 0.95150 1.68664 1.02258 1.34983 1.04986 1.19763 0.98478 0.89896 0.99529 1.20674 0.88611 1.00650 0.89202 0.90554 0.86079 0.87301 0.89635 0.89646 0.89041 0.83739 0.84228 0.73760 0.80520 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.78 11.52 55.49 0.64 -19.14 16 2 C 0.06 1.47 4.00 -17.43 -0.07 1.40 16 3 Si 0.92 19.00 29.63 -169.99 -5.04 13.96 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.27 -6.34 7.69 -15.06 -0.12 -6.45 16 8 H 0.09 1.86 7.72 -52.49 -0.41 1.45 16 9 N -0.78 -17.64 3.05 -53.42 -0.16 -17.80 16 10 C 0.10 1.86 6.38 -67.93 -0.43 1.42 16 11 C -0.16 -2.72 9.84 -26.69 -0.26 -2.98 16 12 C -0.21 -3.44 10.29 -26.69 -0.27 -3.71 16 13 S 2.54 60.37 5.44 -107.50 -0.58 59.78 16 14 O -1.01 -25.26 16.01 -57.17 -0.92 -26.17 16 15 O -0.94 -25.04 13.20 -57.17 -0.75 -25.80 16 16 C -0.64 -13.20 5.94 -39.93 -0.24 -13.44 16 17 C -0.01 -0.20 9.42 -39.93 -0.38 -0.58 16 18 C -0.12 -1.98 9.98 -39.48 -0.39 -2.38 16 19 C 0.13 2.24 6.59 -84.80 -0.56 1.69 16 20 N -0.46 -7.34 10.49 -10.87 -0.11 -7.45 16 21 C 0.29 3.87 7.76 -16.75 -0.13 3.73 16 22 O -0.48 -4.77 13.56 -18.42 -0.25 -5.02 16 23 C 0.06 0.75 11.16 -17.02 -0.19 0.56 16 24 N -0.39 -6.68 10.45 -10.66 -0.11 -6.79 16 25 C 0.05 0.88 6.59 -84.80 -0.56 0.32 16 26 C 0.03 0.59 9.43 -39.48 -0.37 0.22 16 27 H 0.28 6.95 8.32 -40.82 -0.34 6.61 16 28 H 0.12 2.31 7.38 -51.92 -0.38 1.93 16 29 H 0.11 1.95 6.96 -51.93 -0.36 1.59 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.14 2.36 7.57 -52.49 -0.40 1.96 16 34 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 35 H 0.40 1.83 9.06 45.56 0.41 2.24 16 36 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.16 3.21 7.54 -52.48 -0.40 2.82 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -32.01 334.83 -9.00 -41.00 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.78 Total: 8.59 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.97 Total: -20.20 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.25 Total: -51.18 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -1.92 Total: -57.00 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.04 Total: 13.96 kcal Atomic # 16 Polarization: 60.37 SS G_CDS: -0.58 Total: 59.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.01 -9.00 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294488345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.696 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds