Wall clock time and date at job start Tue Mar 31 2020 17:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46920 * 269.99763 * 3 2 1 5 5 H 1.48508 * 109.47293 * 29.99733 * 3 2 1 6 6 H 1.48496 * 109.47089 * 149.99403 * 3 2 1 7 7 C 1.38813 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99802 * 205.30893 * 7 2 1 9 9 N 1.36940 * 119.99775 * 25.30310 * 7 2 1 10 10 C 1.46494 * 119.99803 * 228.56535 * 9 7 2 11 11 C 1.53000 * 117.50309 * 7.93056 * 10 9 7 12 12 C 1.53002 * 117.50296 * 299.26856 * 10 9 7 13 13 S 1.65594 * 119.99976 * 48.30027 * 9 7 2 14 14 O 1.42099 * 106.40457 * 203.53674 * 13 9 7 15 15 O 1.42105 * 106.40250 * 336.44743 * 13 9 7 16 16 C 1.76193 * 107.22213 * 89.99059 * 13 9 7 17 17 C 1.39361 * 119.52262 * 90.00367 * 16 13 9 18 18 C 1.36104 * 120.93667 * 180.02562 * 17 16 13 19 19 C 1.40536 * 119.73498 * 359.97438 * 18 17 16 20 20 N 1.33869 * 121.01634 * 179.97438 * 19 18 17 21 21 C 1.31766 * 119.66729 * 180.02562 * 20 19 18 22 22 O 1.35574 * 119.72916 * 179.97438 * 21 20 19 23 23 C 1.40432 * 120.53713 * 359.97438 * 21 20 19 24 24 N 1.31148 * 120.63200 * 0.02562 * 23 21 20 25 25 C 1.33868 * 119.82271 * 359.97438 * 24 23 21 26 26 C 1.36102 * 119.53158 * 269.72930 * 16 13 9 27 27 H 0.96999 * 119.99696 * 354.21496 * 1 2 3 28 28 H 1.09008 * 115.55015 * 153.60022 * 10 9 7 29 29 H 1.09003 * 117.49688 * 359.97438 * 11 10 9 30 30 H 1.08991 * 117.50200 * 145.02057 * 11 10 9 31 31 H 1.08995 * 117.50430 * 214.98360 * 12 10 9 32 32 H 1.09002 * 117.49792 * 359.97296 * 12 10 9 33 33 H 1.07999 * 119.52985 * 0.02562 * 17 16 13 34 34 H 1.08006 * 120.13551 * 180.02562 * 18 17 16 35 35 H 0.96696 * 114.00194 * 270.01981 * 22 21 20 36 36 H 1.07996 * 119.68052 * 180.02562 * 23 21 20 37 37 H 1.08004 * 120.12730 * 359.97438 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0125 -1.2469 0.4004 9 7 1.4240 -2.3314 -0.5058 10 6 1.4506 -3.5781 0.2629 11 6 1.9803 -3.5129 1.6968 12 6 2.8201 -4.1716 0.5995 13 16 0.6794 -2.2859 -1.9842 14 8 -0.2635 -3.3490 -1.9915 15 8 0.3228 -0.9294 -2.2124 16 6 1.8952 -2.6909 -3.1934 17 6 2.0846 -4.0227 -3.5576 18 6 3.0160 -4.3680 -4.4880 19 6 3.7998 -3.3708 -5.0931 20 7 4.7236 -3.6816 -6.0108 21 6 5.4440 -2.7252 -6.5609 22 8 6.3803 -3.0386 -7.4900 23 6 5.2500 -1.3841 -6.1925 24 7 4.3497 -1.0611 -5.2953 25 6 3.6066 -2.0168 -4.7238 26 6 2.6321 -1.6982 -3.7625 27 1 -0.4850 0.8358 0.0847 28 1 0.6370 -4.2742 0.0581 29 1 2.3095 -2.5423 2.0680 30 1 1.5156 -4.1661 2.4352 31 1 2.9075 -5.2579 0.6165 32 1 3.7013 -3.6346 0.2486 33 1 1.4838 -4.7917 -3.0949 34 1 3.1517 -5.4042 -4.7608 35 1 7.2560 -3.2178 -7.1211 36 1 5.8480 -0.6113 -6.6525 37 1 2.4710 -0.6700 -3.4739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294488345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:57 Heat of formation + Delta-G solvation = -21.008177 kcal Electronic energy + Delta-G solvation = -26907.805171 eV Core-core repulsion = 22971.527136 eV Total energy + Delta-G solvation = -3936.278035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.65232 -39.50714 -38.78942 -37.75283 -37.61934 -36.16070 -35.80249 -35.11895 -32.49209 -31.83774 -31.29319 -26.86886 -26.44474 -25.40457 -23.60501 -22.98889 -22.25041 -21.12717 -20.62823 -19.83739 -19.31917 -18.37823 -17.77475 -17.59087 -17.31557 -16.93695 -16.63297 -16.10134 -15.68476 -15.47448 -15.44261 -15.10583 -14.86441 -14.38973 -14.03594 -13.59214 -13.25564 -13.15710 -13.10698 -12.99554 -12.95926 -12.92019 -12.79844 -12.56397 -12.45019 -12.31602 -12.11141 -11.99474 -11.65588 -11.53691 -10.95616 -10.56763 -10.33560 -10.13512 -9.84671 -9.34651 -8.48057 -6.11196 -1.13708 -0.77419 0.01158 0.61691 1.37922 1.46474 1.54776 1.60242 2.14908 2.29401 2.60613 2.78503 2.87001 2.96590 2.98053 3.22456 3.38283 3.45599 3.68018 3.88014 4.04217 4.05680 4.16316 4.27156 4.38676 4.42413 4.46128 4.69458 4.80382 4.89164 4.92432 4.98217 5.08677 5.29148 5.44028 5.44723 5.57122 5.78855 5.92285 6.23918 6.42438 6.50756 6.96091 7.38570 8.56757 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.004796 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.362401 B = 5836.518026 C = 6676.481914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.022 3.978 3 Si 0.967 3.033 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.242 1.242 7 C -0.279 4.279 8 H 0.097 0.903 9 N -0.791 5.791 10 C 0.054 3.946 11 C -0.153 4.153 12 C -0.184 4.184 13 S 2.550 3.450 14 O -1.031 7.031 15 O -0.979 6.979 16 C -0.655 4.655 17 C -0.027 4.027 18 C -0.103 4.103 19 C 0.118 3.882 20 N -0.472 5.472 21 C 0.313 3.687 22 O -0.469 6.469 23 C 0.080 3.920 24 N -0.424 5.424 25 C 0.027 3.973 26 C 0.016 3.984 27 H 0.281 0.719 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.433 0.567 36 H 0.225 0.775 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.636 -5.503 -5.352 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.165 1.165 7 C -0.427 4.427 8 H 0.114 0.886 9 N -0.613 5.613 10 C -0.054 4.054 11 C -0.192 4.192 12 C -0.224 4.224 13 S 2.652 3.348 14 O -1.020 7.020 15 O -0.968 6.968 16 C -0.735 4.735 17 C -0.047 4.047 18 C -0.123 4.123 19 C -0.005 4.005 20 N -0.198 5.198 21 C 0.115 3.885 22 O -0.279 6.279 23 C -0.101 4.101 24 N -0.138 5.138 25 C -0.095 4.095 26 C -0.005 4.005 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.189 0.811 35 H 0.297 0.703 36 H 0.242 0.758 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.947 -5.387 -6.162 14.482 hybrid contribution 0.775 0.710 -0.316 1.098 sum 12.722 -4.677 -6.478 15.023 Atomic orbital electron populations 1.69892 1.08853 1.30457 1.35147 1.26532 0.95374 1.03774 0.93682 0.85329 0.79641 0.77472 0.78621 1.20730 1.19862 1.16506 1.19323 0.99610 0.85815 1.37987 0.88555 1.52365 1.73098 1.12907 1.22939 1.21666 0.97936 0.88429 0.97364 1.23171 1.02730 1.02773 0.90552 1.23394 0.94668 1.00725 1.03601 1.11124 0.77800 0.72369 0.73512 1.93247 1.63138 1.58172 1.87468 1.93388 1.82428 1.35583 1.85354 1.32229 1.21577 1.00675 1.19042 1.20817 0.95270 0.94232 0.94431 1.21084 0.94697 1.00001 0.96525 1.19452 0.94534 0.92720 0.93794 1.68232 1.06419 1.37669 1.07502 1.20697 0.91118 0.89388 0.87337 1.84720 1.22709 1.90983 1.29507 1.24896 0.95572 0.96694 0.92888 1.68680 1.03515 1.35000 1.06645 1.19659 0.98940 0.91035 0.99882 1.20530 0.89909 0.99582 0.90485 0.90888 0.86520 0.88640 0.86926 0.86416 0.89534 0.82692 0.81105 0.70307 0.75845 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.26 11.52 21.65 0.25 -44.01 16 2 C 0.02 1.12 4.00 84.86 0.34 1.46 16 3 Si 0.97 39.79 29.63 68.60 2.03 41.83 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.28 -13.28 7.69 84.03 0.65 -12.63 16 8 H 0.10 4.24 7.72 -2.91 -0.02 4.22 16 9 N -0.79 -36.98 3.05 -322.94 -0.99 -37.97 16 10 C 0.05 2.12 6.38 44.99 0.29 2.40 16 11 C -0.15 -5.00 9.84 30.62 0.30 -4.70 16 12 C -0.18 -5.62 10.29 30.62 0.31 -5.30 16 13 S 2.55 127.44 5.44 -56.49 -0.31 127.14 16 14 O -1.03 -54.12 16.01 -128.00 -2.05 -56.17 16 15 O -0.98 -55.66 13.20 -128.00 -1.69 -57.35 16 16 C -0.66 -27.89 5.94 22.04 0.13 -27.76 16 17 C -0.03 -0.97 9.42 22.04 0.21 -0.76 16 18 C -0.10 -3.25 9.98 22.33 0.22 -3.02 16 19 C 0.12 3.94 6.59 40.24 0.27 4.21 16 20 N -0.47 -13.67 10.49 -301.46 -3.16 -16.83 16 21 C 0.31 7.06 7.76 85.24 0.66 7.72 16 22 O -0.47 -6.90 13.56 -88.82 -1.20 -8.11 16 23 C 0.08 1.78 11.16 85.33 0.95 2.73 16 24 N -0.42 -13.69 10.45 -187.63 -1.96 -15.65 16 25 C 0.03 0.99 6.59 40.24 0.27 1.26 16 26 C 0.02 0.66 9.43 22.33 0.21 0.87 16 27 H 0.28 14.63 8.32 -92.71 -0.77 13.86 16 28 H 0.12 4.57 7.38 -2.38 -0.02 4.55 16 29 H 0.10 3.39 6.96 -2.39 -0.02 3.37 16 30 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 33 H 0.16 5.07 7.57 -2.91 -0.02 5.05 16 34 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.43 1.40 9.06 -74.06 -0.67 0.73 16 36 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.13 6.01 7.54 -2.91 -0.02 5.99 16 Total: -1.00 -73.51 334.83 -3.80 -77.31 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.47 Total: 23.35 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 4.81 Total: -33.53 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -5.86 Total: -114.45 kcal Atomic # 8 Polarization: -116.69 SS G_CDS: -4.94 Total: -121.63 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 127.44 SS G_CDS: -0.31 Total: 127.14 kcal Total: -73.51 -3.80 -77.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294488345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.297 kcal (2) G-P(sol) polarization free energy of solvation -73.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds