Wall clock time and date at job start Tue Mar 31 2020 18:14:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86796 * 119.99745 * 2 1
4 4 H 1.48499 * 109.47289 * 271.33395 * 3 2 1
5 5 H 1.48498 * 109.47176 * 31.33715 * 3 2 1
6 6 H 1.48505 * 109.47306 * 151.33785 * 3 2 1
7 7 C 1.38816 * 119.99990 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99815 * 346.01693 * 7 2 1
9 9 N 1.36935 * 119.99655 * 166.00925 * 7 2 1
10 10 C 1.46967 * 120.59716 * 327.74812 * 9 7 2
11 11 C 1.53372 * 108.63396 * 235.20086 * 10 9 7
12 12 N 1.46966 * 108.63602 * 310.57837 * 11 10 9
13 13 C 1.34782 * 120.59449 * 235.20333 * 12 11 10
14 14 O 1.21629 * 120.00387 * 184.07119 * 13 12 11
15 15 C 1.47269 * 119.99767 * 4.07145 * 13 12 11
16 16 C 1.35202 * 123.14130 * 173.23418 * 15 13 12
17 17 S 1.70941 * 108.82576 * 180.02562 * 16 15 13
18 18 C 1.70771 * 91.13139 * 0.02562 * 17 16 15
19 19 C 1.50693 * 124.71811 * 180.02562 * 18 17 16
20 20 F 1.39898 * 109.47380 * 269.95617 * 19 18 17
21 21 F 1.39903 * 109.47592 * 29.96030 * 19 18 17
22 22 F 1.39902 * 109.46864 * 149.95442 * 19 18 17
23 23 N 1.28646 * 110.55676 * 359.97438 * 18 17 16
24 24 C 1.46967 * 118.81288 * 55.47435 * 12 11 10
25 25 C 1.46967 * 120.59144 * 147.71867 * 9 7 2
26 26 H 0.96998 * 120.00205 * 0.02562 * 1 2 3
27 27 H 1.09003 * 109.61112 * 115.46008 * 10 9 7
28 28 H 1.08994 * 109.60666 * 354.94368 * 10 9 7
29 29 H 1.08992 * 109.61506 * 190.82944 * 11 10 9
30 30 H 1.09002 * 109.60998 * 70.31437 * 11 10 9
31 31 H 1.07995 * 125.58840 * 0.05728 * 16 15 13
32 32 H 1.08998 * 109.60827 * 64.26986 * 24 12 11
33 33 H 1.09005 * 109.60878 * 184.78388 * 24 12 11
34 34 H 1.09005 * 109.61283 * 244.54176 * 25 9 7
35 35 H 1.09002 * 109.61103 * 5.05792 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4693 2.0628 -1.3997
5 1 1.4619 2.6443 0.7281
6 1 3.5616 1.4323 0.6715
7 6 2.0102 -1.2022 -0.0005
8 1 1.4942 -2.1237 0.2251
9 7 3.3491 -1.2196 -0.2873
10 6 3.9254 -0.2484 -1.2278
11 6 4.6643 -1.0146 -2.3320
12 7 5.5507 -2.0045 -1.7042
13 6 6.8686 -2.0217 -1.9864
14 8 7.5794 -2.8909 -1.5188
15 6 7.4479 -0.9880 -2.8608
16 6 8.7764 -0.8645 -3.0795
17 16 9.0406 0.4462 -4.1446
18 6 7.3634 0.7541 -4.2358
19 6 6.7359 1.8540 -5.0527
20 9 6.6350 3.0128 -4.2753
21 9 7.5303 2.1129 -6.1748
22 9 5.4596 1.4575 -5.4664
23 7 6.7101 -0.0843 -3.5110
24 6 4.9735 -2.9792 -0.7679
25 6 4.2357 -2.2094 0.3406
26 1 -0.4850 0.8400 -0.0004
27 1 4.6257 0.3999 -0.7011
28 1 3.1288 0.3509 -1.6686
29 1 5.2559 -0.3190 -2.9270
30 1 3.9420 -1.5234 -2.9704
31 1 9.5447 -1.4916 -2.6519
32 1 4.2727 -3.6246 -1.2976
33 1 5.7696 -3.5812 -0.3296
34 1 4.9580 -1.7007 0.9790
35 1 3.6440 -2.9051 0.9356
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000331062336.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:14:01
Heat of formation + Delta-G solvation = -74.030846 kcal
Electronic energy + Delta-G solvation = -27454.189980 eV
Core-core repulsion = 22973.755969 eV
Total energy + Delta-G solvation = -4480.434011 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.066 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-50.56967 -48.14285 -47.98919 -41.13287 -38.99617 -37.12574 -34.00769 -32.06051
-31.50686 -30.73314 -28.08090 -27.46098 -25.45165 -23.47397 -23.17716 -22.09436
-20.68271 -20.12806 -18.96670 -18.68281 -18.48715 -18.11387 -16.89280 -16.14449
-15.89389 -15.67336 -15.06557 -14.95522 -14.83613 -14.56876 -14.47334 -14.37358
-14.18942 -14.14285 -14.13028 -13.89054 -13.68035 -13.06289 -12.84741 -12.63036
-12.43228 -12.11061 -12.02167 -11.29222 -11.05092 -10.46987 -10.43019 -10.31636
-10.22087 -10.06144 -9.67876 -9.57640 -9.17659 -8.84706 -8.35854 -6.90868
-5.97342 -3.41078 -0.25408 0.36470 0.87132 1.36677 1.88617 2.97594
3.13708 3.22216 3.29523 3.45455 3.47899 3.61860 3.86324 4.03531
4.49034 4.59316 4.63808 4.94084 5.08193 5.32083 5.64964 5.68081
5.84209 5.98080 6.05163 6.14427 6.40828 6.47520 6.54520 6.66242
6.83486 6.88522 7.62102 7.95460 8.17599 8.30771 8.88536 9.66801
10.05273 11.18452
Molecular weight = 335.07amu
Principal moments of inertia in cm(-1)
A = 0.012677 B = 0.004981 C = 0.003837
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2208.111445 B = 5620.256948 C = 7296.138076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.910 5.910
2 C 0.027 3.973
3 Si 0.887 3.113
4 H -0.285 1.285
5 H -0.302 1.302
6 H -0.271 1.271
7 C -0.263 4.263
8 H 0.086 0.914
9 N -0.607 5.607
10 C 0.115 3.885
11 C 0.036 3.964
12 N -0.572 5.572
13 C 0.584 3.416
14 O -0.547 6.547
15 C 0.024 3.976
16 C -0.206 4.206
17 S 0.319 5.681
18 C -0.109 4.109
19 C 0.555 3.445
20 F -0.159 7.159
21 F -0.165 7.165
22 F -0.150 7.150
23 N -0.373 5.373
24 C 0.092 3.908
25 C 0.136 3.864
26 H 0.264 0.736
27 H 0.028 0.972
28 H 0.081 0.919
29 H 0.149 0.851
30 H 0.068 0.932
31 H 0.204 0.796
32 H 0.072 0.928
33 H 0.087 0.913
34 H 0.028 0.972
35 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.770 2.684 -11.706 23.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.172 4.172
3 Si 0.718 3.282
4 H -0.213 1.213
5 H -0.230 1.230
6 H -0.196 1.196
7 C -0.392 4.392
8 H 0.104 0.896
9 N -0.332 5.332
10 C -0.011 4.011
11 C -0.088 4.088
12 N -0.301 5.301
13 C 0.368 3.632
14 O -0.426 6.426
15 C -0.112 4.112
16 C -0.348 4.348
17 S 0.575 5.425
18 C -0.386 4.386
19 C 0.497 3.503
20 F -0.140 7.140
21 F -0.146 7.146
22 F -0.131 7.131
23 N -0.089 5.089
24 C -0.032 4.032
25 C 0.010 3.990
26 H 0.073 0.927
27 H 0.046 0.954
28 H 0.099 0.901
29 H 0.164 0.836
30 H 0.087 0.913
31 H 0.221 0.779
32 H 0.090 0.910
33 H 0.105 0.895
34 H 0.046 0.954
35 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 21.197 2.867 -11.887 24.471
hybrid contribution -0.425 0.482 0.512 0.822
sum 20.771 3.350 -11.375 23.918
Atomic orbital electron populations
1.69766 1.05664 1.26620 1.53248 1.25380 0.95280 0.97709 0.98872
0.86904 0.79754 0.84298 0.77291 1.21277 1.23032 1.19567 1.18924
0.81814 0.94229 1.44214 0.89633 1.44323 1.05422 1.36028 1.47381
1.21743 0.96467 0.92384 0.90545 1.23892 0.94695 0.92912 0.97336
1.47919 1.06274 1.32937 1.42951 1.16975 0.82496 0.83288 0.80452
1.90786 1.60288 1.37140 1.54372 1.20673 0.89741 0.98374 1.02395
1.27009 1.01102 1.03589 1.03078 1.82851 1.02755 1.20958 1.35962
1.27296 0.98369 1.04813 1.08114 1.16852 0.76697 0.79625 0.77095
1.93297 1.95931 1.50164 1.74608 1.93252 1.73878 1.94408 1.53046
1.93311 1.39077 1.90445 1.90296 1.66641 1.34831 1.02252 1.05207
1.22472 0.97764 0.91156 0.91797 1.21398 0.92872 0.92268 0.92509
0.92654 0.95442 0.90082 0.83586 0.91344 0.77856 0.91013 0.89491
0.95432 0.90387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16
2 C 0.03 0.78 5.32 -17.43 -0.09 0.69 16
3 Si 0.89 22.66 24.31 -169.99 -4.13 18.53 16
4 H -0.29 -7.01 6.64 56.52 0.38 -6.63 16
5 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16
6 H -0.27 -6.85 6.39 56.52 0.36 -6.49 16
7 C -0.26 -7.36 10.04 -15.06 -0.15 -7.51 16
8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16
9 N -0.61 -14.61 2.70 -171.76 -0.46 -15.07 16
10 C 0.11 2.57 4.31 -3.59 -0.02 2.55 16
11 C 0.04 0.68 6.45 -3.60 -0.02 0.66 16
12 N -0.57 -10.38 2.94 -173.53 -0.51 -10.89 16
13 C 0.58 9.86 7.67 -12.59 -0.10 9.76 16
14 O -0.55 -9.94 16.15 5.25 0.08 -9.86 16
15 C 0.02 0.33 6.56 -84.52 -0.55 -0.22 16
16 C -0.21 -1.99 10.62 29.65 0.31 -1.67 16
17 S 0.32 2.30 22.57 -107.50 -2.43 -0.13 16
18 C -0.11 -1.20 6.71 -13.62 -0.09 -1.29 16
19 C 0.56 5.96 3.55 36.00 0.13 6.09 16
20 F -0.16 -1.81 17.30 2.25 0.04 -1.77 16
21 F -0.16 -1.46 16.98 2.25 0.04 -1.42 16
22 F -0.15 -1.89 17.21 2.25 0.04 -1.85 16
23 N -0.37 -5.16 6.50 -8.51 -0.06 -5.21 16
24 C 0.09 1.63 6.62 -3.36 -0.02 1.61 16
25 C 0.14 2.74 6.69 -3.36 -0.02 2.72 16
26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16
27 H 0.03 0.63 6.93 -51.93 -0.36 0.27 16
28 H 0.08 1.95 4.52 -51.93 -0.23 1.72 16
29 H 0.15 2.58 3.42 -96.15 -0.33 2.25 16
30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
31 H 0.20 1.56 8.04 -52.49 -0.42 1.14 16
32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
33 H 0.09 1.44 7.01 -51.93 -0.36 1.08 16
34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
35 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16
LS Contribution 313.95 15.07 4.73 4.73
Total: -1.00 -32.84 313.95 -5.52 -38.36
By element:
Atomic # 1 Polarization: 1.34 SS G_CDS: -3.01 Total: -1.68 kcal
Atomic # 6 Polarization: 14.01 SS G_CDS: -0.63 Total: 13.38 kcal
Atomic # 7 Polarization: -58.05 SS G_CDS: -0.25 Total: -58.30 kcal
Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal
Atomic # 9 Polarization: -5.15 SS G_CDS: 0.12 Total: -5.04 kcal
Atomic # 14 Polarization: 22.66 SS G_CDS: -4.13 Total: 18.53 kcal
Atomic # 16 Polarization: 2.30 SS G_CDS: -2.43 Total: -0.13 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.84 -5.52 -38.36 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331062336.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.669 kcal
(2) G-P(sol) polarization free energy of solvation -32.840 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds