Wall clock time and date at job start Tue Mar 31 2020 18:14:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86796 * 119.99745 * 2 1
4 4 H 1.48499 * 109.47289 * 271.33395 * 3 2 1
5 5 H 1.48498 * 109.47176 * 31.33715 * 3 2 1
6 6 H 1.48505 * 109.47306 * 151.33785 * 3 2 1
7 7 C 1.38816 * 119.99990 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99815 * 346.01693 * 7 2 1
9 9 N 1.36935 * 119.99655 * 166.00925 * 7 2 1
10 10 C 1.46967 * 120.59716 * 327.74812 * 9 7 2
11 11 C 1.53372 * 108.63396 * 235.20086 * 10 9 7
12 12 N 1.46966 * 108.63602 * 310.57837 * 11 10 9
13 13 C 1.34782 * 120.59449 * 235.20333 * 12 11 10
14 14 O 1.21629 * 120.00387 * 184.07119 * 13 12 11
15 15 C 1.47269 * 119.99767 * 4.07145 * 13 12 11
16 16 C 1.35202 * 123.14130 * 173.23418 * 15 13 12
17 17 S 1.70941 * 108.82576 * 180.02562 * 16 15 13
18 18 C 1.70771 * 91.13139 * 0.02562 * 17 16 15
19 19 C 1.50693 * 124.71811 * 180.02562 * 18 17 16
20 20 F 1.39898 * 109.47380 * 269.95617 * 19 18 17
21 21 F 1.39903 * 109.47592 * 29.96030 * 19 18 17
22 22 F 1.39902 * 109.46864 * 149.95442 * 19 18 17
23 23 N 1.28646 * 110.55676 * 359.97438 * 18 17 16
24 24 C 1.46967 * 118.81288 * 55.47435 * 12 11 10
25 25 C 1.46967 * 120.59144 * 147.71867 * 9 7 2
26 26 H 0.96998 * 120.00205 * 0.02562 * 1 2 3
27 27 H 1.09003 * 109.61112 * 115.46008 * 10 9 7
28 28 H 1.08994 * 109.60666 * 354.94368 * 10 9 7
29 29 H 1.08992 * 109.61506 * 190.82944 * 11 10 9
30 30 H 1.09002 * 109.60998 * 70.31437 * 11 10 9
31 31 H 1.07995 * 125.58840 * 0.05728 * 16 15 13
32 32 H 1.08998 * 109.60827 * 64.26986 * 24 12 11
33 33 H 1.09005 * 109.60878 * 184.78388 * 24 12 11
34 34 H 1.09005 * 109.61283 * 244.54176 * 25 9 7
35 35 H 1.09002 * 109.61103 * 5.05792 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4693 2.0628 -1.3997
5 1 1.4619 2.6443 0.7281
6 1 3.5616 1.4323 0.6715
7 6 2.0102 -1.2022 -0.0005
8 1 1.4942 -2.1237 0.2251
9 7 3.3491 -1.2196 -0.2873
10 6 3.9254 -0.2484 -1.2278
11 6 4.6643 -1.0146 -2.3320
12 7 5.5507 -2.0045 -1.7042
13 6 6.8686 -2.0217 -1.9864
14 8 7.5794 -2.8909 -1.5188
15 6 7.4479 -0.9880 -2.8608
16 6 8.7764 -0.8645 -3.0795
17 16 9.0406 0.4462 -4.1446
18 6 7.3634 0.7541 -4.2358
19 6 6.7359 1.8540 -5.0527
20 9 6.6350 3.0128 -4.2753
21 9 7.5303 2.1129 -6.1748
22 9 5.4596 1.4575 -5.4664
23 7 6.7101 -0.0843 -3.5110
24 6 4.9735 -2.9792 -0.7679
25 6 4.2357 -2.2094 0.3406
26 1 -0.4850 0.8400 -0.0004
27 1 4.6257 0.3999 -0.7011
28 1 3.1288 0.3509 -1.6686
29 1 5.2559 -0.3190 -2.9270
30 1 3.9420 -1.5234 -2.9704
31 1 9.5447 -1.4916 -2.6519
32 1 4.2727 -3.6246 -1.2976
33 1 5.7696 -3.5812 -0.3296
34 1 4.9580 -1.7007 0.9790
35 1 3.6440 -2.9051 0.9356
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331062336.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:14:00
Heat of formation + Delta-G solvation = -96.764672 kcal
Electronic energy + Delta-G solvation = -27455.175793 eV
Core-core repulsion = 22973.755969 eV
Total energy + Delta-G solvation = -4481.419823 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.066 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-51.38490 -48.92357 -48.85938 -42.17381 -40.22966 -38.70387 -35.73653 -33.61076
-32.89125 -32.29800 -29.16613 -28.90216 -26.72405 -25.10421 -24.73508 -23.29722
-21.94924 -21.19246 -20.05044 -19.78747 -19.33319 -19.10137 -18.55015 -17.46173
-17.44524 -16.86905 -16.64306 -16.06818 -15.94534 -15.74334 -15.61843 -15.44690
-15.37044 -15.27949 -15.01059 -14.99198 -14.83149 -14.67896 -14.22825 -14.12918
-13.93316 -13.57408 -13.32005 -12.90665 -12.68533 -12.33925 -12.11832 -11.93637
-11.64496 -11.42086 -11.19301 -10.89753 -10.49534 -10.38680 -9.94880 -8.85704
-8.20799 -5.61220 -1.01582 -0.34072 0.11293 0.35713 1.08189 1.25382
1.35524 1.44254 1.86573 2.00813 2.20718 2.35816 2.73020 3.03916
3.04947 3.12891 3.26056 3.58681 3.80147 4.07162 4.09250 4.25019
4.28170 4.40324 4.50776 4.58571 4.73478 4.88430 5.05055 5.15951
5.47088 5.81895 5.83481 6.08071 6.29033 6.83027 6.88352 7.52381
7.95444 8.98703
Molecular weight = 335.07amu
Principal moments of inertia in cm(-1)
A = 0.012677 B = 0.004981 C = 0.003837
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2208.111445 B = 5620.256948 C = 7296.138076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.027 4.027
3 Si 0.946 3.054
4 H -0.271 1.271
5 H -0.307 1.307
6 H -0.266 1.266
7 C -0.252 4.252
8 H 0.056 0.944
9 N -0.621 5.621
10 C 0.113 3.887
11 C 0.048 3.952
12 N -0.585 5.585
13 C 0.587 3.413
14 O -0.563 6.563
15 C -0.012 4.012
16 C -0.196 4.196
17 S 0.455 5.545
18 C -0.140 4.140
19 C 0.557 3.443
20 F -0.164 7.164
21 F -0.152 7.152
22 F -0.166 7.166
23 N -0.409 5.409
24 C 0.101 3.899
25 C 0.135 3.865
26 H 0.263 0.737
27 H 0.028 0.972
28 H 0.061 0.939
29 H 0.170 0.830
30 H 0.056 0.944
31 H 0.226 0.774
32 H 0.069 0.931
33 H 0.102 0.898
34 H 0.032 0.968
35 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.756 3.603 -13.028 28.206
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.601 5.601
2 C -0.223 4.223
3 Si 0.775 3.225
4 H -0.198 1.198
5 H -0.235 1.235
6 H -0.191 1.191
7 C -0.381 4.381
8 H 0.074 0.926
9 N -0.346 5.346
10 C -0.012 4.012
11 C -0.076 4.076
12 N -0.314 5.314
13 C 0.373 3.627
14 O -0.444 6.444
15 C -0.148 4.148
16 C -0.339 4.339
17 S 0.711 5.289
18 C -0.415 4.415
19 C 0.499 3.501
20 F -0.145 7.145
21 F -0.133 7.133
22 F -0.147 7.147
23 N -0.126 5.126
24 C -0.023 4.023
25 C 0.009 3.991
26 H 0.072 0.928
27 H 0.046 0.954
28 H 0.080 0.920
29 H 0.185 0.815
30 H 0.075 0.925
31 H 0.243 0.757
32 H 0.088 0.912
33 H 0.120 0.880
34 H 0.050 0.950
35 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 25.238 3.786 -13.237 28.749
hybrid contribution -1.448 0.144 0.841 1.681
sum 23.790 3.930 -12.397 27.112
Atomic orbital electron populations
1.69892 1.07216 1.27313 1.55703 1.25972 0.95867 1.00889 0.99530
0.85934 0.78377 0.80292 0.77875 1.19776 1.23541 1.19077 1.18859
0.83603 0.93119 1.42566 0.92618 1.44442 1.04583 1.37109 1.48496
1.21727 0.95968 0.92376 0.91147 1.23781 0.94740 0.93193 0.95889
1.47942 1.07037 1.32968 1.43480 1.17338 0.81614 0.83591 0.80163
1.90762 1.60352 1.38047 1.55193 1.20194 0.91105 0.99153 1.04318
1.27417 1.00082 1.04200 1.02228 1.82494 0.97629 1.16965 1.31842
1.27293 1.01237 1.04546 1.08375 1.16866 0.76327 0.79540 0.77364
1.93286 1.95943 1.50491 1.74805 1.93275 1.73335 1.94332 1.52360
1.93278 1.40323 1.90595 1.90493 1.66176 1.36644 1.03256 1.06542
1.22277 0.97924 0.90907 0.91156 1.21520 0.92499 0.91668 0.93407
0.92760 0.95405 0.92049 0.81474 0.92549 0.75745 0.91238 0.87987
0.94985 0.90187
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -60.48 13.97 21.65 0.30 -60.18 16
2 C -0.03 -1.61 5.32 84.86 0.45 -1.16 16
3 Si 0.95 47.63 24.31 68.60 1.67 49.30 16
4 H -0.27 -12.91 6.64 99.48 0.66 -12.25 16
5 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16
6 H -0.27 -13.03 6.39 99.48 0.64 -12.40 16
7 C -0.25 -14.49 10.04 84.03 0.84 -13.65 16
8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16
9 N -0.62 -30.22 2.70 -697.32 -1.88 -32.10 16
10 C 0.11 5.06 4.31 86.42 0.37 5.44 16
11 C 0.05 1.82 6.45 86.42 0.56 2.38 16
12 N -0.58 -20.81 2.94 -821.18 -2.42 -23.22 16
13 C 0.59 18.88 7.67 86.62 0.66 19.55 16
14 O -0.56 -19.44 16.15 -4.12 -0.07 -19.51 16
15 C -0.01 -0.30 6.56 40.56 0.27 -0.03 16
16 C -0.20 -2.99 10.62 67.12 0.71 -2.28 16
17 S 0.45 4.32 22.57 -56.49 -1.27 3.04 16
18 C -0.14 -2.66 6.71 88.57 0.59 -2.06 16
19 C 0.56 10.72 3.55 71.23 0.25 10.98 16
20 F -0.16 -3.40 17.30 44.97 0.78 -2.62 16
21 F -0.15 -2.23 16.98 44.97 0.76 -1.47 16
22 F -0.17 -4.00 17.21 44.97 0.77 -3.23 16
23 N -0.41 -10.48 6.50 -180.84 -1.18 -11.66 16
24 C 0.10 3.55 6.62 86.56 0.57 4.12 16
25 C 0.13 5.42 6.69 86.56 0.58 6.00 16
26 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16
27 H 0.03 1.25 6.93 -2.39 -0.02 1.23 16
28 H 0.06 2.97 4.52 -2.39 -0.01 2.96 16
29 H 0.17 5.78 3.42 -89.69 -0.31 5.48 16
30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
31 H 0.23 2.37 8.04 -2.91 -0.02 2.35 16
32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16
33 H 0.10 3.28 7.01 -2.38 -0.02 3.26 16
34 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16
35 H 0.08 3.13 7.93 -2.39 -0.02 3.11 16
Total: -1.00 -73.19 313.95 4.09 -69.09
By element:
Atomic # 1 Polarization: 2.52 SS G_CDS: 0.76 Total: 3.27 kcal
Atomic # 6 Polarization: 23.41 SS G_CDS: 5.87 Total: 29.28 kcal
Atomic # 7 Polarization: -121.99 SS G_CDS: -5.17 Total: -127.17 kcal
Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.51 kcal
Atomic # 9 Polarization: -9.63 SS G_CDS: 2.32 Total: -7.32 kcal
Atomic # 14 Polarization: 47.63 SS G_CDS: 1.67 Total: 49.30 kcal
Atomic # 16 Polarization: 4.32 SS G_CDS: -1.27 Total: 3.04 kcal
Total: -73.19 4.09 -69.09 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331062336.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.673 kcal
(2) G-P(sol) polarization free energy of solvation -73.185 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds