Wall clock time and date at job start Tue Mar 31 2020 18:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00288 * 2 1 4 4 O 1.20832 * 119.99416 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99964 * 179.97438 * 3 2 1 6 6 H 1.08997 * 108.56987 * 333.85990 * 5 3 2 7 7 C 1.54550 * 108.59259 * 92.13881 * 5 3 2 8 8 S 1.84211 * 101.23514 * 144.35895 * 7 5 3 9 9 C 1.84078 * 93.91044 * 327.52750 * 8 7 5 10 10 N 1.45508 * 108.75406 * 215.67975 * 5 3 2 11 11 S 1.65603 * 122.42441 * 60.10685 * 10 5 3 12 12 O 1.42094 * 104.27805 * 17.38229 * 11 10 5 13 13 O 1.42101 * 104.27423 * 145.23605 * 11 10 5 14 14 C 1.81400 * 104.45038 * 261.30515 * 11 10 5 15 15 C 1.53001 * 109.47021 * 188.21613 * 14 11 10 16 16 C 1.50699 * 115.54847 * 65.61593 * 15 14 11 17 17 H 1.08004 * 119.99998 * 265.39592 * 16 15 14 18 18 C 1.37870 * 120.00276 * 85.40031 * 16 15 14 19 19 N 1.31512 * 120.00390 * 176.85810 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 356.86273 * 18 16 15 21 21 H 1.48498 * 109.47056 * 89.35981 * 20 18 16 22 22 H 1.48497 * 109.47114 * 209.36430 * 20 18 16 23 23 H 1.48504 * 109.47092 * 329.36195 * 20 18 16 24 24 C 1.52998 * 117.49958 * 279.94538 * 15 14 11 25 25 C 1.52996 * 117.49928 * 211.28862 * 15 14 11 26 26 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47374 * 299.99811 * 1 2 3 28 28 H 1.09001 * 109.46806 * 60.00184 * 1 2 3 29 29 H 1.09004 * 111.28217 * 26.29836 * 7 5 3 30 30 H 1.08999 * 110.91029 * 262.25806 * 7 5 3 31 31 H 1.09004 * 110.77679 * 275.14451 * 9 8 7 32 32 H 1.09004 * 110.77499 * 151.72266 * 9 8 7 33 33 H 1.08997 * 109.47352 * 308.21605 * 14 11 10 34 34 H 1.09001 * 109.46612 * 68.21933 * 14 11 10 35 35 H 0.96998 * 120.00367 * 179.97438 * 19 18 16 36 36 H 1.09003 * 117.50104 * 0.02562 * 24 15 14 37 37 H 1.09005 * 117.50097 * 145.01970 * 24 15 14 38 38 H 1.09005 * 117.49867 * 214.98401 * 25 15 14 39 39 H 1.09003 * 117.49988 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9613 0.3667 0.4561 7 6 4.0562 1.3548 -1.4631 8 16 5.5054 2.4795 -1.2955 9 6 4.7597 3.4402 0.0863 10 7 3.9747 2.4170 0.8041 11 16 3.5921 2.5556 2.4094 12 8 3.2297 1.2379 2.7983 13 8 4.7182 3.2052 2.9831 14 6 2.1445 3.6484 2.4370 15 6 1.8145 4.0214 3.8837 16 6 2.8500 4.8563 4.5920 17 1 3.6014 4.3797 5.2041 18 6 2.8381 6.2285 4.4586 19 7 3.7028 6.9615 5.1253 20 14 1.5937 7.0466 3.3310 21 1 0.3553 7.3451 4.0942 22 1 2.1637 8.3101 2.7985 23 1 1.2726 6.1347 2.2037 24 6 1.0403 2.9988 4.7178 25 6 0.3459 4.2730 4.2310 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.2957 1.7900 -2.1115 30 1 4.3621 0.3733 -1.8251 31 1 4.1105 4.2277 -0.2965 32 1 5.5346 3.8555 0.7307 33 1 2.3612 4.5531 1.8690 34 1 1.2929 3.1346 1.9909 35 1 3.6947 7.9269 5.0312 36 1 0.7664 2.0601 4.2361 37 1 1.2797 2.9302 5.7791 38 1 0.1286 5.0423 4.9720 39 1 -0.3852 4.1733 3.4287 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331496392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:19 Heat of formation + Delta-G solvation = -100.288878 kcal Electronic energy + Delta-G solvation = -26732.433152 eV Core-core repulsion = 22895.868448 eV Total energy + Delta-G solvation = -3836.564704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.90476 -37.60356 -37.18668 -36.62965 -36.28124 -35.37062 -32.18402 -31.41176 -28.57486 -28.18554 -27.07408 -25.54365 -24.02294 -21.78419 -21.37762 -19.54525 -18.82247 -18.31427 -17.86507 -17.18218 -16.83271 -16.50973 -16.17287 -15.64079 -15.25650 -15.05596 -14.64848 -14.33321 -14.09627 -13.88209 -13.70772 -13.31421 -12.93921 -12.80974 -12.60594 -12.38968 -12.32496 -12.26359 -11.92040 -11.60046 -11.40134 -11.25707 -11.19538 -11.05929 -10.94098 -10.68391 -10.45265 -10.39046 -10.18383 -9.78676 -9.34273 -9.21594 -8.69186 -8.50885 -8.08514 -6.17717 -4.24735 0.56442 1.38238 1.60184 1.90918 2.29419 2.92498 3.20575 3.30942 3.33828 3.82632 4.18616 4.33235 4.36664 4.49477 4.63405 4.71769 4.86642 4.90336 5.00223 5.01087 5.05460 5.07662 5.19769 5.32549 5.34499 5.48192 5.63241 5.89926 5.98354 6.05899 6.07312 6.21785 6.36586 6.58733 6.82452 6.99254 7.40198 7.56343 8.36301 8.89921 9.42811 10.93503 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.005866 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.567003 B = 4772.313066 C = 5671.944867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.441 3.559 4 O -0.489 6.489 5 C 0.160 3.840 6 H 0.128 0.872 7 C -0.063 4.063 8 S -0.244 6.244 9 C 0.164 3.836 10 N -0.996 5.996 11 S 2.600 3.400 12 O -0.962 6.962 13 O -0.912 6.912 14 C -0.563 4.563 15 C -0.001 4.001 16 C -0.503 4.503 17 H 0.090 0.910 18 C 0.089 3.911 19 N -0.882 5.882 20 Si 0.867 3.133 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.256 1.256 24 C -0.184 4.184 25 C -0.179 4.179 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -12.295 -15.114 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.280 3.720 4 O -0.376 6.376 5 C 0.049 3.951 6 H 0.146 0.854 7 C -0.213 4.213 8 S -0.019 6.019 9 C -0.071 4.071 10 N -0.831 5.831 11 S 2.699 3.301 12 O -0.953 6.953 13 O -0.902 6.902 14 C -0.696 4.696 15 C -0.004 4.004 16 C -0.539 4.539 17 H 0.108 0.892 18 C -0.116 4.116 19 N -0.517 5.517 20 Si 0.694 3.306 21 H -0.200 1.200 22 H -0.216 1.216 23 H -0.180 1.180 24 C -0.222 4.222 25 C -0.218 4.218 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.120 0.880 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.448 -12.143 -14.957 19.420 hybrid contribution -2.576 1.061 -0.424 2.818 sum -5.024 -11.082 -15.380 19.611 Atomic orbital electron populations 1.23371 0.75808 1.04078 1.02889 1.86503 1.23788 1.32478 1.83333 1.24307 0.92328 0.82190 0.73171 1.90716 1.66778 1.36109 1.43958 1.20614 0.87253 0.93088 0.94172 0.85408 1.24418 0.98195 1.03857 0.94784 1.88238 1.26301 1.40893 1.46469 1.24128 0.97439 0.91437 0.94107 1.59033 1.67182 1.27431 1.29478 1.05759 0.77850 0.75810 0.70726 1.93527 1.85753 1.36479 1.79506 1.93633 1.47675 1.76919 1.71950 1.30320 1.17783 1.14749 1.06730 1.18944 0.93090 1.00554 0.87829 1.20347 1.12617 0.90795 1.30184 0.89185 1.24920 0.95020 0.97033 0.94621 1.69884 1.35566 1.05911 1.40369 0.87046 0.82019 0.79059 0.82481 1.19952 1.21590 1.17994 1.23066 1.05828 0.92338 1.00941 1.22983 0.95684 1.00077 1.03066 0.87706 0.91389 0.91727 0.87592 0.84809 0.88046 0.84635 0.85322 0.86633 0.92291 0.90210 0.88416 0.88704 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.14 10.56 -39.25 -0.41 -4.55 16 3 C 0.44 5.98 5.91 36.00 0.21 6.20 16 4 O -0.49 -7.58 13.88 -18.75 -0.26 -7.84 16 5 C 0.16 2.01 2.77 -68.80 -0.19 1.82 16 6 H 0.13 1.49 7.99 -51.93 -0.42 1.07 16 7 C -0.06 -0.57 7.02 37.97 0.27 -0.31 16 8 S -0.24 -2.83 23.43 -107.50 -2.52 -5.35 16 9 C 0.16 2.25 7.68 60.45 0.46 2.72 16 10 N -1.00 -15.46 2.91 -110.15 -0.32 -15.78 16 11 S 2.60 52.16 4.95 -107.50 -0.53 51.63 16 12 O -0.96 -19.91 16.78 -57.54 -0.97 -20.87 16 13 O -0.91 -21.52 16.10 -57.54 -0.93 -22.45 16 14 C -0.56 -11.63 5.04 37.16 0.19 -11.44 16 15 C 0.00 -0.03 0.79 -155.66 -0.12 -0.15 16 16 C -0.50 -13.94 8.20 -34.44 -0.28 -14.22 16 17 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 18 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 19 N -0.88 -26.44 13.96 55.43 0.77 -25.67 16 20 Si 0.87 20.91 25.07 -169.99 -4.26 16.65 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -5.76 5.56 56.52 0.31 -5.45 16 24 C -0.18 -3.82 9.96 -26.70 -0.27 -4.09 16 25 C -0.18 -3.76 7.74 -26.70 -0.21 -3.97 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 29 H 0.11 0.87 7.86 -51.93 -0.41 0.46 16 30 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.14 1.92 7.51 -51.93 -0.39 1.53 16 33 H 0.13 2.63 6.26 -51.93 -0.33 2.30 16 34 H 0.12 2.18 6.14 -51.92 -0.32 1.86 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 38 H 0.09 2.05 7.52 -51.93 -0.39 1.65 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -34.53 343.32 -8.49 -43.03 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.27 Total: 5.69 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 1.03 Total: -19.67 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.45 Total: -41.45 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -2.57 Total: -55.71 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.26 Total: 16.65 kcal Atomic # 16 Polarization: 49.34 SS G_CDS: -3.05 Total: 46.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.53 -8.49 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331496392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.263 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds