Wall clock time and date at job start Tue Mar 31 2020 18:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00288 * 2 1 4 4 O 1.20832 * 119.99416 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99964 * 179.97438 * 3 2 1 6 6 H 1.08997 * 108.56987 * 333.85990 * 5 3 2 7 7 C 1.54550 * 108.59259 * 92.13881 * 5 3 2 8 8 S 1.84211 * 101.23514 * 144.35895 * 7 5 3 9 9 C 1.84078 * 93.91044 * 327.52750 * 8 7 5 10 10 N 1.45508 * 108.75406 * 215.67975 * 5 3 2 11 11 S 1.65603 * 122.42441 * 60.10685 * 10 5 3 12 12 O 1.42094 * 104.27805 * 17.38229 * 11 10 5 13 13 O 1.42101 * 104.27423 * 145.23605 * 11 10 5 14 14 C 1.81400 * 104.45038 * 261.30515 * 11 10 5 15 15 C 1.53001 * 109.47021 * 188.21613 * 14 11 10 16 16 C 1.50699 * 115.54847 * 65.61593 * 15 14 11 17 17 H 1.08004 * 119.99998 * 265.39592 * 16 15 14 18 18 C 1.37870 * 120.00276 * 85.40031 * 16 15 14 19 19 N 1.31512 * 120.00390 * 176.85810 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 356.86273 * 18 16 15 21 21 H 1.48498 * 109.47056 * 89.35981 * 20 18 16 22 22 H 1.48497 * 109.47114 * 209.36430 * 20 18 16 23 23 H 1.48504 * 109.47092 * 329.36195 * 20 18 16 24 24 C 1.52998 * 117.49958 * 279.94538 * 15 14 11 25 25 C 1.52996 * 117.49928 * 211.28862 * 15 14 11 26 26 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47374 * 299.99811 * 1 2 3 28 28 H 1.09001 * 109.46806 * 60.00184 * 1 2 3 29 29 H 1.09004 * 111.28217 * 26.29836 * 7 5 3 30 30 H 1.08999 * 110.91029 * 262.25806 * 7 5 3 31 31 H 1.09004 * 110.77679 * 275.14451 * 9 8 7 32 32 H 1.09004 * 110.77499 * 151.72266 * 9 8 7 33 33 H 1.08997 * 109.47352 * 308.21605 * 14 11 10 34 34 H 1.09001 * 109.46612 * 68.21933 * 14 11 10 35 35 H 0.96998 * 120.00367 * 179.97438 * 19 18 16 36 36 H 1.09003 * 117.50104 * 0.02562 * 24 15 14 37 37 H 1.09005 * 117.50097 * 145.01970 * 24 15 14 38 38 H 1.09005 * 117.49867 * 214.98401 * 25 15 14 39 39 H 1.09003 * 117.49988 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9613 0.3667 0.4561 7 6 4.0562 1.3548 -1.4631 8 16 5.5054 2.4795 -1.2955 9 6 4.7597 3.4402 0.0863 10 7 3.9747 2.4170 0.8041 11 16 3.5921 2.5556 2.4094 12 8 3.2297 1.2379 2.7983 13 8 4.7182 3.2052 2.9831 14 6 2.1445 3.6484 2.4370 15 6 1.8145 4.0214 3.8837 16 6 2.8500 4.8563 4.5920 17 1 3.6014 4.3797 5.2041 18 6 2.8381 6.2285 4.4586 19 7 3.7028 6.9615 5.1253 20 14 1.5937 7.0466 3.3310 21 1 0.3553 7.3451 4.0942 22 1 2.1637 8.3101 2.7985 23 1 1.2726 6.1347 2.2037 24 6 1.0403 2.9988 4.7178 25 6 0.3459 4.2730 4.2310 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.2957 1.7900 -2.1115 30 1 4.3621 0.3733 -1.8251 31 1 4.1105 4.2277 -0.2965 32 1 5.5346 3.8555 0.7307 33 1 2.3612 4.5531 1.8690 34 1 1.2929 3.1346 1.9909 35 1 3.6947 7.9269 5.0312 36 1 0.7664 2.0601 4.2361 37 1 1.2797 2.9302 5.7791 38 1 0.1286 5.0423 4.9720 39 1 -0.3852 4.1733 3.4287 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331496392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:18 Heat of formation + Delta-G solvation = -125.797793 kcal Electronic energy + Delta-G solvation = -26733.539302 eV Core-core repulsion = 22895.868448 eV Total energy + Delta-G solvation = -3837.670854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88366 -38.95601 -38.59955 -38.26406 -37.34618 -37.01446 -34.31643 -32.38299 -30.22581 -28.96263 -28.08341 -27.61579 -24.98133 -23.44982 -22.45753 -21.26273 -20.21925 -19.32787 -19.25355 -18.65077 -18.27509 -17.58843 -17.20955 -17.07588 -16.90829 -16.59082 -15.99569 -15.67544 -15.28232 -15.05587 -14.90018 -14.69254 -14.57418 -14.18569 -13.97351 -13.69096 -13.41783 -13.31520 -13.16717 -13.11792 -12.98466 -12.94590 -12.74216 -12.51819 -12.27998 -12.15890 -11.90304 -11.84072 -11.71224 -11.34510 -11.06186 -10.77771 -10.64131 -10.20005 -8.97768 -8.32971 -6.45152 -0.96575 0.49950 0.63313 0.91815 1.28971 1.31666 1.34088 1.45989 1.70360 2.31946 2.63775 2.84916 2.96561 3.01844 3.17134 3.49112 3.62008 3.74673 3.85413 3.99713 4.07461 4.20504 4.25647 4.28787 4.30923 4.34116 4.36608 4.41192 4.54705 4.71935 4.74704 4.85784 4.94963 5.10038 5.17578 5.34923 5.56675 6.20155 6.44235 6.66425 7.26019 8.82870 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.005866 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.567003 B = 4772.313066 C = 5671.944867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.442 3.558 4 O -0.512 6.512 5 C 0.146 3.854 6 H 0.137 0.863 7 C -0.047 4.047 8 S -0.242 6.242 9 C 0.150 3.850 10 N -0.994 5.994 11 S 2.614 3.386 12 O -0.974 6.974 13 O -0.962 6.962 14 C -0.559 4.559 15 C -0.034 4.034 16 C -0.503 4.503 17 H 0.037 0.963 18 C 0.032 3.968 19 N -0.937 5.937 20 Si 0.924 3.076 21 H -0.261 1.261 22 H -0.290 1.290 23 H -0.226 1.226 24 C -0.177 4.177 25 C -0.165 4.165 26 H 0.137 0.863 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.172 0.828 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.269 0.731 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 -13.870 -18.243 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.261 6.261 3 C 0.282 3.718 4 O -0.401 6.401 5 C 0.036 3.964 6 H 0.155 0.845 7 C -0.197 4.197 8 S -0.016 6.016 9 C -0.085 4.085 10 N -0.832 5.832 11 S 2.712 3.288 12 O -0.964 6.964 13 O -0.952 6.952 14 C -0.692 4.692 15 C -0.037 4.037 16 C -0.540 4.540 17 H 0.055 0.945 18 C -0.168 4.168 19 N -0.575 5.575 20 Si 0.747 3.253 21 H -0.186 1.186 22 H -0.217 1.217 23 H -0.149 1.149 24 C -0.215 4.215 25 C -0.204 4.204 26 H 0.155 0.845 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.190 0.810 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.881 -13.762 -18.085 23.244 hybrid contribution -1.778 1.391 0.550 2.323 sum -6.659 -12.371 -17.536 22.470 Atomic orbital electron populations 1.23706 0.74174 1.06293 1.02927 1.86500 1.25388 1.31496 1.82760 1.24375 0.92501 0.82350 0.72604 1.90694 1.67259 1.36843 1.45265 1.20968 0.87318 0.92069 0.96010 0.84496 1.24632 0.97152 1.05238 0.92640 1.88269 1.27578 1.41243 1.44528 1.24278 0.97483 0.91995 0.94761 1.58587 1.67231 1.28831 1.28570 1.04990 0.77085 0.75129 0.71572 1.93493 1.85737 1.36583 1.80629 1.93581 1.49564 1.77783 1.74272 1.30181 1.18974 1.15281 1.04791 1.18855 0.93361 1.02193 0.89279 1.20376 1.12575 0.91453 1.29637 0.94526 1.25800 0.97136 0.97641 0.96203 1.70040 1.38254 1.06311 1.42854 0.86113 0.79585 0.78250 0.81329 1.18577 1.21682 1.14915 1.23149 1.04431 0.93354 1.00525 1.23062 0.94318 0.99571 1.03457 0.84530 0.92453 0.90617 0.85950 0.81021 0.86562 0.86177 0.85209 0.84236 0.92197 0.87585 0.89154 0.89546 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.56 113.37 1.20 1.52 16 2 O -0.35 -7.15 10.56 -51.40 -0.54 -7.69 16 3 C 0.44 10.67 5.91 71.23 0.42 11.09 16 4 O -0.51 -14.32 13.88 21.95 0.30 -14.01 16 5 C 0.15 3.31 2.77 44.96 0.12 3.43 16 6 H 0.14 2.84 7.99 -2.39 -0.02 2.82 16 7 C -0.05 -0.69 7.02 72.51 0.51 -0.18 16 8 S -0.24 -5.07 23.43 -56.49 -1.32 -6.40 16 9 C 0.15 4.00 7.68 127.56 0.98 4.98 16 10 N -0.99 -29.73 2.91 -502.42 -1.46 -31.19 16 11 S 2.61 104.86 4.95 -56.49 -0.28 104.58 16 12 O -0.97 -39.72 16.78 -127.65 -2.14 -41.87 16 13 O -0.96 -47.56 16.10 -127.65 -2.05 -49.61 16 14 C -0.56 -22.28 5.04 71.98 0.36 -21.92 16 15 C -0.03 -1.56 0.79 -52.93 -0.04 -1.61 16 16 C -0.50 -28.93 8.20 25.60 0.21 -28.72 16 17 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 18 C 0.03 1.83 5.47 84.65 0.46 2.30 16 19 N -0.94 -58.74 13.96 21.44 0.30 -58.44 16 20 Si 0.92 42.65 25.07 68.60 1.72 44.37 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.23 -9.29 5.56 99.48 0.55 -8.74 16 24 C -0.18 -7.10 9.96 30.61 0.30 -6.80 16 25 C -0.17 -6.52 7.74 30.61 0.24 -6.28 16 26 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.08 0.97 8.13 -2.39 -0.02 0.95 16 29 H 0.12 1.47 7.86 -2.38 -0.02 1.45 16 30 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.12 3.53 7.51 -2.39 -0.02 3.52 16 33 H 0.13 5.09 6.26 -2.39 -0.01 5.08 16 34 H 0.14 4.85 6.14 -2.39 -0.01 4.84 16 35 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.09 3.70 8.14 -2.38 -0.02 3.68 16 38 H 0.09 3.55 7.52 -2.38 -0.02 3.53 16 39 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 Total: -1.00 -78.43 343.32 0.20 -78.23 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.91 Total: 24.22 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.77 Total: -42.18 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.16 Total: -89.63 kcal Atomic # 8 Polarization: -108.75 SS G_CDS: -4.43 Total: -113.19 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.72 Total: 44.37 kcal Atomic # 16 Polarization: 99.79 SS G_CDS: -1.60 Total: 98.18 kcal Total: -78.43 0.20 -78.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331496392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.568 kcal (2) G-P(sol) polarization free energy of solvation -78.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds