Wall clock time and date at job start Tue Mar 31 2020 18:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99958 * 2 1 4 4 O 1.20830 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00058 * 180.02562 * 3 2 1 6 6 H 1.09001 * 108.56458 * 61.82722 * 5 3 2 7 7 C 1.54574 * 108.91631 * 303.73823 * 5 3 2 8 8 S 1.84207 * 101.41558 * 216.23203 * 7 5 3 9 9 C 1.84065 * 93.91446 * 32.04290 * 8 7 5 10 10 N 1.45501 * 108.75302 * 180.02562 * 5 3 2 11 11 S 1.65601 * 122.42802 * 299.88711 * 10 5 3 12 12 O 1.42106 * 104.27913 * 153.66775 * 11 10 5 13 13 O 1.42106 * 104.27989 * 25.81704 * 11 10 5 14 14 C 1.81401 * 104.45299 * 269.74217 * 11 10 5 15 15 C 1.53000 * 109.46934 * 186.13155 * 14 11 10 16 16 C 1.50693 * 115.55332 * 294.73290 * 15 14 11 17 17 H 1.08002 * 120.00139 * 99.53851 * 16 15 14 18 18 C 1.37878 * 120.00147 * 279.54354 * 16 15 14 19 19 N 1.31511 * 120.00188 * 5.77977 * 18 16 15 20 20 Si 1.86801 * 120.00199 * 185.78998 * 18 16 15 21 21 H 1.48500 * 109.47087 * 269.99575 * 20 18 16 22 22 H 1.48493 * 109.47472 * 149.99275 * 20 18 16 23 23 H 1.48509 * 109.47037 * 29.99075 * 20 18 16 24 24 C 1.53002 * 117.51750 * 80.43930 * 15 14 11 25 25 C 1.53004 * 117.49276 * 149.06643 * 15 14 11 26 26 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47035 * 299.99422 * 1 2 3 28 28 H 1.09001 * 109.47496 * 59.99333 * 1 2 3 29 29 H 1.08992 * 111.19418 * 98.10738 * 7 5 3 30 30 H 1.09005 * 110.85396 * 334.21170 * 7 5 3 31 31 H 1.08993 * 110.78000 * 208.27553 * 9 8 7 32 32 H 1.09007 * 110.77774 * 84.84703 * 9 8 7 33 33 H 1.09001 * 109.46794 * 66.13224 * 14 11 10 34 34 H 1.09003 * 109.46941 * 306.12959 * 14 11 10 35 35 H 0.97004 * 119.99692 * 354.99820 * 19 18 16 36 36 H 1.09003 * 117.49568 * 214.96793 * 24 15 14 37 37 H 1.09002 * 117.50027 * 359.97438 * 24 15 14 38 38 H 1.08993 * 117.50336 * 359.97339 * 25 15 14 39 39 H 1.09007 * 117.49275 * 144.99893 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9381 0.8061 -0.9117 7 6 4.1098 0.4898 1.2150 8 16 5.5538 1.5249 1.7016 9 6 4.7678 3.0991 1.1610 10 7 3.9613 2.6752 0.0002 11 16 3.5316 3.7198 -1.2109 12 8 3.5315 4.9972 -0.5883 13 8 2.3371 3.1651 -1.7448 14 6 4.8833 3.5983 -2.4145 15 6 4.6778 4.6373 -3.5187 16 6 3.4606 4.4346 -4.3836 17 1 2.5634 5.0057 -4.1957 18 6 3.4921 3.5198 -5.4147 19 7 4.5419 2.7437 -5.5734 20 14 2.0438 3.3829 -6.5865 21 1 1.0758 2.3860 -6.0628 22 1 2.5268 2.9495 -7.9221 23 1 1.3772 4.7046 -6.7061 24 6 5.1021 6.0771 -3.2223 25 6 5.9276 5.2187 -4.1829 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 4.4259 -0.5127 0.9273 30 1 3.3693 0.4503 2.0140 31 1 5.5232 3.8259 0.8626 32 1 4.1303 3.5031 1.9476 33 1 4.8916 2.6000 -2.8519 34 1 5.8335 3.7836 -1.9135 35 1 5.3232 2.8638 -5.0112 36 1 4.5006 6.8777 -3.6530 37 1 5.5273 6.2846 -2.2404 38 1 6.8960 4.8614 -3.8330 39 1 5.8691 5.4546 -5.2455 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331496395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:22 Heat of formation + Delta-G solvation = -107.551997 kcal Electronic energy + Delta-G solvation = -26555.198521 eV Core-core repulsion = 22718.318865 eV Total energy + Delta-G solvation = -3836.879656 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56146 -37.45545 -37.12261 -36.51199 -35.93032 -35.15539 -32.05619 -31.37901 -28.39334 -27.81500 -27.07162 -25.02848 -23.89149 -21.46282 -21.20677 -19.87455 -18.91822 -17.92786 -17.66438 -17.17173 -16.82139 -16.40858 -15.99712 -15.56079 -15.32210 -14.64692 -14.35175 -14.11368 -13.86015 -13.77831 -13.50853 -13.21493 -13.15231 -12.67559 -12.54430 -12.34484 -12.07380 -11.89357 -11.66628 -11.43329 -11.32692 -11.23179 -10.97250 -10.81524 -10.74385 -10.57241 -10.35235 -10.15991 -10.13141 -9.77243 -9.35402 -8.72320 -8.56969 -8.36521 -8.11949 -6.50077 -4.29171 0.66302 1.39939 1.72872 2.28591 2.50557 3.03118 3.42818 3.44854 3.60836 3.90005 4.40094 4.44366 4.52517 4.60830 4.76758 4.85988 4.91474 4.99997 5.12092 5.12927 5.16905 5.19858 5.24552 5.30736 5.49022 5.56339 5.68280 5.99400 6.09363 6.16019 6.28813 6.40596 6.48975 6.70124 6.95478 7.11935 7.81044 7.98353 8.30041 8.72084 9.49331 10.89302 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.005744 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.811434 B = 4873.059440 C = 6134.607498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.438 3.562 4 O -0.454 6.454 5 C 0.158 3.842 6 H 0.126 0.874 7 C -0.055 4.055 8 S -0.262 6.262 9 C 0.175 3.825 10 N -0.997 5.997 11 S 2.614 3.386 12 O -0.956 6.956 13 O -0.913 6.913 14 C -0.566 4.566 15 C 0.020 3.980 16 C -0.588 4.588 17 H 0.062 0.938 18 C 0.039 3.961 19 N -0.898 5.898 20 Si 1.066 2.934 21 H -0.283 1.283 22 H -0.283 1.283 23 H -0.285 1.285 24 C -0.191 4.191 25 C -0.163 4.163 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -6.916 13.666 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.275 3.725 4 O -0.337 6.337 5 C 0.047 3.953 6 H 0.144 0.856 7 C -0.205 4.205 8 S -0.037 6.037 9 C -0.061 4.061 10 N -0.832 5.832 11 S 2.711 3.289 12 O -0.947 6.947 13 O -0.903 6.903 14 C -0.699 4.699 15 C 0.018 3.982 16 C -0.625 4.625 17 H 0.080 0.920 18 C -0.168 4.168 19 N -0.531 5.531 20 Si 0.893 3.107 21 H -0.209 1.209 22 H -0.208 1.208 23 H -0.211 1.211 24 C -0.229 4.229 25 C -0.203 4.203 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.322 -7.191 12.891 14.765 hybrid contribution 0.052 0.904 0.622 1.098 sum -0.270 -6.287 13.513 14.907 Atomic orbital electron populations 1.23270 0.76078 1.03428 1.02924 1.86413 1.23610 1.32782 1.84800 1.23759 0.91781 0.82260 0.74749 1.90755 1.66137 1.35807 1.40962 1.20541 0.88323 0.83753 1.02661 0.85628 1.24430 0.96964 1.01411 0.97677 1.88232 1.26100 1.05454 1.83931 1.23921 0.95932 0.95674 0.90530 1.59090 1.67564 1.19563 1.36982 1.05452 0.76885 0.73044 0.73521 1.93505 1.87418 1.38904 1.74841 1.93621 1.41096 1.77305 1.78269 1.30183 1.15879 1.10338 1.13474 1.18568 0.96832 0.88117 0.94705 1.21412 0.97137 1.27666 1.16327 0.91974 1.25811 1.02277 0.91563 0.97128 1.70745 1.05385 1.35253 1.41755 0.83597 0.74721 0.76486 0.75907 1.20901 1.20843 1.21070 1.23048 1.04897 0.95596 0.99340 1.22827 0.94290 1.04934 0.98227 0.88160 0.92147 0.91304 0.84683 0.87633 0.86277 0.88160 0.85377 0.87976 0.91403 0.89170 0.90437 0.91085 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -4.83 10.41 -39.25 -0.41 -5.24 16 3 C 0.44 7.05 6.35 36.01 0.23 7.28 16 4 O -0.45 -9.10 12.94 -26.95 -0.35 -9.44 16 5 C 0.16 2.16 3.17 -68.79 -0.22 1.94 16 6 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 7 C -0.06 -0.53 6.93 37.98 0.26 -0.27 16 8 S -0.26 -2.90 23.44 -107.50 -2.52 -5.42 16 9 C 0.18 2.23 7.29 60.43 0.44 2.67 16 10 N -1.00 -15.65 2.95 -110.17 -0.32 -15.98 16 11 S 2.61 54.20 4.89 -107.50 -0.53 53.67 16 12 O -0.96 -21.33 17.42 -57.54 -1.00 -22.33 16 13 O -0.91 -22.25 13.55 -67.36 -0.91 -23.16 16 14 C -0.57 -11.69 5.89 37.16 0.22 -11.47 16 15 C 0.02 0.49 0.85 -155.66 -0.13 0.36 16 16 C -0.59 -16.20 8.17 -34.44 -0.28 -16.48 16 17 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 18 C 0.04 1.09 5.42 -17.82 -0.10 0.99 16 19 N -0.90 -25.38 13.61 55.43 0.75 -24.62 16 20 Si 1.07 25.24 29.91 -169.99 -5.08 20.16 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.19 -4.15 9.96 -26.73 -0.27 -4.42 16 25 C -0.16 -3.59 9.00 -26.73 -0.24 -3.83 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 0.91 7.84 -51.93 -0.41 0.50 16 31 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.13 2.71 7.60 -51.92 -0.39 2.32 16 34 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 35 H 0.27 7.56 6.07 -40.82 -0.25 7.31 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -35.39 350.98 -9.42 -44.82 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.33 Total: 4.02 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 0.98 Total: -21.76 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.43 Total: -40.60 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -2.67 Total: -60.18 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -3.05 Total: 48.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.39 -9.42 -44.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331496395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.733 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds