Wall clock time and date at job start Tue Mar 31 2020 18:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99958 * 2 1 4 4 O 1.20830 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00058 * 180.02562 * 3 2 1 6 6 H 1.09001 * 108.56458 * 61.82722 * 5 3 2 7 7 C 1.54574 * 108.91631 * 303.73823 * 5 3 2 8 8 S 1.84207 * 101.41558 * 216.23203 * 7 5 3 9 9 C 1.84065 * 93.91446 * 32.04290 * 8 7 5 10 10 N 1.45501 * 108.75302 * 180.02562 * 5 3 2 11 11 S 1.65601 * 122.42802 * 299.88711 * 10 5 3 12 12 O 1.42106 * 104.27913 * 153.66775 * 11 10 5 13 13 O 1.42106 * 104.27989 * 25.81704 * 11 10 5 14 14 C 1.81401 * 104.45299 * 269.74217 * 11 10 5 15 15 C 1.53000 * 109.46934 * 186.13155 * 14 11 10 16 16 C 1.50693 * 115.55332 * 294.73290 * 15 14 11 17 17 H 1.08002 * 120.00139 * 99.53851 * 16 15 14 18 18 C 1.37878 * 120.00147 * 279.54354 * 16 15 14 19 19 N 1.31511 * 120.00188 * 5.77977 * 18 16 15 20 20 Si 1.86801 * 120.00199 * 185.78998 * 18 16 15 21 21 H 1.48500 * 109.47087 * 269.99575 * 20 18 16 22 22 H 1.48493 * 109.47472 * 149.99275 * 20 18 16 23 23 H 1.48509 * 109.47037 * 29.99075 * 20 18 16 24 24 C 1.53002 * 117.51750 * 80.43930 * 15 14 11 25 25 C 1.53004 * 117.49276 * 149.06643 * 15 14 11 26 26 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47035 * 299.99422 * 1 2 3 28 28 H 1.09001 * 109.47496 * 59.99333 * 1 2 3 29 29 H 1.08992 * 111.19418 * 98.10738 * 7 5 3 30 30 H 1.09005 * 110.85396 * 334.21170 * 7 5 3 31 31 H 1.08993 * 110.78000 * 208.27553 * 9 8 7 32 32 H 1.09007 * 110.77774 * 84.84703 * 9 8 7 33 33 H 1.09001 * 109.46794 * 66.13224 * 14 11 10 34 34 H 1.09003 * 109.46941 * 306.12959 * 14 11 10 35 35 H 0.97004 * 119.99692 * 354.99820 * 19 18 16 36 36 H 1.09003 * 117.49568 * 214.96793 * 24 15 14 37 37 H 1.09002 * 117.50027 * 359.97438 * 24 15 14 38 38 H 1.08993 * 117.50336 * 359.97339 * 25 15 14 39 39 H 1.09007 * 117.49275 * 144.99893 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9381 0.8061 -0.9117 7 6 4.1098 0.4898 1.2150 8 16 5.5538 1.5249 1.7016 9 6 4.7678 3.0991 1.1610 10 7 3.9613 2.6752 0.0002 11 16 3.5316 3.7198 -1.2109 12 8 3.5315 4.9972 -0.5883 13 8 2.3371 3.1651 -1.7448 14 6 4.8833 3.5983 -2.4145 15 6 4.6778 4.6373 -3.5187 16 6 3.4606 4.4346 -4.3836 17 1 2.5634 5.0057 -4.1957 18 6 3.4921 3.5198 -5.4147 19 7 4.5419 2.7437 -5.5734 20 14 2.0438 3.3829 -6.5865 21 1 1.0758 2.3860 -6.0628 22 1 2.5268 2.9495 -7.9221 23 1 1.3772 4.7046 -6.7061 24 6 5.1021 6.0771 -3.2223 25 6 5.9276 5.2187 -4.1829 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 4.4259 -0.5127 0.9273 30 1 3.3693 0.4503 2.0140 31 1 5.5232 3.8259 0.8626 32 1 4.1303 3.5031 1.9476 33 1 4.8916 2.6000 -2.8519 34 1 5.8335 3.7836 -1.9135 35 1 5.3232 2.8638 -5.0112 36 1 4.5006 6.8777 -3.6530 37 1 5.5273 6.2846 -2.2404 38 1 6.8960 4.8614 -3.8330 39 1 5.8691 5.4546 -5.2455 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331496395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:22 Heat of formation + Delta-G solvation = -131.546957 kcal Electronic energy + Delta-G solvation = -26556.239021 eV Core-core repulsion = 22718.318865 eV Total energy + Delta-G solvation = -3837.920156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74943 -38.95548 -38.53551 -38.14968 -37.21627 -36.84097 -34.10686 -32.39389 -30.05373 -28.76153 -28.09931 -27.08538 -24.95085 -23.19982 -22.43732 -21.67250 -20.25542 -19.27124 -19.02854 -18.74475 -18.22744 -17.57777 -17.27803 -16.91650 -16.67441 -15.99603 -15.89131 -15.69745 -15.21093 -15.10677 -14.93923 -14.60986 -14.46972 -14.24851 -13.77301 -13.58203 -13.23574 -13.17629 -13.10568 -13.02595 -12.96935 -12.80433 -12.72446 -12.46547 -12.25620 -12.05609 -11.97606 -11.73414 -11.51894 -11.25094 -10.65606 -10.61720 -10.58517 -10.14849 -8.95652 -8.64455 -6.42720 -0.89058 0.52678 0.81498 1.10347 1.36171 1.48971 1.55013 1.73522 1.74562 2.49590 2.82825 2.92270 3.07638 3.15543 3.26488 3.55691 3.61482 3.74773 3.85535 4.00416 4.11223 4.24858 4.28531 4.29619 4.33112 4.35447 4.40855 4.46136 4.57243 4.68107 4.78455 4.91524 4.99128 5.19647 5.28483 5.37803 5.97995 6.12163 6.61743 6.63058 7.38662 8.77014 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.005744 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.811434 B = 4873.059440 C = 6134.607498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.435 3.565 4 O -0.502 6.502 5 C 0.148 3.852 6 H 0.138 0.862 7 C -0.044 4.044 8 S -0.243 6.243 9 C 0.159 3.841 10 N -0.995 5.995 11 S 2.627 3.373 12 O -0.981 6.981 13 O -0.959 6.959 14 C -0.560 4.560 15 C -0.016 4.016 16 C -0.602 4.602 17 H 0.036 0.964 18 C 0.001 3.999 19 N -0.914 5.914 20 Si 1.093 2.907 21 H -0.281 1.281 22 H -0.271 1.271 23 H -0.277 1.277 24 C -0.184 4.184 25 C -0.153 4.153 26 H 0.142 0.858 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.170 0.830 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.272 0.728 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -8.432 15.036 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.273 3.727 4 O -0.388 6.388 5 C 0.037 3.963 6 H 0.155 0.845 7 C -0.194 4.194 8 S -0.018 6.018 9 C -0.076 4.076 10 N -0.832 5.832 11 S 2.725 3.275 12 O -0.971 6.971 13 O -0.949 6.949 14 C -0.692 4.692 15 C -0.018 4.018 16 C -0.640 4.640 17 H 0.054 0.946 18 C -0.202 4.202 19 N -0.549 5.549 20 Si 0.916 3.084 21 H -0.207 1.207 22 H -0.196 1.196 23 H -0.202 1.202 24 C -0.221 4.221 25 C -0.192 4.192 26 H 0.160 0.840 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.187 0.813 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.046 -8.714 14.270 16.753 hybrid contribution -0.383 1.335 0.286 1.417 sum 0.663 -7.379 14.556 16.333 Atomic orbital electron populations 1.23557 0.74870 1.05903 1.02087 1.86416 1.24799 1.31391 1.84092 1.24338 0.92835 0.82188 0.73299 1.90739 1.67316 1.37392 1.43404 1.20917 0.86975 0.83074 1.05291 0.84494 1.24594 0.96651 1.01927 0.96197 1.88220 1.26066 1.04016 1.83485 1.24196 0.96270 0.97482 0.89627 1.58586 1.67900 1.20110 1.36604 1.04672 0.76289 0.72785 0.73724 1.93459 1.87724 1.40639 1.75291 1.93566 1.43669 1.78079 1.79610 1.30019 1.17779 1.08731 1.12667 1.18662 0.96663 0.90339 0.96127 1.21570 0.97782 1.27285 1.17321 0.94616 1.26764 1.03715 0.91448 0.98293 1.70811 1.05761 1.35962 1.42345 0.83253 0.72991 0.76964 0.75194 1.20666 1.19561 1.20186 1.23118 1.04282 0.94210 1.00496 1.22806 0.94863 1.04201 0.97368 0.83975 0.91589 0.93653 0.81269 0.86235 0.85060 0.87656 0.86097 0.84128 0.91671 0.89985 0.87841 0.88147 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.35 -8.99 10.41 -51.40 -0.54 -9.52 16 3 C 0.43 13.78 6.35 71.24 0.45 14.23 16 4 O -0.50 -20.60 12.94 29.79 0.39 -20.22 16 5 C 0.15 3.79 3.17 44.97 0.14 3.93 16 6 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 7 C -0.04 -0.71 6.93 72.52 0.50 -0.21 16 8 S -0.24 -4.60 23.44 -56.49 -1.32 -5.93 16 9 C 0.16 3.74 7.29 127.56 0.93 4.67 16 10 N -0.99 -30.06 2.95 -502.47 -1.48 -31.54 16 11 S 2.63 109.11 4.89 -56.49 -0.28 108.83 16 12 O -0.98 -43.85 17.42 -127.65 -2.22 -46.07 16 13 O -0.96 -48.25 13.55 -118.26 -1.60 -49.85 16 14 C -0.56 -22.52 5.89 71.98 0.42 -22.10 16 15 C -0.02 -0.74 0.85 -52.93 -0.04 -0.79 16 16 C -0.60 -33.87 8.17 25.60 0.21 -33.66 16 17 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 18 C 0.00 0.05 5.42 84.66 0.46 0.50 16 19 N -0.91 -51.77 13.61 21.45 0.29 -51.48 16 20 Si 1.09 51.34 29.91 68.60 2.05 53.39 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 C -0.18 -7.79 9.96 30.60 0.30 -7.49 16 25 C -0.15 -6.55 9.00 30.60 0.28 -6.28 16 26 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 28 H 0.04 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.12 1.64 7.84 -2.38 -0.02 1.62 16 31 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.12 5.05 7.60 -2.39 -0.02 5.03 16 34 H 0.14 4.42 8.09 -2.39 -0.02 4.40 16 35 H 0.27 14.96 6.07 -92.71 -0.56 14.40 16 36 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 38 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -78.74 350.98 1.40 -77.34 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.27 Total: 20.40 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 4.85 Total: -45.36 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -1.19 Total: -83.02 kcal Atomic # 8 Polarization: -121.69 SS G_CDS: -3.98 Total: -125.66 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Atomic # 16 Polarization: 104.50 SS G_CDS: -1.60 Total: 102.90 kcal Total: -78.74 1.40 -77.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331496395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.207 kcal (2) G-P(sol) polarization free energy of solvation -78.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds