Wall clock time and date at job start Tue Mar 31 2020 18:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86808 * 119.99932 * 2 1 4 4 H 1.48496 * 109.47293 * 274.98400 * 3 2 1 5 5 H 1.48498 * 109.47125 * 34.98526 * 3 2 1 6 6 H 1.48501 * 109.47016 * 154.98552 * 3 2 1 7 7 C 1.40043 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 173.93864 * 7 2 1 9 9 C 1.46375 * 119.99938 * 353.93004 * 7 2 1 10 10 O 1.21688 * 119.99809 * 8.95557 * 9 7 2 11 11 N 1.34777 * 120.00195 * 188.94790 * 9 7 2 12 12 C 1.47152 * 120.98070 * 3.60595 * 11 9 7 13 13 C 1.53296 * 108.38211 * 230.55292 * 12 11 9 14 14 O 1.42956 * 109.22329 * 307.69712 * 13 12 11 15 15 C 1.42960 * 114.16542 * 62.58108 * 14 13 12 16 16 C 1.47151 * 120.98524 * 183.62243 * 11 9 7 17 17 H 1.08994 * 109.71393 * 249.18905 * 16 11 9 18 18 C 1.50703 * 109.68026 * 9.72443 * 16 11 9 19 19 N 1.30321 * 126.15939 * 56.78502 * 18 16 11 20 20 N 1.28663 * 109.58833 * 180.02562 * 19 18 16 21 21 C 1.31529 * 109.22489 * 359.97438 * 20 19 18 22 22 C 1.47058 * 126.41360 * 179.97438 * 21 20 19 23 23 C 1.36147 * 125.33087 * 0.02707 * 22 21 20 24 24 C 1.37755 * 114.44496 * 179.75690 * 23 22 21 25 25 C 1.33705 * 115.18460 * 0.49840 * 24 23 22 26 26 S 1.75826 * 109.96152 * 359.52501 * 25 24 23 27 27 O 1.34556 * 126.16109 * 237.06027 * 18 16 11 28 28 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.68303 * 110.83051 * 12 11 9 30 30 H 1.09004 * 109.68232 * 350.27596 * 12 11 9 31 31 H 1.09004 * 109.50973 * 187.77024 * 13 12 11 32 32 H 1.09001 * 109.55544 * 67.64888 * 13 12 11 33 33 H 1.09003 * 109.50934 * 177.49143 * 15 14 13 34 34 H 1.08994 * 109.55305 * 57.37159 * 15 14 13 35 35 H 1.07998 * 122.78186 * 0.02562 * 23 22 21 36 36 H 1.07994 * 122.40716 * 180.30634 * 24 23 22 37 37 H 1.07999 * 125.01770 * 179.78609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0824 -1.2154 -0.0993 9 6 1.2812 -2.4770 0.1329 10 8 0.0655 -2.4891 0.0806 11 7 1.9594 -3.6275 0.3137 12 6 3.4238 -3.6288 0.4588 13 6 4.0053 -4.6590 -0.5162 14 8 3.3471 -5.9133 -0.3235 15 6 1.9446 -5.8867 -0.5993 16 6 1.2576 -4.9196 0.3714 17 1 1.3063 -5.3195 1.3842 18 6 -0.1825 -4.7333 -0.0319 19 7 -0.6071 -4.2297 -1.1564 20 7 -1.8937 -4.2193 -1.1658 21 6 -2.3391 -4.7222 -0.0350 22 6 -3.7483 -4.8875 0.3518 23 6 -4.8204 -4.5409 -0.4126 24 6 -6.0422 -4.7998 0.1685 25 6 -5.9882 -5.3387 1.3910 26 16 -4.3127 -5.5633 1.8744 27 8 -1.2614 -5.0523 0.7063 28 1 -0.4850 0.8401 -0.0004 29 1 3.6912 -3.8986 1.4805 30 1 3.8168 -2.6394 0.2250 31 1 5.0728 -4.7754 -0.3289 32 1 3.8502 -4.3200 -1.5405 33 1 1.5295 -6.8865 -0.4719 34 1 1.7805 -5.5523 -1.6236 35 1 -4.7212 -4.1035 -1.3950 36 1 -6.9766 -4.5802 -0.3264 37 1 -6.8469 -5.6015 1.9909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331547155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:37 Heat of formation + Delta-G solvation = 34.356171 kcal Electronic energy + Delta-G solvation = -26853.429185 eV Core-core repulsion = 22919.551928 eV Total energy + Delta-G solvation = -3933.877257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.29198 -39.38562 -37.68946 -36.93469 -35.31753 -33.84818 -32.85205 -32.36705 -30.92526 -28.28346 -27.25260 -26.11922 -24.84169 -24.28264 -22.47875 -21.95605 -21.60859 -19.56806 -18.87759 -18.09931 -17.16698 -16.69215 -16.31111 -15.83489 -15.77521 -15.63833 -14.99239 -14.84203 -14.69054 -14.30659 -13.81646 -13.64440 -13.10228 -12.87312 -12.70485 -12.66923 -12.28620 -12.12957 -11.83658 -11.49514 -11.37496 -11.10776 -11.05954 -10.99974 -10.90778 -10.64934 -10.36223 -10.23768 -10.13714 -9.90904 -9.73860 -8.95397 -8.56099 -8.40894 -7.57007 -7.28063 -6.30255 -4.79619 0.50827 1.42150 1.87929 2.01053 2.62082 2.81872 3.06381 3.13467 3.16766 3.40036 3.81691 3.98235 4.17127 4.38452 4.42134 4.94450 4.96432 5.09640 5.20039 5.31830 5.37823 5.39985 5.54443 5.56411 5.74339 5.77111 5.82898 5.95132 6.02855 6.12211 6.15267 6.29927 6.30490 6.38695 6.40008 7.13161 7.23062 7.32761 7.81587 8.09889 8.87293 9.10058 9.13948 10.34184 10.57051 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.004428 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.487013 B = 6321.469729 C = 8213.847380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.558 3.442 10 O -0.547 6.547 11 N -0.639 5.639 12 C 0.092 3.908 13 C 0.041 3.959 14 O -0.378 6.378 15 C 0.063 3.937 16 C 0.213 3.787 17 H 0.088 0.912 18 C 0.216 3.784 19 N -0.240 5.240 20 N -0.239 5.239 21 C 0.189 3.811 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.131 4.131 25 C -0.215 4.215 26 S 0.152 5.848 27 O -0.228 6.228 28 H 0.270 0.730 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -10.968 2.566 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.573 4.573 8 H 0.093 0.907 9 C 0.365 3.635 10 O -0.427 6.427 11 N -0.382 5.382 12 C -0.031 4.031 13 C -0.037 4.037 14 O -0.296 6.296 15 C -0.015 4.015 16 C 0.107 3.893 17 H 0.106 0.894 18 C 0.008 3.992 19 N -0.091 5.091 20 N -0.091 5.091 21 C -0.018 4.018 22 C -0.222 4.222 23 C -0.123 4.123 24 C -0.161 4.161 25 C -0.352 4.352 26 S 0.416 5.584 27 O -0.109 6.109 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.381 -11.049 2.756 11.879 hybrid contribution -0.363 1.430 0.081 1.477 sum -3.744 -9.619 2.837 10.705 Atomic orbital electron populations 1.70013 1.07100 1.27603 1.33872 1.25725 0.94631 1.00396 0.92543 0.86328 0.80204 0.81310 0.78830 1.19662 1.20374 1.18712 1.20811 0.93958 0.88748 1.53823 0.90685 1.18366 0.87035 0.81850 0.76228 1.90641 1.14070 1.82519 1.55519 1.48621 1.05945 1.03539 1.80050 1.22201 0.81287 1.01318 0.98337 1.23144 0.96782 0.84241 0.99516 1.87905 1.19688 1.32200 1.89841 1.22857 0.81728 0.98807 0.98140 1.19612 0.80955 0.88908 0.99865 0.89410 1.26765 0.90136 0.94818 0.87450 1.74265 1.01590 1.12702 1.20546 1.74648 1.03389 1.13514 1.17540 1.23488 0.86905 1.02746 0.88710 1.21252 0.89446 1.11425 1.00082 1.20604 0.89635 1.00410 1.01685 1.20007 0.98699 1.02185 0.95256 1.25858 0.99850 1.08605 1.00917 1.84318 0.98600 1.59912 1.15577 1.84706 1.15080 1.66351 1.44714 0.91900 0.92479 0.87296 0.88203 0.92321 0.88115 0.91248 0.82779 0.83467 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.48 11.87 55.55 0.66 -21.82 16 2 C 0.09 2.39 5.49 -17.37 -0.10 2.30 16 3 Si 0.91 19.67 29.56 -169.99 -5.03 14.64 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.54 -14.49 8.85 -35.63 -0.32 -14.80 16 8 H 0.08 1.81 5.74 -52.49 -0.30 1.51 16 9 C 0.56 15.28 7.39 -12.99 -0.10 15.18 16 10 O -0.55 -16.85 10.67 5.19 0.06 -16.79 16 11 N -0.64 -14.02 3.02 -167.71 -0.51 -14.52 16 12 C 0.09 1.58 6.55 -3.53 -0.02 1.56 16 13 C 0.04 0.58 6.98 37.31 0.26 0.85 16 14 O -0.38 -5.86 10.74 -35.23 -0.38 -6.24 16 15 C 0.06 1.02 6.27 37.31 0.23 1.26 16 16 C 0.21 4.18 3.62 -68.58 -0.25 3.93 16 17 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 18 C 0.22 4.90 4.90 -12.92 -0.06 4.84 16 19 N -0.24 -6.04 9.93 32.60 0.32 -5.72 16 20 N -0.24 -5.80 12.22 31.95 0.39 -5.41 16 21 C 0.19 4.09 8.24 -14.11 -0.12 3.98 16 22 C -0.10 -1.80 6.46 -36.76 -0.24 -2.03 16 23 C -0.09 -1.34 10.12 -40.51 -0.41 -1.75 16 24 C -0.13 -1.50 10.15 -41.35 -0.42 -1.92 16 25 C -0.22 -2.30 11.21 29.14 0.33 -1.98 16 26 S 0.15 2.06 23.31 -107.50 -2.51 -0.44 16 27 O -0.23 -5.03 10.90 3.32 0.04 -4.99 16 28 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 1.90 5.41 -51.93 -0.28 1.62 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 35 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -36.12 332.25 -6.67 -42.78 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.52 Total: 2.09 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -1.20 Total: 11.41 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.87 Total: -47.48 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.29 Total: -28.02 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.51 Total: -0.44 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.12 -6.67 -42.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331547155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.141 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds