Wall clock time and date at job start Tue Mar 31 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86808 * 119.99932 * 2 1 4 4 H 1.48496 * 109.47293 * 274.98400 * 3 2 1 5 5 H 1.48498 * 109.47125 * 34.98526 * 3 2 1 6 6 H 1.48501 * 109.47016 * 154.98552 * 3 2 1 7 7 C 1.40043 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 173.93864 * 7 2 1 9 9 C 1.46375 * 119.99938 * 353.93004 * 7 2 1 10 10 O 1.21688 * 119.99809 * 8.95557 * 9 7 2 11 11 N 1.34777 * 120.00195 * 188.94790 * 9 7 2 12 12 C 1.47152 * 120.98070 * 3.60595 * 11 9 7 13 13 C 1.53296 * 108.38211 * 230.55292 * 12 11 9 14 14 O 1.42956 * 109.22329 * 307.69712 * 13 12 11 15 15 C 1.42960 * 114.16542 * 62.58108 * 14 13 12 16 16 C 1.47151 * 120.98524 * 183.62243 * 11 9 7 17 17 H 1.08994 * 109.71393 * 249.18905 * 16 11 9 18 18 C 1.50703 * 109.68026 * 9.72443 * 16 11 9 19 19 N 1.30321 * 126.15939 * 56.78502 * 18 16 11 20 20 N 1.28663 * 109.58833 * 180.02562 * 19 18 16 21 21 C 1.31529 * 109.22489 * 359.97438 * 20 19 18 22 22 C 1.47058 * 126.41360 * 179.97438 * 21 20 19 23 23 C 1.36147 * 125.33087 * 0.02707 * 22 21 20 24 24 C 1.37755 * 114.44496 * 179.75690 * 23 22 21 25 25 C 1.33705 * 115.18460 * 0.49840 * 24 23 22 26 26 S 1.75826 * 109.96152 * 359.52501 * 25 24 23 27 27 O 1.34556 * 126.16109 * 237.06027 * 18 16 11 28 28 H 0.97000 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.68303 * 110.83051 * 12 11 9 30 30 H 1.09004 * 109.68232 * 350.27596 * 12 11 9 31 31 H 1.09004 * 109.50973 * 187.77024 * 13 12 11 32 32 H 1.09001 * 109.55544 * 67.64888 * 13 12 11 33 33 H 1.09003 * 109.50934 * 177.49143 * 15 14 13 34 34 H 1.08994 * 109.55305 * 57.37159 * 15 14 13 35 35 H 1.07998 * 122.78186 * 0.02562 * 23 22 21 36 36 H 1.07994 * 122.40716 * 180.30634 * 24 23 22 37 37 H 1.07999 * 125.01770 * 179.78609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0824 -1.2154 -0.0993 9 6 1.2812 -2.4770 0.1329 10 8 0.0655 -2.4891 0.0806 11 7 1.9594 -3.6275 0.3137 12 6 3.4238 -3.6288 0.4588 13 6 4.0053 -4.6590 -0.5162 14 8 3.3471 -5.9133 -0.3235 15 6 1.9446 -5.8867 -0.5993 16 6 1.2576 -4.9196 0.3714 17 1 1.3063 -5.3195 1.3842 18 6 -0.1825 -4.7333 -0.0319 19 7 -0.6071 -4.2297 -1.1564 20 7 -1.8937 -4.2193 -1.1658 21 6 -2.3391 -4.7222 -0.0350 22 6 -3.7483 -4.8875 0.3518 23 6 -4.8204 -4.5409 -0.4126 24 6 -6.0422 -4.7998 0.1685 25 6 -5.9882 -5.3387 1.3910 26 16 -4.3127 -5.5633 1.8744 27 8 -1.2614 -5.0523 0.7063 28 1 -0.4850 0.8401 -0.0004 29 1 3.6912 -3.8986 1.4805 30 1 3.8168 -2.6394 0.2250 31 1 5.0728 -4.7754 -0.3289 32 1 3.8502 -4.3200 -1.5405 33 1 1.5295 -6.8865 -0.4719 34 1 1.7805 -5.5523 -1.6236 35 1 -4.7212 -4.1035 -1.3950 36 1 -6.9766 -4.5802 -0.3264 37 1 -6.8469 -5.6015 1.9909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331547155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:36 Heat of formation + Delta-G solvation = 3.942003 kcal Electronic energy + Delta-G solvation = -26854.748042 eV Core-core repulsion = 22919.551928 eV Total energy + Delta-G solvation = -3935.196114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.97524 -40.90455 -38.78289 -38.65512 -37.03547 -35.55571 -34.71005 -34.05225 -32.23464 -29.71470 -28.92662 -27.87718 -26.11562 -25.80827 -23.88211 -23.52434 -23.22610 -21.15173 -20.17854 -19.39094 -18.83894 -18.43784 -18.01297 -17.50806 -17.16662 -16.81933 -16.57017 -16.26611 -16.21458 -15.86936 -15.35351 -14.96931 -14.53876 -14.39239 -14.22655 -13.85900 -13.72389 -13.40195 -13.34717 -13.22782 -13.07818 -12.83146 -12.75656 -12.54132 -12.29181 -12.04788 -12.00220 -11.78081 -11.75284 -11.39136 -11.18235 -10.93396 -9.93964 -9.62200 -9.26827 -9.10373 -8.31128 -6.89484 -0.73185 0.29215 0.55441 0.85421 1.13931 1.35679 1.36335 1.49101 1.52898 1.86406 2.14325 2.36770 2.47376 2.68322 2.97017 3.43414 3.58190 3.59860 3.78252 4.06452 4.10284 4.15754 4.22557 4.35644 4.38268 4.52174 4.56035 4.59255 4.61789 4.75433 4.82515 5.00341 5.01979 5.18729 5.31671 5.35086 5.51424 5.92458 6.00277 6.14013 6.81880 7.21967 7.41315 8.34520 8.58716 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.004428 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.487013 B = 6321.469729 C = 8213.847380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.240 1.240 7 C -0.561 4.561 8 H 0.099 0.901 9 C 0.540 3.460 10 O -0.593 6.593 11 N -0.645 5.645 12 C 0.086 3.914 13 C 0.046 3.954 14 O -0.371 6.371 15 C 0.077 3.923 16 C 0.208 3.792 17 H 0.106 0.894 18 C 0.206 3.794 19 N -0.277 5.277 20 N -0.290 5.290 21 C 0.206 3.794 22 C -0.173 4.173 23 C -0.072 4.072 24 C -0.141 4.141 25 C -0.172 4.172 26 S 0.156 5.844 27 O -0.235 6.235 28 H 0.270 0.730 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.052 0.948 35 H 0.145 0.855 36 H 0.187 0.813 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 -11.808 3.872 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.162 1.162 7 C -0.597 4.597 8 H 0.117 0.883 9 C 0.347 3.653 10 O -0.476 6.476 11 N -0.386 5.386 12 C -0.036 4.036 13 C -0.031 4.031 14 O -0.289 6.289 15 C -0.002 4.002 16 C 0.102 3.898 17 H 0.123 0.877 18 C -0.003 4.003 19 N -0.125 5.125 20 N -0.139 5.139 21 C -0.002 4.002 22 C -0.291 4.291 23 C -0.107 4.107 24 C -0.170 4.170 25 C -0.309 4.309 26 S 0.420 5.580 27 O -0.117 6.117 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.162 0.838 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.163 0.837 36 H 0.204 0.796 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.233 -11.933 4.041 13.007 hybrid contribution -0.597 1.568 -0.251 1.697 sum -3.830 -10.365 3.790 11.682 Atomic orbital electron populations 1.70222 1.09651 1.28673 1.36317 1.26969 0.95360 1.04947 0.91189 0.85048 0.79302 0.75261 0.78997 1.19138 1.20307 1.16236 1.21392 0.95303 0.89299 1.53733 0.88333 1.18720 0.86869 0.83636 0.76087 1.90617 1.15934 1.84256 1.56827 1.48431 1.07892 1.03253 1.78990 1.22481 0.78476 1.02228 1.00411 1.23256 0.98726 0.82962 0.98137 1.87929 1.18888 1.32517 1.89581 1.22795 0.82064 0.99274 0.96089 1.20072 0.79476 0.88521 1.01719 0.87653 1.27280 0.91220 0.94744 0.87086 1.74085 1.02322 1.13845 1.22278 1.74513 1.03421 1.16435 1.19575 1.24309 0.88418 0.99800 0.87689 1.21510 0.87817 1.16413 1.03380 1.20943 0.90664 0.98019 1.01064 1.20305 0.98480 1.02507 0.95716 1.26490 0.99259 1.04783 1.00335 1.84255 1.00793 1.59316 1.13600 1.84695 1.15357 1.66707 1.44934 0.91982 0.90434 0.87843 0.83756 0.93253 0.84999 0.93005 0.83685 0.79574 0.76662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.08 11.87 21.83 0.26 -50.82 16 2 C 0.03 1.70 5.49 85.30 0.47 2.17 16 3 Si 0.99 40.94 29.56 68.60 2.03 42.97 16 4 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.24 -8.85 7.11 99.48 0.71 -8.14 16 7 C -0.56 -31.01 8.85 24.83 0.22 -30.79 16 8 H 0.10 4.75 5.74 -2.91 -0.02 4.73 16 9 C 0.54 30.86 7.39 86.36 0.64 31.50 16 10 O -0.59 -38.73 10.67 -4.30 -0.05 -38.77 16 11 N -0.64 -28.81 3.02 -802.73 -2.42 -31.23 16 12 C 0.09 2.85 6.55 86.35 0.57 3.42 16 13 C 0.05 1.23 6.98 72.08 0.50 1.73 16 14 O -0.37 -10.69 10.74 -148.98 -1.60 -12.29 16 15 C 0.08 2.44 6.27 72.08 0.45 2.89 16 16 C 0.21 8.32 3.62 44.22 0.16 8.48 16 17 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 18 C 0.21 9.87 4.90 88.33 0.43 10.30 16 19 N -0.28 -14.90 9.93 -165.23 -1.64 -16.54 16 20 N -0.29 -15.17 12.22 -166.49 -2.04 -17.21 16 21 C 0.21 9.51 8.24 87.05 0.72 10.22 16 22 C -0.17 -6.20 6.46 24.10 0.16 -6.05 16 23 C -0.07 -2.12 10.12 21.67 0.22 -1.90 16 24 C -0.14 -2.80 10.15 21.13 0.21 -2.58 16 25 C -0.17 -2.99 11.21 66.79 0.75 -2.24 16 26 S 0.16 4.07 23.31 -56.49 -1.32 2.75 16 27 O -0.24 -11.01 10.90 -11.00 -0.12 -11.13 16 28 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.10 3.52 5.41 -2.38 -0.01 3.50 16 31 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 35 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -86.92 332.25 -0.26 -87.19 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.14 Total: 17.93 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: 5.50 Total: 27.15 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -5.84 Total: -115.80 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -1.77 Total: -62.19 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.32 Total: 2.75 kcal Total: -86.92 -0.26 -87.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331547155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.130 kcal (2) G-P(sol) polarization free energy of solvation -86.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds