Wall clock time and date at job start Tue Mar 31 2020 18:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37099 * 120.00352 * 2 1 4 4 H 1.07994 * 119.99934 * 204.39599 * 3 2 1 5 5 C 1.38952 * 119.99772 * 24.39218 * 3 2 1 6 6 N 1.31413 * 119.99942 * 12.64372 * 5 3 2 7 7 Si 1.86803 * 120.00166 * 192.64292 * 5 3 2 8 8 H 1.48499 * 109.46982 * 59.99925 * 7 5 3 9 9 H 1.48495 * 109.47115 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46824 * 300.00217 * 7 5 3 11 11 C 1.34781 * 119.99976 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00034 * 180.02562 * 11 2 1 13 13 C 1.50699 * 119.99887 * 0.02562 * 11 2 1 14 14 C 1.50698 * 109.47262 * 180.02562 * 13 11 2 15 15 C 1.33436 * 122.71780 * 124.99649 * 14 13 11 16 16 S 1.76173 * 108.06913 * 179.75003 * 15 14 13 17 17 C 1.70971 * 90.34298 * 0.29996 * 16 15 14 18 18 N 1.38865 * 124.94554 * 179.97438 * 17 16 15 19 19 C 1.34782 * 119.99998 * 359.69575 * 18 17 16 20 20 O 1.21704 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.46594 * 120.00166 * 180.02562 * 19 18 17 22 22 C 1.36578 * 125.98995 * 179.97438 * 21 19 18 23 23 C 1.40358 * 106.70521 * 180.02562 * 22 21 19 24 24 C 1.35139 * 107.12096 * 0.02562 * 23 22 21 25 25 O 1.33948 * 108.76951 * 0.23922 * 24 23 22 26 26 N 1.29654 * 110.10692 * 359.69586 * 17 16 15 27 27 H 1.08998 * 109.47835 * 265.86353 * 1 2 3 28 28 H 1.09004 * 109.47170 * 25.86303 * 1 2 3 29 29 H 1.08998 * 109.47514 * 145.86257 * 1 2 3 30 30 H 0.97004 * 120.00195 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47348 * 59.99761 * 13 11 2 32 32 H 1.09003 * 109.47268 * 299.99758 * 13 11 2 33 33 H 1.08004 * 125.96489 * 359.97312 * 15 14 13 34 34 H 0.97002 * 120.00075 * 179.69931 * 18 17 16 35 35 H 1.07998 * 126.64731 * 0.02562 * 22 21 19 36 36 H 1.08001 * 126.44182 * 180.02562 * 23 22 21 37 37 H 1.07996 * 125.61768 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2289 -0.3863 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1881 7 14 2.3237 4.0073 0.1827 8 1 2.4041 4.2482 -1.2805 9 1 1.4940 5.0646 0.8141 10 1 3.6895 4.0368 0.7649 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3645 -3.6178 0.0018 15 6 2.3431 -4.5840 0.9219 16 16 3.6406 -5.7176 0.5542 17 6 4.0934 -4.7762 -0.7992 18 7 5.1410 -5.0741 -1.6607 19 6 5.8913 -6.1745 -1.4540 20 8 5.6510 -6.9067 -0.5121 21 6 6.9976 -6.4888 -2.3631 22 6 7.8324 -7.5656 -2.2692 23 6 8.7364 -7.4698 -3.3386 24 6 8.4183 -6.3527 -4.0295 25 8 7.3736 -5.7613 -3.4354 26 7 3.3127 -3.7467 -0.9074 27 1 -0.3635 -0.0741 1.0249 28 1 -0.3634 0.9248 -0.4483 29 1 -0.3634 -0.8506 -0.5767 30 1 0.0143 3.0517 1.5348 31 1 0.7590 -2.5303 -0.8896 32 1 0.7583 -2.5299 0.8903 33 1 1.6489 -4.6599 1.7458 34 1 5.3328 -4.4903 -2.4112 35 1 7.8028 -8.3406 -1.5177 36 1 9.5359 -8.1592 -3.5666 37 1 8.9258 -5.9935 -4.9125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337530849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:29 Heat of formation + Delta-G solvation = -5.491293 kcal Electronic energy + Delta-G solvation = -25053.470499 eV Core-core repulsion = 21117.865327 eV Total energy + Delta-G solvation = -3935.605172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.77357 -41.58151 -40.81899 -39.74121 -36.67031 -36.28297 -34.14078 -33.72530 -32.54414 -31.07020 -29.31231 -27.92557 -26.46003 -25.99718 -23.98336 -22.79216 -22.34604 -21.56176 -20.60283 -19.21497 -19.10246 -18.82277 -17.96072 -17.66457 -17.56140 -17.40004 -16.64457 -16.32239 -16.16470 -15.97220 -15.84685 -15.07093 -14.95154 -14.32459 -14.18181 -14.00291 -13.90349 -13.87458 -13.62078 -13.31117 -13.11149 -12.96359 -12.74533 -12.62022 -12.30710 -12.13216 -12.03528 -11.48041 -11.11748 -10.97447 -10.70358 -10.30496 -10.15754 -9.86897 -9.60871 -9.25557 -8.31404 -5.95531 -0.50239 0.04241 0.13040 0.79326 1.28295 1.29307 1.38977 1.39662 1.50348 1.67000 1.82651 2.02161 2.11742 2.30677 3.11228 3.20068 3.36580 3.53456 3.88598 4.03934 4.16162 4.18898 4.41737 4.50379 4.55146 4.60431 4.71169 4.78177 4.86436 4.88862 5.08264 5.13147 5.31124 5.41358 5.46144 5.56155 5.92199 6.13962 6.40408 6.54115 6.84371 7.22044 7.51870 8.11048 8.71586 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.002594 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.963382 B =10790.934978 C =12090.538716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.469 5.469 3 C -0.341 4.341 4 H 0.064 0.936 5 C -0.003 4.003 6 N -0.896 5.896 7 Si 0.987 3.013 8 H -0.268 1.268 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.446 3.554 12 O -0.619 6.619 13 C -0.049 4.049 14 C 0.094 3.906 15 C -0.299 4.299 16 S 0.252 5.748 17 C 0.216 3.784 18 N -0.612 5.612 19 C 0.606 3.394 20 O -0.512 6.512 21 C -0.118 4.118 22 C -0.097 4.097 23 C -0.232 4.232 24 C 0.022 3.978 25 O -0.177 6.177 26 N -0.508 5.508 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.208 0.792 34 H 0.431 0.569 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 -20.810 -8.575 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.189 5.189 3 C -0.469 4.469 4 H 0.082 0.918 5 C -0.205 4.205 6 N -0.535 5.535 7 Si 0.810 3.190 8 H -0.193 1.193 9 H -0.192 1.192 10 H -0.205 1.205 11 C 0.235 3.765 12 O -0.505 6.505 13 C -0.092 4.092 14 C -0.038 4.038 15 C -0.438 4.438 16 S 0.502 5.498 17 C -0.151 4.151 18 N -0.260 5.260 19 C 0.395 3.605 20 O -0.390 6.390 21 C -0.169 4.169 22 C -0.117 4.117 23 C -0.251 4.251 24 C -0.047 4.047 25 O -0.073 6.073 26 N -0.230 5.230 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.225 0.775 34 H 0.271 0.729 35 H 0.189 0.811 36 H 0.208 0.792 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 9.658 -21.487 -7.934 24.858 hybrid contribution -0.112 2.199 -0.408 2.239 sum 9.546 -19.288 -8.342 23.081 Atomic orbital electron populations 1.21456 0.79252 1.00843 1.00748 1.43824 1.06774 1.04428 1.63893 1.19480 1.00212 0.86340 1.40898 0.91807 1.26041 0.97163 1.02756 0.94501 1.70046 1.19653 1.30696 1.33128 0.85108 0.77927 0.77134 0.78804 1.19301 1.19214 1.20543 1.20802 0.88002 0.85895 0.81817 1.90496 1.16148 1.87832 1.56063 1.20212 0.95587 0.87256 1.06103 1.19401 0.95370 0.97147 0.91904 1.27531 1.08123 1.01189 1.06994 1.84287 1.23198 1.22551 1.19807 1.23534 0.96026 0.96925 0.98623 1.42606 1.27737 1.26494 1.29189 1.16913 0.80320 0.79441 0.83832 1.90796 1.68931 1.49187 1.30086 1.21081 1.02935 0.98418 0.94444 1.22357 0.92982 0.96658 0.99752 1.22295 1.04256 1.01619 0.96899 1.25530 0.86785 0.93225 0.99183 1.84102 1.42332 1.46614 1.34265 1.65986 1.06967 1.19156 1.30865 0.93538 0.92605 0.91278 0.91743 0.86704 0.85537 0.77488 0.72945 0.81108 0.79211 0.72811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.32 8.44 127.77 1.08 6.39 16 2 N -0.47 -25.13 3.01 -658.90 -1.98 -27.11 16 3 C -0.34 -20.21 9.24 84.04 0.78 -19.43 16 4 H 0.06 4.08 7.45 -2.91 -0.02 4.06 16 5 C 0.00 -0.17 5.04 84.93 0.43 0.26 16 6 N -0.90 -48.49 10.83 21.66 0.23 -48.26 16 7 Si 0.99 43.88 29.57 68.60 2.03 45.91 16 8 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 C 0.45 23.01 7.59 87.66 0.67 23.68 16 12 O -0.62 -37.50 15.16 -3.08 -0.05 -37.55 16 13 C -0.05 -1.86 4.80 29.10 0.14 -1.72 16 14 C 0.09 3.55 5.63 41.45 0.23 3.78 16 15 C -0.30 -9.11 11.05 66.73 0.74 -8.38 16 16 S 0.25 7.52 20.21 -56.49 -1.14 6.38 16 17 C 0.22 7.55 8.19 179.24 1.47 9.02 16 18 N -0.61 -18.00 5.39 -317.37 -1.71 -19.71 16 19 C 0.61 16.17 7.74 86.42 0.67 16.84 16 20 O -0.51 -15.16 14.32 -4.36 -0.06 -15.22 16 21 C -0.12 -2.47 7.13 24.06 0.17 -2.29 16 22 C -0.10 -1.55 10.62 22.40 0.24 -1.31 16 23 C -0.23 -2.29 10.87 22.07 0.24 -2.05 16 24 C 0.02 0.21 12.08 67.11 0.81 1.02 16 25 O -0.18 -3.14 10.40 -5.27 -0.05 -3.20 16 26 N -0.51 -20.71 9.73 -189.68 -1.85 -22.56 16 27 H 0.05 2.07 7.83 -2.39 -0.02 2.05 16 28 H 0.06 2.64 6.80 -2.38 -0.02 2.63 16 29 H 0.07 2.40 6.61 -2.39 -0.02 2.39 16 30 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.12 3.77 7.41 -2.39 -0.02 3.76 16 32 H 0.13 3.94 7.99 -2.39 -0.02 3.92 16 33 H 0.21 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.43 11.60 8.57 -92.71 -0.79 10.81 16 35 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.26 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -81.91 341.58 3.43 -78.48 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.35 Total: 17.02 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 7.66 Total: 25.82 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -5.31 Total: -117.64 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.16 Total: -55.97 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 7.52 SS G_CDS: -1.14 Total: 6.38 kcal Total: -81.91 3.43 -78.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337530849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.993 kcal (2) G-P(sol) polarization free energy of solvation -81.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds