Wall clock time and date at job start Tue Mar 31 2020 17:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46980 * 308.00283 * 3 2 1 5 5 C 1.36938 * 119.99793 * 86.80505 * 4 3 2 6 6 H 1.08001 * 119.99627 * 172.94997 * 5 4 3 7 7 C 1.38812 * 120.00103 * 352.66633 * 5 4 3 8 8 N 1.31616 * 119.99605 * 335.08373 * 7 5 4 9 9 Si 1.86801 * 119.99947 * 155.08780 * 7 5 4 10 10 H 1.48494 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47034 * 120.00294 * 9 7 5 12 12 H 1.48493 * 109.46917 * 239.99875 * 9 7 5 13 13 S 1.65600 * 120.00128 * 266.79863 * 4 3 2 14 14 O 1.42099 * 106.39947 * 23.54081 * 13 4 3 15 15 O 1.42098 * 106.40346 * 156.46370 * 13 4 3 16 16 C 1.76207 * 107.21886 * 270.00237 * 13 4 3 17 17 C 1.38379 * 119.91052 * 269.72679 * 16 13 4 18 18 C 1.38433 * 120.44166 * 179.78651 * 17 16 13 19 19 C 1.37768 * 119.93526 * 0.49608 * 18 17 16 20 20 C 1.39709 * 119.83772 * 359.74299 * 19 18 17 21 21 C 1.38094 * 119.90633 * 89.99913 * 16 13 4 22 22 C 1.47886 * 118.78560 * 180.02562 * 20 19 18 23 23 O 1.21551 * 120.44726 * 197.66067 * 22 20 19 24 24 N 1.34816 * 119.09754 * 17.65372 * 22 20 19 25 25 C 1.46040 * 121.17138 * 2.77117 * 24 22 20 26 26 C 1.50551 * 120.95238 * 179.70141 * 19 18 17 27 27 H 1.08999 * 109.46762 * 188.00422 * 3 2 1 28 28 H 1.09004 * 109.47361 * 68.00518 * 3 2 1 29 29 H 0.97009 * 119.99876 * 180.02562 * 8 7 5 30 30 H 1.08007 * 119.77493 * 0.02562 * 17 16 13 31 31 H 1.08003 * 120.03157 * 180.26193 * 18 17 16 32 32 H 1.07997 * 120.21515 * 359.94060 * 21 16 13 33 33 H 0.97005 * 119.41584 * 182.80049 * 24 22 20 34 34 H 1.08997 * 109.15984 * 82.66177 * 25 24 22 35 35 H 1.08997 * 109.16090 * 201.90426 * 25 24 22 36 36 H 1.09003 * 109.39743 * 25.93865 * 26 19 18 37 37 H 1.09001 * 109.31665 * 266.17588 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8495 1.0884 5 6 3.2632 -2.1935 0.8853 6 1 3.7293 -2.8010 1.6470 7 6 2.8276 -2.7761 -0.2970 8 7 1.8596 -2.2143 -0.9897 9 14 3.6151 -4.3572 -0.9046 10 1 4.6722 -4.7816 0.0479 11 1 2.5815 -5.4189 -1.0031 12 1 4.2178 -4.1277 -2.2422 13 16 3.4479 -0.1853 2.5641 14 8 2.6922 1.0147 2.6541 15 8 3.3490 -1.2391 3.5123 16 6 5.1428 0.2955 2.5297 17 6 6.1212 -0.5959 2.9334 18 6 7.4564 -0.2313 2.9066 19 6 7.8163 1.0301 2.4855 20 6 6.8317 1.9354 2.0816 21 6 5.4905 1.5627 2.1052 22 6 7.2441 3.2830 1.6334 23 8 6.4357 4.1893 1.5821 24 7 8.5289 3.4926 1.2826 25 6 9.4997 2.4016 1.2811 26 6 9.2608 1.4531 2.4536 27 1 2.9708 1.0185 0.1431 28 1 2.9716 -0.3841 -0.9529 29 1 1.5549 -2.6216 -1.8157 30 1 5.8415 -1.5840 3.2679 31 1 8.2149 -0.9337 3.2192 32 1 4.7270 2.2600 1.7933 33 1 8.8136 4.3840 1.0271 34 1 9.4117 1.8458 0.3476 35 1 10.5046 2.8168 1.3568 36 1 9.8934 0.5725 2.3415 37 1 9.5086 1.9604 3.3860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341419584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:53 Heat of formation + Delta-G solvation = -34.033594 kcal Electronic energy + Delta-G solvation = -26700.519182 eV Core-core repulsion = 22763.676322 eV Total energy + Delta-G solvation = -3936.842859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -40.74784 -38.23877 -36.67068 -36.42925 -36.32720 -35.04292 -34.31891 -32.37572 -31.53748 -31.16861 -29.34341 -27.44349 -24.52136 -24.16444 -24.03458 -21.88692 -20.08559 -18.71252 -18.15518 -17.87476 -17.47728 -16.86327 -16.27729 -16.12897 -15.71150 -15.33685 -14.92356 -14.56867 -14.34300 -14.28129 -13.81873 -13.66834 -13.57906 -13.36038 -12.98360 -12.67329 -12.29658 -12.11387 -11.74786 -11.70422 -11.56161 -11.49040 -11.35143 -11.24973 -11.12709 -11.00316 -10.58387 -10.48452 -10.29632 -10.12927 -9.99642 -9.65050 -9.43730 -9.10011 -9.02107 -8.35860 -6.47583 -4.00154 0.61265 1.03234 1.19751 2.62788 2.98612 3.12348 3.22185 3.25281 3.50631 3.76538 4.11271 4.21827 4.29234 4.29825 4.38109 4.39464 4.59608 4.70727 4.80338 4.87734 4.93385 5.10701 5.23963 5.27222 5.41772 5.44182 5.51699 5.63964 5.83142 5.91637 6.04129 6.17977 6.21073 6.50807 6.55747 6.77464 6.90213 6.93327 7.41890 8.02315 8.17125 8.70640 9.02819 9.10279 10.57123 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004501 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.343294 B = 6219.278215 C = 6849.709353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.261 3.739 3 C 0.240 3.760 4 N -0.839 5.839 5 C -0.327 4.327 6 H 0.117 0.883 7 C 0.047 3.953 8 N -0.866 5.866 9 Si 0.912 3.088 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.280 1.280 13 S 2.658 3.342 14 O -0.969 6.969 15 O -0.956 6.956 16 C -0.680 4.680 17 C 0.016 3.984 18 C -0.148 4.148 19 C -0.014 4.014 20 C -0.167 4.167 21 C 0.039 3.961 22 C 0.569 3.431 23 O -0.530 6.530 24 N -0.730 5.730 25 C 0.114 3.886 26 C -0.106 4.106 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.273 0.727 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.306 5.132 2.391 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.058 4.058 3 C 0.110 3.890 4 N -0.671 5.671 5 C -0.458 4.458 6 H 0.134 0.866 7 C -0.159 4.159 8 N -0.505 5.505 9 Si 0.738 3.262 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.205 1.205 13 S 2.746 3.254 14 O -0.959 6.959 15 O -0.946 6.946 16 C -0.761 4.761 17 C -0.003 4.003 18 C -0.167 4.167 19 C -0.015 4.015 20 C -0.171 4.171 21 C 0.019 3.981 22 C 0.357 3.643 23 O -0.407 6.407 24 N -0.384 5.384 25 C -0.010 4.010 26 C -0.144 4.144 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.241 0.759 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.557 5.526 3.001 18.650 hybrid contribution 1.758 -0.656 -0.896 2.080 sum 19.316 4.870 2.104 20.031 Atomic orbital electron populations 1.80836 1.13632 1.12113 1.09344 1.28938 0.95081 0.89850 0.91968 1.18298 0.82340 0.92914 0.95403 1.53157 1.71656 1.14249 1.28022 1.19340 1.41172 0.80879 1.04384 0.86568 1.25026 0.94967 0.99357 0.96588 1.69910 1.22103 1.41605 1.16882 0.86127 0.79565 0.81596 0.78912 1.19164 1.20912 1.20534 1.03517 0.74915 0.72909 0.74023 1.93540 1.68511 1.47523 1.86329 1.93497 1.86156 1.55466 1.59468 1.32046 1.28886 1.02024 1.13153 1.21187 0.91883 0.98413 0.88794 1.21031 0.96695 0.95845 1.03136 1.20145 0.94607 0.93236 0.93465 1.19716 0.94464 0.94574 1.08308 1.20925 0.95269 0.93544 0.88356 1.18246 0.81764 0.88041 0.76279 1.90838 1.51317 1.45111 1.53400 1.45686 1.09287 1.12895 1.70486 1.21291 0.92447 0.88680 0.98593 1.20930 0.93035 1.00584 0.99815 0.90023 0.85619 0.91576 0.83587 0.84650 0.83241 0.75938 0.91209 0.89241 0.88131 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.42 18.54 42.15 0.78 -11.64 16 2 C 0.26 6.30 13.30 -20.76 -0.28 6.02 16 3 C 0.24 5.00 5.10 -6.83 -0.03 4.97 16 4 N -0.84 -18.38 2.88 -62.77 -0.18 -18.56 16 5 C -0.33 -7.61 9.38 -15.06 -0.14 -7.75 16 6 H 0.12 2.63 7.40 -52.49 -0.39 2.24 16 7 C 0.05 1.10 4.92 -17.43 -0.09 1.02 16 8 N -0.87 -21.38 8.96 55.49 0.50 -20.89 16 9 Si 0.91 18.39 29.62 -169.99 -5.04 13.35 16 10 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 13 S 2.66 54.84 5.60 -107.50 -0.60 54.24 16 14 O -0.97 -21.63 16.29 -57.17 -0.93 -22.56 16 15 O -0.96 -21.66 16.14 -57.17 -0.92 -22.58 16 16 C -0.68 -11.48 5.97 -39.58 -0.24 -11.72 16 17 C 0.02 0.24 9.51 -39.46 -0.38 -0.14 16 18 C -0.15 -1.68 9.73 -39.68 -0.39 -2.07 16 19 C -0.01 -0.15 5.68 -104.32 -0.59 -0.74 16 20 C -0.17 -2.36 5.78 -105.03 -0.61 -2.97 16 21 C 0.04 0.64 9.11 -39.27 -0.36 0.28 16 22 C 0.57 7.87 7.79 -12.29 -0.10 7.77 16 23 O -0.53 -9.27 17.46 5.32 0.09 -9.18 16 24 N -0.73 -6.64 5.58 -61.70 -0.34 -6.98 16 25 C 0.11 0.67 7.03 -4.45 -0.03 0.64 16 26 C -0.11 -0.70 6.04 -28.11 -0.17 -0.87 16 27 H 0.08 1.40 7.67 -51.93 -0.40 1.00 16 28 H 0.13 2.56 6.45 -51.93 -0.33 2.22 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.15 2.00 7.59 -52.48 -0.40 1.61 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.15 2.49 7.41 -52.49 -0.39 2.10 16 33 H 0.40 2.94 8.92 -40.82 -0.36 2.57 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -33.84 336.06 -8.49 -42.33 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.52 Total: 2.97 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.39 Total: -5.56 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.75 Total: -58.07 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -1.76 Total: -54.32 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.35 kcal Atomic # 16 Polarization: 54.84 SS G_CDS: -0.60 Total: 54.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.84 -8.49 -42.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341419584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.294 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds