Wall clock time and date at job start Tue Mar 31 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46980 * 308.00283 * 3 2 1 5 5 C 1.36938 * 119.99793 * 86.80505 * 4 3 2 6 6 H 1.08001 * 119.99627 * 172.94997 * 5 4 3 7 7 C 1.38812 * 120.00103 * 352.66633 * 5 4 3 8 8 N 1.31616 * 119.99605 * 335.08373 * 7 5 4 9 9 Si 1.86801 * 119.99947 * 155.08780 * 7 5 4 10 10 H 1.48494 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47034 * 120.00294 * 9 7 5 12 12 H 1.48493 * 109.46917 * 239.99875 * 9 7 5 13 13 S 1.65600 * 120.00128 * 266.79863 * 4 3 2 14 14 O 1.42099 * 106.39947 * 23.54081 * 13 4 3 15 15 O 1.42098 * 106.40346 * 156.46370 * 13 4 3 16 16 C 1.76207 * 107.21886 * 270.00237 * 13 4 3 17 17 C 1.38379 * 119.91052 * 269.72679 * 16 13 4 18 18 C 1.38433 * 120.44166 * 179.78651 * 17 16 13 19 19 C 1.37768 * 119.93526 * 0.49608 * 18 17 16 20 20 C 1.39709 * 119.83772 * 359.74299 * 19 18 17 21 21 C 1.38094 * 119.90633 * 89.99913 * 16 13 4 22 22 C 1.47886 * 118.78560 * 180.02562 * 20 19 18 23 23 O 1.21551 * 120.44726 * 197.66067 * 22 20 19 24 24 N 1.34816 * 119.09754 * 17.65372 * 22 20 19 25 25 C 1.46040 * 121.17138 * 2.77117 * 24 22 20 26 26 C 1.50551 * 120.95238 * 179.70141 * 19 18 17 27 27 H 1.08999 * 109.46762 * 188.00422 * 3 2 1 28 28 H 1.09004 * 109.47361 * 68.00518 * 3 2 1 29 29 H 0.97009 * 119.99876 * 180.02562 * 8 7 5 30 30 H 1.08007 * 119.77493 * 0.02562 * 17 16 13 31 31 H 1.08003 * 120.03157 * 180.26193 * 18 17 16 32 32 H 1.07997 * 120.21515 * 359.94060 * 21 16 13 33 33 H 0.97005 * 119.41584 * 182.80049 * 24 22 20 34 34 H 1.08997 * 109.15984 * 82.66177 * 25 24 22 35 35 H 1.08997 * 109.16090 * 201.90426 * 25 24 22 36 36 H 1.09003 * 109.39743 * 25.93865 * 26 19 18 37 37 H 1.09001 * 109.31665 * 266.17588 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8495 1.0884 5 6 3.2632 -2.1935 0.8853 6 1 3.7293 -2.8010 1.6470 7 6 2.8276 -2.7761 -0.2970 8 7 1.8596 -2.2143 -0.9897 9 14 3.6151 -4.3572 -0.9046 10 1 4.6722 -4.7816 0.0479 11 1 2.5815 -5.4189 -1.0031 12 1 4.2178 -4.1277 -2.2422 13 16 3.4479 -0.1853 2.5641 14 8 2.6922 1.0147 2.6541 15 8 3.3490 -1.2391 3.5123 16 6 5.1428 0.2955 2.5297 17 6 6.1212 -0.5959 2.9334 18 6 7.4564 -0.2313 2.9066 19 6 7.8163 1.0301 2.4855 20 6 6.8317 1.9354 2.0816 21 6 5.4905 1.5627 2.1052 22 6 7.2441 3.2830 1.6334 23 8 6.4357 4.1893 1.5821 24 7 8.5289 3.4926 1.2826 25 6 9.4997 2.4016 1.2811 26 6 9.2608 1.4531 2.4536 27 1 2.9708 1.0185 0.1431 28 1 2.9716 -0.3841 -0.9529 29 1 1.5549 -2.6216 -1.8157 30 1 5.8415 -1.5840 3.2679 31 1 8.2149 -0.9337 3.2192 32 1 4.7270 2.2600 1.7933 33 1 8.8136 4.3840 1.0271 34 1 9.4117 1.8458 0.3476 35 1 10.5046 2.8168 1.3568 36 1 9.8934 0.5725 2.3415 37 1 9.5086 1.9604 3.3860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341419584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:51 Heat of formation + Delta-G solvation = -60.257035 kcal Electronic energy + Delta-G solvation = -26701.656315 eV Core-core repulsion = 22763.676322 eV Total energy + Delta-G solvation = -3937.979993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.70640 -39.31823 -38.41804 -38.18282 -37.17903 -36.81316 -36.22433 -33.33415 -33.24152 -32.23956 -30.17475 -29.17043 -25.85452 -25.36116 -25.14045 -22.84293 -21.21284 -20.20049 -19.80669 -19.22368 -18.53333 -18.32378 -17.77101 -17.06669 -16.96580 -16.60003 -16.24165 -16.13708 -15.65547 -15.35321 -15.20979 -14.81812 -14.73658 -14.46798 -14.18292 -14.07839 -13.57120 -13.44398 -13.29514 -13.17155 -13.12851 -12.98612 -12.96557 -12.71227 -12.66143 -12.33575 -12.18031 -12.06029 -11.90325 -11.72533 -11.37674 -11.06376 -10.38502 -10.15090 -10.09769 -9.94672 -8.19294 -5.81947 -0.58900 -0.35806 -0.04781 1.52682 1.55830 1.58993 1.69074 1.94336 2.20835 2.34579 2.43068 2.55026 2.69680 2.90066 3.11900 3.29959 3.53677 3.57932 3.64925 3.70636 3.94728 4.14186 4.26473 4.35889 4.37479 4.41150 4.67929 4.77945 4.83892 4.89003 4.96497 5.06099 5.11588 5.23829 5.25764 5.65339 5.67984 5.91849 6.10316 6.42367 6.99598 7.11994 7.12139 7.35687 8.85699 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.004501 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.343294 B = 6219.278215 C = 6849.709353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.265 3.735 3 C 0.242 3.758 4 N -0.862 5.862 5 C -0.340 4.340 6 H 0.116 0.884 7 C 0.002 3.998 8 N -0.909 5.909 9 Si 0.976 3.024 10 H -0.253 1.253 11 H -0.299 1.299 12 H -0.274 1.274 13 S 2.681 3.319 14 O -0.999 6.999 15 O -0.985 6.985 16 C -0.681 4.681 17 C 0.005 3.995 18 C -0.133 4.133 19 C 0.007 3.993 20 C -0.181 4.181 21 C 0.020 3.980 22 C 0.562 3.438 23 O -0.582 6.582 24 N -0.712 5.712 25 C 0.105 3.895 26 C -0.106 4.106 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.111 4.863 3.042 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.053 4.053 3 C 0.112 3.888 4 N -0.694 5.694 5 C -0.468 4.468 6 H 0.134 0.866 7 C -0.199 4.199 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.176 1.176 11 H -0.227 1.227 12 H -0.200 1.200 13 S 2.776 3.224 14 O -0.990 6.990 15 O -0.976 6.976 16 C -0.770 4.770 17 C -0.014 4.014 18 C -0.152 4.152 19 C 0.006 3.994 20 C -0.185 4.185 21 C 0.000 4.000 22 C 0.350 3.650 23 O -0.463 6.463 24 N -0.364 5.364 25 C -0.018 4.018 26 C -0.143 4.143 27 H 0.131 0.869 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.169 0.831 31 H 0.203 0.797 32 H 0.150 0.850 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 23.351 5.189 3.626 24.194 hybrid contribution 0.199 -0.402 -0.865 0.974 sum 23.550 4.787 2.762 24.190 Atomic orbital electron populations 1.80795 1.15062 1.13765 1.10823 1.29888 0.96131 0.88539 0.90717 1.18666 0.80143 0.94538 0.95447 1.53004 1.75641 1.14559 1.26195 1.19525 1.40434 0.82393 1.04483 0.86598 1.25730 0.95158 1.01909 0.97122 1.70008 1.24301 1.43140 1.17510 0.85151 0.78382 0.77624 0.78759 1.17603 1.22668 1.19952 1.01674 0.75541 0.72126 0.73040 1.93505 1.70097 1.48812 1.86548 1.93460 1.87102 1.56604 1.60417 1.30774 1.25038 1.03457 1.17745 1.21467 0.93185 0.98136 0.88657 1.21517 0.95881 0.96626 1.01142 1.20785 0.96722 0.92133 0.89743 1.19891 0.94066 0.95707 1.08801 1.20847 0.96656 0.93052 0.89472 1.18332 0.82978 0.87335 0.76387 1.90814 1.53180 1.46386 1.55957 1.45705 1.08048 1.14579 1.68117 1.21712 0.93414 0.87913 0.98770 1.21193 0.89746 1.02514 1.00802 0.86894 0.84895 0.92279 0.83081 0.79707 0.84954 0.74787 0.90564 0.84798 0.84031 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.52 18.54 20.01 0.37 -28.15 16 2 C 0.27 13.44 13.30 89.44 1.19 14.63 16 3 C 0.24 10.45 5.10 84.57 0.43 10.88 16 4 N -0.86 -38.89 2.88 -352.51 -1.02 -39.90 16 5 C -0.34 -16.17 9.38 84.03 0.79 -15.38 16 6 H 0.12 5.34 7.40 -2.91 -0.02 5.32 16 7 C 0.00 0.11 4.92 84.86 0.42 0.52 16 8 N -0.91 -46.67 8.96 21.65 0.19 -46.48 16 9 Si 0.98 38.23 29.62 68.60 2.03 40.26 16 10 H -0.25 -9.13 7.11 99.48 0.71 -8.43 16 11 H -0.30 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 13 S 2.68 113.80 5.60 -56.49 -0.32 113.48 16 14 O -1.00 -46.61 16.29 -128.00 -2.08 -48.69 16 15 O -0.99 -45.77 16.14 -128.00 -2.07 -47.83 16 16 C -0.68 -22.67 5.97 22.27 0.13 -22.54 16 17 C 0.01 0.13 9.51 22.35 0.21 0.35 16 18 C -0.13 -2.32 9.73 22.20 0.22 -2.11 16 19 C 0.01 0.12 5.68 -19.67 -0.11 0.01 16 20 C -0.18 -4.72 5.78 -20.13 -0.12 -4.83 16 21 C 0.02 0.66 9.11 22.47 0.20 0.86 16 22 C 0.56 14.57 7.79 86.79 0.68 15.25 16 23 O -0.58 -20.53 17.46 -3.88 -0.07 -20.60 16 24 N -0.71 -10.28 5.58 -467.39 -2.61 -12.89 16 25 C 0.10 0.58 7.03 86.36 0.61 1.19 16 26 C -0.11 -0.64 6.04 29.70 0.18 -0.46 16 27 H 0.11 4.03 7.67 -2.39 -0.02 4.02 16 28 H 0.13 5.62 6.45 -2.39 -0.02 5.60 16 29 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16 30 H 0.15 3.82 7.59 -2.91 -0.02 3.80 16 31 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.13 4.65 7.41 -2.91 -0.02 4.63 16 33 H 0.41 4.61 8.92 -92.70 -0.83 3.78 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.14 -0.11 8.08 -2.39 -0.02 -0.13 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -80.20 336.06 -0.41 -80.61 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.32 Total: 11.81 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.83 Total: -1.62 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -3.06 Total: -127.43 kcal Atomic # 8 Polarization: -112.90 SS G_CDS: -4.22 Total: -117.12 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Atomic # 16 Polarization: 113.80 SS G_CDS: -0.32 Total: 113.48 kcal Total: -80.20 -0.41 -80.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341419584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.356 kcal (2) G-P(sol) polarization free energy of solvation -80.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds