Wall clock time and date at job start Tue Mar 31 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33659 * 125.79900 * 2 1 4 4 C 1.34217 * 110.90739 * 179.73473 * 3 2 1 5 5 C 1.34177 * 109.13143 * 0.45128 * 4 3 2 6 6 C 1.36437 * 125.80777 * 180.02562 * 2 1 3 7 7 C 1.47340 * 127.19213 * 0.03277 * 6 2 1 8 8 O 1.21623 * 120.00360 * 359.97438 * 7 6 2 9 9 N 1.34783 * 119.99958 * 179.97438 * 7 6 2 10 10 C 1.38913 * 120.00021 * 179.97438 * 9 7 6 11 11 N 1.29642 * 124.94312 * 179.71938 * 10 9 7 12 12 C 1.32006 * 116.90635 * 179.81775 * 11 10 9 13 13 C 1.50700 * 122.71168 * 180.19133 * 12 11 10 14 14 C 1.50702 * 109.47045 * 305.30381 * 13 12 11 15 15 O 1.21289 * 120.00063 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99880 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99886 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99906 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99851 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99780 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00079 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46968 * 90.00069 * 21 19 17 23 23 H 1.48495 * 109.47392 * 210.00251 * 21 19 17 24 24 H 1.48504 * 109.47111 * 330.00440 * 21 19 17 25 25 C 1.33433 * 114.57205 * 0.47067 * 12 11 10 26 26 S 1.70966 * 124.94571 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.46873 * 269.99260 * 1 2 3 28 28 H 1.08992 * 109.47715 * 29.99517 * 1 2 3 29 29 H 1.09004 * 109.46854 * 150.00373 * 1 2 3 30 30 H 1.07995 * 125.43669 * 180.32060 * 4 3 2 31 31 H 1.08002 * 127.02647 * 179.84069 * 5 4 3 32 32 H 0.97001 * 119.99514 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.47506 * 65.30027 * 13 12 11 34 34 H 1.08996 * 109.46796 * 185.30644 * 13 12 11 35 35 H 0.96997 * 120.00205 * 359.97438 * 16 14 13 36 36 H 0.97003 * 119.99391 * 180.02562 * 20 19 17 37 37 H 1.07995 * 125.96369 * 179.73441 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0841 0.0000 4 6 3.5860 0.7392 0.0058 5 6 3.6852 -0.5989 -0.0002 6 6 2.3053 -1.1065 -0.0005 7 6 1.8745 -2.5155 -0.0018 8 8 0.6895 -2.7892 -0.0021 9 7 2.7937 -3.5012 -0.0027 10 6 2.3876 -4.8297 -0.0034 11 7 3.1868 -5.8504 -0.0094 12 6 2.6282 -7.0465 -0.0053 13 6 3.4324 -8.3210 -0.0072 14 6 4.3897 -8.3091 -1.1710 15 8 4.4160 -7.3595 -1.9251 16 7 5.2159 -9.3543 -1.3746 17 6 6.0865 -9.3438 -2.4337 18 1 6.1099 -8.4982 -3.1051 19 6 6.9387 -10.4211 -2.6433 20 7 7.7735 -10.4107 -3.6582 21 14 6.8988 -11.8834 -1.4816 22 1 5.9178 -12.8823 -1.9768 23 1 8.2469 -12.5026 -1.4187 24 1 6.4996 -11.4277 -0.1258 25 6 1.2939 -7.0357 -0.0053 26 16 0.7611 -5.3564 -0.0038 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8901 -0.5138 30 1 4.4172 1.4286 0.0120 31 1 4.5932 -1.1837 -0.0002 32 1 3.7389 -3.2829 -0.0028 33 1 3.9936 -8.3979 0.9240 34 1 2.7605 -9.1743 -0.0981 35 1 5.1947 -10.1139 -0.7718 36 1 8.3681 -11.1630 -3.8046 37 1 0.6526 -7.9046 -0.0064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343031686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:41 Heat of formation + Delta-G solvation = 2.771167 kcal Electronic energy + Delta-G solvation = -24836.795324 eV Core-core repulsion = 20901.548439 eV Total energy + Delta-G solvation = -3935.246885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.02222 -40.40958 -39.45491 -37.90438 -35.19517 -33.88390 -33.50638 -32.28891 -31.68689 -30.98297 -28.06192 -27.40238 -25.16382 -24.47447 -23.02626 -21.60950 -21.04630 -19.76243 -19.21606 -18.55889 -17.89141 -17.70983 -16.80483 -16.48130 -16.21815 -15.88626 -15.48231 -15.22073 -14.85721 -14.14856 -14.06339 -13.94343 -13.71615 -13.52936 -13.31850 -13.30240 -13.17669 -12.82016 -12.42274 -12.20083 -12.08555 -11.80167 -11.35420 -11.11779 -10.80595 -10.54958 -10.29492 -10.16114 -9.92276 -9.50881 -9.39837 -9.04983 -8.90673 -8.49170 -8.11758 -8.01792 -6.25480 -3.76393 0.68390 1.15908 1.33954 1.63729 2.04266 2.31920 2.63128 2.75343 3.07203 3.10785 3.18666 3.28605 3.84044 4.05781 4.15231 4.30212 4.39726 4.68244 4.78517 4.84125 5.10656 5.12439 5.22190 5.27364 5.37533 5.42174 5.63472 5.69274 5.76831 5.82622 5.87413 6.02372 6.04305 6.41641 6.54573 6.84550 7.59269 7.63241 8.09373 8.20561 8.66273 9.01406 9.48780 9.90783 10.87987 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002447 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.486121 B =11439.365250 C =12530.887694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.094 3.906 3 O -0.173 6.173 4 C -0.034 4.034 5 C -0.185 4.185 6 C -0.248 4.248 7 C 0.594 3.406 8 O -0.511 6.511 9 N -0.613 5.613 10 C 0.240 3.760 11 N -0.471 5.471 12 C 0.130 3.870 13 C -0.066 4.066 14 C 0.459 3.541 15 O -0.558 6.558 16 N -0.594 5.594 17 C -0.302 4.302 18 H 0.118 0.882 19 C 0.039 3.961 20 N -0.885 5.885 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.316 4.316 26 S 0.216 5.784 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.212 0.788 31 H 0.162 0.838 32 H 0.423 0.577 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.370 0.630 36 H 0.272 0.728 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.149 18.650 12.452 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 O -0.069 6.069 4 C -0.099 4.099 5 C -0.205 4.205 6 C -0.253 4.253 7 C 0.383 3.617 8 O -0.388 6.388 9 N -0.261 5.261 10 C -0.128 4.128 11 N -0.192 5.192 12 C -0.003 4.003 13 C -0.109 4.109 14 C 0.244 3.756 15 O -0.439 6.439 16 N -0.234 5.234 17 C -0.430 4.430 18 H 0.136 0.864 19 C -0.163 4.163 20 N -0.525 5.525 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.456 4.456 26 S 0.465 5.535 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.228 0.772 31 H 0.179 0.821 32 H 0.262 0.738 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.203 0.797 36 H 0.083 0.917 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.267 20.001 11.796 27.790 hybrid contribution 1.752 -2.153 0.715 2.866 sum -13.514 17.849 12.511 25.646 Atomic orbital electron populations 1.20690 0.83401 1.05466 1.04711 1.22853 0.94214 0.82907 0.96031 1.83807 1.17304 1.34711 1.71093 1.23907 0.83408 0.96360 1.06238 1.22948 0.96529 0.94782 1.06203 1.20676 0.93932 0.92241 1.18442 1.17281 0.84845 0.83928 0.75648 1.90706 1.16086 1.82508 1.49493 1.42437 1.11800 1.01185 1.70726 1.23264 0.95418 0.88872 1.05255 1.66034 1.37018 0.97294 1.18858 1.19168 0.90216 0.91676 0.99256 1.20237 0.97662 0.92906 1.00135 1.19509 0.84109 0.84356 0.87628 1.90585 1.70759 1.34513 1.48068 1.42195 1.35677 1.17845 1.27685 1.19422 1.13001 1.06328 1.04273 0.86434 1.25031 0.96329 0.97960 0.96986 1.69628 1.22524 1.31810 1.28567 0.86668 0.78635 0.83211 0.80873 1.19663 1.20281 1.19408 1.27127 0.98832 1.02898 1.16719 1.84474 1.04297 0.95592 1.69122 0.88937 0.90023 0.87074 0.77182 0.82059 0.73764 0.88524 0.88443 0.79687 0.91724 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 9.89 36.01 0.36 -0.23 16 2 C 0.09 0.85 7.37 -34.96 -0.26 0.59 16 3 O -0.17 -1.44 10.52 7.63 0.08 -1.36 16 4 C -0.03 -0.22 12.03 29.30 0.35 0.13 16 5 C -0.19 -1.51 10.60 -37.45 -0.40 -1.91 16 6 C -0.25 -2.57 6.31 -103.28 -0.65 -3.22 16 7 C 0.59 7.49 7.77 -12.56 -0.10 7.40 16 8 O -0.51 -7.03 12.30 5.26 0.06 -6.97 16 9 N -0.61 -8.34 5.40 -14.08 -0.08 -8.42 16 10 C 0.24 3.96 8.19 -87.42 -0.72 3.24 16 11 N -0.47 -9.05 9.71 -11.29 -0.11 -9.16 16 12 C 0.13 2.33 5.64 -84.20 -0.47 1.86 16 13 C -0.07 -1.16 6.19 -29.03 -0.18 -1.34 16 14 C 0.46 10.87 7.75 -10.98 -0.09 10.79 16 15 O -0.56 -15.70 15.01 5.55 0.08 -15.62 16 16 N -0.59 -14.53 5.09 -10.96 -0.06 -14.59 16 17 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 18 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 19 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 20 N -0.88 -26.32 13.96 55.50 0.77 -25.54 16 21 Si 0.88 19.67 27.74 -169.99 -4.71 14.95 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 25 C -0.32 -4.73 11.05 29.05 0.32 -4.41 16 26 S 0.22 3.13 20.21 -107.50 -2.17 0.96 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.11 0.90 6.48 -51.93 -0.34 0.56 16 30 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.16 1.03 7.74 -52.49 -0.41 0.62 16 32 H 0.42 5.01 7.99 -40.82 -0.33 4.68 16 33 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 35 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -37.58 341.36 -6.45 -44.03 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -3.39 Total: 11.56 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.08 Total: 5.02 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.53 Total: -57.71 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.23 Total: -23.95 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.95 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.17 Total: 0.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.58 -6.45 -44.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343031686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.801 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds