Wall clock time and date at job start Tue Mar 31 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33659 * 125.79900 * 2 1 4 4 C 1.34217 * 110.90739 * 179.73473 * 3 2 1 5 5 C 1.34177 * 109.13143 * 0.45128 * 4 3 2 6 6 C 1.36437 * 125.80777 * 180.02562 * 2 1 3 7 7 C 1.47340 * 127.19213 * 0.03277 * 6 2 1 8 8 O 1.21623 * 120.00360 * 359.97438 * 7 6 2 9 9 N 1.34783 * 119.99958 * 179.97438 * 7 6 2 10 10 C 1.38913 * 120.00021 * 179.97438 * 9 7 6 11 11 N 1.29642 * 124.94312 * 179.71938 * 10 9 7 12 12 C 1.32006 * 116.90635 * 179.81775 * 11 10 9 13 13 C 1.50700 * 122.71168 * 180.19133 * 12 11 10 14 14 C 1.50702 * 109.47045 * 305.30381 * 13 12 11 15 15 O 1.21289 * 120.00063 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99880 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99886 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99906 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99851 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99780 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00079 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46968 * 90.00069 * 21 19 17 23 23 H 1.48495 * 109.47392 * 210.00251 * 21 19 17 24 24 H 1.48504 * 109.47111 * 330.00440 * 21 19 17 25 25 C 1.33433 * 114.57205 * 0.47067 * 12 11 10 26 26 S 1.70966 * 124.94571 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.46873 * 269.99260 * 1 2 3 28 28 H 1.08992 * 109.47715 * 29.99517 * 1 2 3 29 29 H 1.09004 * 109.46854 * 150.00373 * 1 2 3 30 30 H 1.07995 * 125.43669 * 180.32060 * 4 3 2 31 31 H 1.08002 * 127.02647 * 179.84069 * 5 4 3 32 32 H 0.97001 * 119.99514 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.47506 * 65.30027 * 13 12 11 34 34 H 1.08996 * 109.46796 * 185.30644 * 13 12 11 35 35 H 0.96997 * 120.00205 * 359.97438 * 16 14 13 36 36 H 0.97003 * 119.99391 * 180.02562 * 20 19 17 37 37 H 1.07995 * 125.96369 * 179.73441 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0841 0.0000 4 6 3.5860 0.7392 0.0058 5 6 3.6852 -0.5989 -0.0002 6 6 2.3053 -1.1065 -0.0005 7 6 1.8745 -2.5155 -0.0018 8 8 0.6895 -2.7892 -0.0021 9 7 2.7937 -3.5012 -0.0027 10 6 2.3876 -4.8297 -0.0034 11 7 3.1868 -5.8504 -0.0094 12 6 2.6282 -7.0465 -0.0053 13 6 3.4324 -8.3210 -0.0072 14 6 4.3897 -8.3091 -1.1710 15 8 4.4160 -7.3595 -1.9251 16 7 5.2159 -9.3543 -1.3746 17 6 6.0865 -9.3438 -2.4337 18 1 6.1099 -8.4982 -3.1051 19 6 6.9387 -10.4211 -2.6433 20 7 7.7735 -10.4107 -3.6582 21 14 6.8988 -11.8834 -1.4816 22 1 5.9178 -12.8823 -1.9768 23 1 8.2469 -12.5026 -1.4187 24 1 6.4996 -11.4277 -0.1258 25 6 1.2939 -7.0357 -0.0053 26 16 0.7611 -5.3564 -0.0038 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8901 -0.5138 30 1 4.4172 1.4286 0.0120 31 1 4.5932 -1.1837 -0.0002 32 1 3.7389 -3.2829 -0.0028 33 1 3.9936 -8.3979 0.9240 34 1 2.7605 -9.1743 -0.0981 35 1 5.1947 -10.1139 -0.7718 36 1 8.3681 -11.1630 -3.8046 37 1 0.6526 -7.9046 -0.0064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343031686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:40 Heat of formation + Delta-G solvation = -25.891157 kcal Electronic energy + Delta-G solvation = -24838.038216 eV Core-core repulsion = 20901.548439 eV Total energy + Delta-G solvation = -3936.489777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.67021 -41.51563 -40.75269 -39.65195 -36.32192 -35.90188 -34.22655 -33.76087 -32.90419 -32.34106 -29.38980 -28.14317 -26.67851 -25.88693 -24.02683 -22.47809 -22.07593 -21.35605 -20.65040 -20.08830 -19.03028 -18.72769 -17.90394 -17.51997 -17.41798 -17.05662 -16.82128 -16.54365 -16.01460 -15.74711 -15.53517 -15.09207 -14.84975 -14.70609 -14.39500 -14.16147 -14.04135 -13.94148 -13.84563 -13.82390 -13.29520 -12.87388 -12.78633 -12.48661 -12.39627 -11.99110 -11.92843 -11.48503 -11.21429 -10.99274 -10.66073 -10.41109 -10.22323 -10.11443 -9.68629 -9.20405 -8.39720 -6.00338 -0.33973 0.17489 0.24714 0.88356 0.99986 1.32089 1.37633 1.44678 1.46547 1.71802 1.88690 2.00873 2.15764 2.25162 3.05538 3.17852 3.38068 3.49810 3.58218 3.74762 4.16586 4.30175 4.32844 4.45898 4.52350 4.60256 4.62372 4.69492 4.73430 4.78287 4.84160 5.15962 5.21078 5.27316 5.57361 5.74780 5.96017 6.00023 6.59724 6.61004 6.89198 6.90730 7.41864 8.00664 8.78354 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002447 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.486121 B =11439.365250 C =12530.887694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.095 3.905 3 O -0.175 6.175 4 C -0.020 4.020 5 C -0.205 4.205 6 C -0.276 4.276 7 C 0.593 3.407 8 O -0.527 6.527 9 N -0.614 5.614 10 C 0.219 3.781 11 N -0.514 5.514 12 C 0.090 3.910 13 C -0.053 4.053 14 C 0.456 3.544 15 O -0.611 6.611 16 N -0.593 5.593 17 C -0.326 4.326 18 H 0.050 0.950 19 C -0.018 4.018 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.255 1.255 23 H -0.276 1.276 24 H -0.230 1.230 25 C -0.301 4.301 26 S 0.249 5.751 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.251 0.749 31 H 0.172 0.828 32 H 0.427 0.573 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.391 0.609 36 H 0.278 0.722 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 17.928 15.046 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 O -0.071 6.071 4 C -0.085 4.085 5 C -0.224 4.224 6 C -0.280 4.280 7 C 0.383 3.617 8 O -0.405 6.405 9 N -0.263 5.263 10 C -0.149 4.149 11 N -0.236 5.236 12 C -0.042 4.042 13 C -0.095 4.095 14 C 0.244 3.756 15 O -0.495 6.495 16 N -0.235 5.235 17 C -0.455 4.455 18 H 0.069 0.931 19 C -0.216 4.216 20 N -0.579 5.579 21 Si 0.786 3.214 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.153 1.153 25 C -0.441 4.441 26 S 0.498 5.502 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.267 0.733 31 H 0.189 0.811 32 H 0.267 0.733 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.227 0.773 36 H 0.088 0.912 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -16.792 19.301 14.414 29.364 hybrid contribution 2.184 -1.722 -0.184 2.787 sum -14.608 17.579 14.229 26.924 Atomic orbital electron populations 1.20755 0.82123 1.05763 1.05564 1.23212 0.95111 0.82728 0.94894 1.83841 1.18007 1.34361 1.70868 1.24667 0.83500 0.96506 1.03838 1.23175 0.96077 0.95726 1.07392 1.20709 0.95575 0.91233 1.20516 1.17657 0.84524 0.84573 0.74907 1.90671 1.16608 1.82840 1.50408 1.42561 1.12345 1.00571 1.70796 1.23593 0.96489 0.89410 1.05362 1.66007 1.38840 0.98417 1.20356 1.19390 0.91473 0.91552 1.01789 1.20260 0.97025 0.94629 0.97626 1.20766 0.83760 0.82798 0.88310 1.90562 1.72118 1.36429 1.50420 1.42008 1.35311 1.19118 1.27029 1.18977 1.15665 1.05307 1.05591 0.93140 1.26150 0.94757 1.01635 0.99056 1.69817 1.23523 1.33470 1.31074 0.85339 0.79090 0.77505 0.79427 1.17905 1.20143 1.15276 1.27552 0.98256 1.04378 1.13870 1.84321 1.02668 0.95107 1.68078 0.87695 0.87873 0.88541 0.73306 0.81058 0.73306 0.85963 0.83965 0.77314 0.91209 0.77241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.89 71.24 0.70 -0.39 16 2 C 0.09 1.64 7.37 25.27 0.19 1.83 16 3 O -0.18 -2.64 10.52 4.39 0.05 -2.59 16 4 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 5 C -0.20 -3.23 10.60 23.65 0.25 -2.98 16 6 C -0.28 -5.71 6.31 -19.00 -0.12 -5.83 16 7 C 0.59 15.29 7.77 86.64 0.67 15.96 16 8 O -0.53 -14.65 12.30 -4.10 -0.05 -14.70 16 9 N -0.61 -17.31 5.40 -316.71 -1.71 -19.02 16 10 C 0.22 7.33 8.19 179.23 1.47 8.80 16 11 N -0.51 -19.97 9.71 -189.65 -1.84 -21.81 16 12 C 0.09 3.13 5.64 41.44 0.23 3.36 16 13 C -0.05 -1.72 6.19 29.10 0.18 -1.54 16 14 C 0.46 21.65 7.75 87.66 0.68 22.33 16 15 O -0.61 -35.91 15.01 -3.06 -0.05 -35.95 16 16 N -0.59 -28.80 5.09 -306.98 -1.56 -30.36 16 17 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16 18 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 19 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 20 N -0.94 -57.72 13.96 21.66 0.30 -57.42 16 21 Si 0.97 39.37 27.74 68.60 1.90 41.27 16 22 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 25 C -0.30 -8.30 11.05 66.73 0.74 -7.57 16 26 S 0.25 6.98 20.21 -56.49 -1.14 5.84 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 1.55 6.48 -2.38 -0.02 1.53 16 30 H 0.25 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.17 2.19 7.74 -2.91 -0.02 2.16 16 32 H 0.43 10.77 7.99 -92.71 -0.74 10.03 16 33 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.14 3.30 8.03 -2.39 -0.02 3.28 16 35 H 0.39 15.51 5.76 -92.71 -0.53 14.97 16 36 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.21 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -88.94 341.36 2.85 -86.09 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.17 Total: 33.47 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.12 Total: 15.19 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -4.81 Total: -128.62 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.05 Total: -53.24 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.90 Total: 41.27 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.14 Total: 5.84 kcal Total: -88.94 2.85 -86.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343031686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.195 kcal (2) G-P(sol) polarization free energy of solvation -88.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds