Wall clock time and date at job start Tue Mar 31 2020 19:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47242 * 270.00241 * 3 2 1 5 5 H 1.48500 * 109.46800 * 30.00307 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00045 * 3 2 1 7 7 C 1.38952 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99876 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99812 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00051 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99839 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46838 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99489 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00437 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.46494 * 109.47576 * 180.02562 * 16 14 13 18 18 C 1.36870 * 125.06550 * 264.97776 * 17 16 14 19 19 C 1.34225 * 109.92883 * 180.02562 * 18 17 16 20 20 C 1.46508 * 106.99831 * 0.24291 * 19 18 17 21 21 C 1.39627 * 134.00836 * 179.70814 * 20 19 18 22 22 C 1.36615 * 119.78497 * 180.02562 * 21 20 19 23 23 C 1.38938 * 120.51228 * 359.97438 * 22 21 20 24 24 Cl 1.73594 * 119.68131 * 180.02562 * 23 22 21 25 25 C 1.37857 * 120.63715 * 359.61252 * 23 22 21 26 26 C 1.37689 * 125.06926 * 85.00876 * 17 16 14 27 27 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00269 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47001 * 59.99946 * 12 10 9 30 30 H 1.09005 * 109.47395 * 300.00278 * 12 10 9 31 31 H 0.96992 * 120.00133 * 0.02562 * 13 12 10 32 32 H 1.09003 * 109.47233 * 60.00062 * 16 14 13 33 33 H 1.09005 * 109.47148 * 300.00403 * 16 14 13 34 34 H 1.07997 * 125.03183 * 0.03326 * 18 17 16 35 35 H 1.08002 * 126.49701 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.11012 * 0.03633 * 21 20 19 37 37 H 1.07994 * 119.74246 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.11643 * 179.87442 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7465 -7.2471 -0.0027 15 8 0.5542 -7.4688 -0.0028 16 6 2.7258 -8.3925 -0.0027 17 7 1.9934 -9.6613 -0.0033 18 6 1.6848 -10.3916 1.1123 19 6 1.0111 -11.4986 0.7625 20 6 0.8823 -11.4785 -0.6968 21 6 0.3014 -12.3379 -1.6314 22 6 0.3512 -12.0283 -2.9610 23 6 0.9752 -10.8638 -3.3912 24 17 1.0253 -10.4912 -5.0860 25 6 1.5476 -9.9973 -2.4846 26 6 1.5135 -10.2971 -1.1264 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0016 29 1 0.6175 -4.9204 -0.8924 30 1 0.6167 -4.9209 0.8875 31 1 3.1494 -5.7991 -0.0022 32 1 3.3524 -8.3348 0.8874 33 1 3.3526 -8.3348 -0.8926 34 1 1.9447 -10.1177 2.1241 35 1 0.6387 -12.2618 1.4298 36 1 -0.1859 -13.2446 -1.3042 37 1 -0.0980 -12.6937 -3.6833 38 1 2.0323 -9.0955 -2.8284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343563894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:41 Heat of formation + Delta-G solvation = -14.274435 kcal Electronic energy + Delta-G solvation = -24773.918823 eV Core-core repulsion = 20835.889079 eV Total energy + Delta-G solvation = -3938.029744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64682 -39.63666 -38.25255 -37.58838 -36.15896 -34.60029 -33.81661 -33.10318 -31.47499 -30.86727 -28.99575 -28.42879 -26.50810 -24.48144 -23.03293 -21.88916 -20.98629 -20.24481 -19.68390 -18.28099 -17.63586 -17.46236 -16.81679 -16.02275 -15.72211 -15.61416 -15.47032 -14.84940 -14.50238 -14.41102 -14.36450 -13.94898 -13.89058 -13.44925 -13.37547 -13.20611 -12.76581 -12.55017 -12.30950 -12.03912 -11.92392 -11.69882 -11.46379 -11.18093 -11.11423 -10.98803 -10.51543 -10.38849 -10.09740 -9.75702 -9.71057 -9.01520 -8.73937 -8.32912 -8.18195 -7.87096 -6.58461 -4.00969 0.81193 1.31672 1.92910 2.34038 2.49425 2.58661 3.06505 3.17077 3.20394 3.26695 3.62957 3.64583 4.04740 4.39455 4.43499 4.58133 4.66434 4.74326 4.77099 4.85713 5.02970 5.09760 5.18588 5.28856 5.39390 5.67542 5.73796 5.77024 5.82874 5.95609 6.04603 6.21500 6.42746 6.45008 6.53943 6.91924 6.97969 7.39224 7.54471 7.83589 8.17020 8.36495 8.96939 9.30700 9.77843 10.58229 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.002216 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.033179 B =12634.772065 C =13646.665771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.110 3.890 13 N -0.702 5.702 14 C 0.488 3.512 15 O -0.528 6.528 16 C 0.090 3.910 17 N -0.464 5.464 18 C 0.068 3.932 19 C -0.203 4.203 20 C -0.104 4.104 21 C -0.059 4.059 22 C -0.140 4.140 23 C -0.016 4.016 24 Cl -0.072 7.072 25 C -0.113 4.113 26 C 0.119 3.881 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.412 0.588 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -23.197 -1.310 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.018 4.018 13 N -0.357 5.357 14 C 0.272 3.728 15 O -0.404 6.404 16 C -0.036 4.036 17 N -0.146 5.146 18 C -0.057 4.057 19 C -0.227 4.227 20 C -0.109 4.109 21 C -0.078 4.078 22 C -0.160 4.160 23 C -0.044 4.044 24 Cl -0.044 7.044 25 C -0.134 4.134 26 C 0.012 3.988 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.250 0.750 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.188 0.812 35 H 0.167 0.833 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.330 -22.814 -1.419 22.977 hybrid contribution 0.170 1.281 -0.116 1.297 sum 2.501 -21.534 -1.535 21.733 Atomic orbital electron populations 1.69610 1.06054 1.28672 1.48954 1.25348 0.95675 1.00020 0.96622 0.85802 0.79225 0.80389 0.78561 1.20190 1.20734 1.19277 1.19731 0.93471 0.81937 1.48472 0.87617 1.41801 1.09524 1.04503 1.62255 1.19677 0.88270 0.84926 0.85967 1.90494 1.13644 1.86778 1.57648 1.20980 0.91766 0.85666 1.03377 1.45643 1.11825 1.04397 1.73856 1.20796 0.90082 0.84146 0.77819 1.90777 1.16199 1.84500 1.48909 1.21627 0.93639 0.81280 1.07038 1.43390 1.48243 1.18010 1.04962 1.21859 1.00324 0.92473 0.91012 1.21634 1.07753 1.00665 0.92660 1.19257 1.02294 0.95317 0.94013 1.20163 0.97865 0.98573 0.91159 1.20460 1.02671 0.96737 0.96148 1.20358 1.02882 0.96620 0.84500 1.98365 1.97414 1.94499 1.14085 1.19761 1.03987 1.00455 0.89193 1.17875 0.99536 0.93625 0.87732 0.91479 0.77007 0.89745 0.89740 0.74972 0.85747 0.86445 0.81226 0.83260 0.85132 0.85088 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 13.05 55.50 0.72 -22.78 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.31 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.11 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.20 5.29 -10.96 -0.06 -13.26 16 10 C 0.43 9.36 7.85 -10.98 -0.09 9.27 16 11 O -0.60 -14.62 15.24 5.55 0.08 -14.54 16 12 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16 13 N -0.70 -10.36 5.53 -61.47 -0.34 -10.70 16 14 C 0.49 6.79 7.90 -10.98 -0.09 6.70 16 15 O -0.53 -9.48 16.42 5.56 0.09 -9.39 16 16 C 0.09 0.86 6.48 -5.20 -0.03 0.83 16 17 N -0.46 -5.22 2.27 -115.71 -0.26 -5.48 16 18 C 0.07 0.66 11.28 -16.72 -0.19 0.48 16 19 C -0.20 -2.03 11.08 -37.67 -0.42 -2.45 16 20 C -0.10 -1.23 6.37 -105.13 -0.67 -1.90 16 21 C -0.06 -0.60 10.05 -39.65 -0.40 -1.00 16 22 C -0.14 -1.44 9.75 -39.91 -0.39 -1.83 16 23 C -0.02 -0.18 6.31 -39.46 -0.25 -0.43 16 24 Cl -0.07 -0.80 28.93 -51.86 -1.50 -2.30 16 25 C -0.11 -1.40 9.76 -39.39 -0.38 -1.78 16 26 C 0.12 1.50 6.80 -83.99 -0.57 0.93 16 27 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.41 5.74 7.44 -40.82 -0.30 5.44 16 32 H 0.12 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -32.89 356.21 -8.60 -41.50 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -3.94 Total: 13.46 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -3.75 Total: 2.98 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.06 Total: -52.22 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.18 Total: -23.93 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.89 -8.60 -41.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343563894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.222 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds