Wall clock time and date at job start Tue Mar 31 2020 19:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47242 * 270.00241 * 3 2 1 5 5 H 1.48500 * 109.46800 * 30.00307 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00045 * 3 2 1 7 7 C 1.38952 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99876 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99812 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00051 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99839 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46838 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99489 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00437 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99832 * 180.02562 * 14 13 12 17 17 N 1.46494 * 109.47576 * 180.02562 * 16 14 13 18 18 C 1.36870 * 125.06550 * 264.97776 * 17 16 14 19 19 C 1.34225 * 109.92883 * 180.02562 * 18 17 16 20 20 C 1.46508 * 106.99831 * 0.24291 * 19 18 17 21 21 C 1.39627 * 134.00836 * 179.70814 * 20 19 18 22 22 C 1.36615 * 119.78497 * 180.02562 * 21 20 19 23 23 C 1.38938 * 120.51228 * 359.97438 * 22 21 20 24 24 Cl 1.73594 * 119.68131 * 180.02562 * 23 22 21 25 25 C 1.37857 * 120.63715 * 359.61252 * 23 22 21 26 26 C 1.37689 * 125.06926 * 85.00876 * 17 16 14 27 27 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00269 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47001 * 59.99946 * 12 10 9 30 30 H 1.09005 * 109.47395 * 300.00278 * 12 10 9 31 31 H 0.96992 * 120.00133 * 0.02562 * 13 12 10 32 32 H 1.09003 * 109.47233 * 60.00062 * 16 14 13 33 33 H 1.09005 * 109.47148 * 300.00403 * 16 14 13 34 34 H 1.07997 * 125.03183 * 0.03326 * 18 17 16 35 35 H 1.08002 * 126.49701 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.11012 * 0.03633 * 21 20 19 37 37 H 1.07994 * 119.74246 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.11643 * 179.87442 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7465 -7.2471 -0.0027 15 8 0.5542 -7.4688 -0.0028 16 6 2.7258 -8.3925 -0.0027 17 7 1.9934 -9.6613 -0.0033 18 6 1.6848 -10.3916 1.1123 19 6 1.0111 -11.4986 0.7625 20 6 0.8823 -11.4785 -0.6968 21 6 0.3014 -12.3379 -1.6314 22 6 0.3512 -12.0283 -2.9610 23 6 0.9752 -10.8638 -3.3912 24 17 1.0253 -10.4912 -5.0860 25 6 1.5476 -9.9973 -2.4846 26 6 1.5135 -10.2971 -1.1264 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0016 29 1 0.6175 -4.9204 -0.8924 30 1 0.6167 -4.9209 0.8875 31 1 3.1494 -5.7991 -0.0022 32 1 3.3524 -8.3348 0.8874 33 1 3.3526 -8.3348 -0.8926 34 1 1.9447 -10.1177 2.1241 35 1 0.6387 -12.2618 1.4298 36 1 -0.1859 -13.2446 -1.3042 37 1 -0.0980 -12.6937 -3.6833 38 1 2.0323 -9.0955 -2.8284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343563894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:40 Heat of formation + Delta-G solvation = -35.391745 kcal Electronic energy + Delta-G solvation = -24774.834538 eV Core-core repulsion = 20835.889079 eV Total energy + Delta-G solvation = -3938.945460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44603 -40.93162 -39.89243 -38.44033 -36.99612 -36.29145 -35.37407 -33.92531 -33.39904 -31.71835 -29.93768 -29.55046 -27.69954 -26.18730 -23.84344 -22.72889 -21.98850 -21.45125 -21.09079 -20.11176 -18.92374 -18.35171 -17.59846 -17.33816 -16.91357 -16.88890 -16.71459 -16.41066 -15.82812 -15.76634 -15.45901 -15.14121 -14.94474 -14.65167 -14.18573 -13.99923 -13.92516 -13.76509 -13.61111 -13.56571 -13.09355 -12.91599 -12.75878 -12.48067 -12.29059 -12.14199 -11.96344 -11.80415 -11.59202 -11.20737 -10.62397 -10.58379 -10.30328 -10.11915 -9.15292 -8.65270 -8.53526 -6.04025 -0.00328 0.49115 1.08669 1.34344 1.41006 1.41686 1.48224 1.55018 1.83969 1.87773 2.13669 2.31599 2.80330 3.08312 3.13733 3.57529 3.67189 3.74204 3.93104 4.01640 4.15435 4.17541 4.24811 4.36224 4.38121 4.42994 4.55158 4.67805 4.95949 4.99175 5.15796 5.24746 5.36037 5.42395 5.68601 5.77548 5.88708 6.10752 6.22964 6.41391 6.46763 7.00560 7.03924 7.41152 7.90448 8.63300 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.002216 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.033179 B =12634.772065 C =13646.665771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.123 3.877 13 N -0.700 5.700 14 C 0.492 3.508 15 O -0.570 6.570 16 C 0.095 3.905 17 N -0.471 5.471 18 C 0.062 3.938 19 C -0.211 4.211 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.145 4.145 23 C -0.027 4.027 24 Cl -0.073 7.073 25 C -0.131 4.131 26 C 0.093 3.907 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.418 0.582 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.202 0.798 35 H 0.173 0.827 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -24.226 -0.556 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.005 4.005 13 N -0.356 5.356 14 C 0.278 3.722 15 O -0.449 6.449 16 C -0.030 4.030 17 N -0.153 5.153 18 C -0.062 4.062 19 C -0.235 4.235 20 C -0.130 4.130 21 C -0.078 4.078 22 C -0.165 4.165 23 C -0.055 4.055 24 Cl -0.044 7.044 25 C -0.153 4.153 26 C -0.013 4.013 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.257 0.743 32 H 0.182 0.818 33 H 0.155 0.845 34 H 0.218 0.782 35 H 0.190 0.810 36 H 0.176 0.824 37 H 0.168 0.832 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.816 -23.870 -0.665 24.044 hybrid contribution 0.014 1.498 -0.352 1.539 sum 2.829 -22.372 -1.017 22.573 Atomic orbital electron populations 1.69678 1.07071 1.29679 1.49269 1.26143 0.96515 1.02763 0.95758 0.84871 0.77977 0.76467 0.78714 1.19613 1.19721 1.19263 1.19741 0.92995 0.83476 1.50371 0.89400 1.41869 1.09599 1.04726 1.63345 1.20371 0.88131 0.85822 0.83641 1.90472 1.14972 1.87501 1.58034 1.20739 0.91737 0.84068 1.04000 1.45629 1.11587 1.04209 1.74132 1.21555 0.90252 0.84400 0.75973 1.90761 1.18355 1.85004 1.50760 1.21819 0.92457 0.78805 1.09947 1.43585 1.48465 1.18304 1.04981 1.22477 0.99664 0.92147 0.91894 1.22011 1.07806 1.01533 0.92147 1.19713 1.02475 0.95473 0.95319 1.20524 0.97196 0.99189 0.90843 1.20739 1.02373 0.96537 0.96856 1.20557 1.03274 0.97194 0.84460 1.98358 1.97439 1.94571 1.14082 1.19858 1.04927 1.00799 0.89696 1.18147 1.00426 0.94575 0.88158 0.91059 0.76797 0.89344 0.88843 0.74296 0.81770 0.84483 0.78156 0.80972 0.82421 0.83151 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.08 29.55 68.60 2.03 43.10 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.34 -18.15 9.68 84.04 0.81 -17.34 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.45 5.29 -306.98 -1.62 -29.07 16 10 C 0.43 19.09 7.85 87.66 0.69 19.78 16 11 O -0.62 -30.41 15.24 -3.06 -0.05 -30.46 16 12 C 0.12 4.21 6.15 85.63 0.53 4.74 16 13 N -0.70 -19.84 5.53 -466.77 -2.58 -22.42 16 14 C 0.49 13.02 7.90 87.66 0.69 13.71 16 15 O -0.57 -20.11 16.42 -3.03 -0.05 -20.16 16 16 C 0.09 1.59 6.48 85.63 0.55 2.15 16 17 N -0.47 -9.77 2.27 -519.98 -1.18 -10.95 16 18 C 0.06 1.06 11.28 82.99 0.94 2.00 16 19 C -0.21 -3.80 11.08 23.51 0.26 -3.54 16 20 C -0.12 -2.79 6.37 -20.20 -0.13 -2.91 16 21 C -0.06 -1.11 10.05 22.23 0.22 -0.89 16 22 C -0.15 -2.84 9.75 22.06 0.22 -2.63 16 23 C -0.03 -0.63 6.31 22.35 0.14 -0.48 16 24 Cl -0.07 -1.60 28.93 -2.72 -0.08 -1.67 16 25 C -0.13 -3.26 9.76 22.39 0.22 -3.04 16 26 C 0.09 2.29 6.80 39.03 0.27 2.55 16 27 H 0.28 13.81 8.31 -92.71 -0.77 13.03 16 28 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 29 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.42 11.07 7.44 -92.71 -0.69 10.38 16 32 H 0.16 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -71.55 356.21 2.34 -69.22 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.29 Total: 36.44 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.87 Total: 13.99 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -5.10 Total: -110.44 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.10 Total: -50.62 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.67 kcal Total: -71.55 2.34 -69.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343563894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.823 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds