Wall clock time and date at job start Tue Mar 31 2020 18:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00493 * 2 1 4 4 H 1.48501 * 109.46803 * 270.00016 * 3 2 1 5 5 H 1.48493 * 109.46868 * 29.99520 * 3 2 1 6 6 H 1.48498 * 109.47182 * 150.00010 * 3 2 1 7 7 C 1.38951 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00483 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00349 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.46727 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99987 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99751 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00250 * 179.97438 * 14 13 12 17 17 C 1.50704 * 109.47302 * 179.97438 * 16 14 13 18 18 C 1.34471 * 126.05429 * 124.71338 * 17 16 14 19 19 O 1.34898 * 107.33769 * 180.26376 * 18 17 16 20 20 C 1.34542 * 107.67610 * 0.02562 * 19 18 17 21 21 C 1.47018 * 125.76032 * 180.02562 * 20 19 18 22 22 C 1.36175 * 125.33353 * 359.97438 * 21 20 19 23 23 C 1.37728 * 114.44248 * 179.97438 * 22 21 20 24 24 C 1.33715 * 115.19467 * 359.97438 * 23 22 21 25 25 S 1.75828 * 109.95902 * 359.76956 * 24 23 22 26 26 N 1.31518 * 108.47954 * 359.97438 * 20 19 18 27 27 H 0.97002 * 119.99422 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99134 * 359.97438 * 9 7 2 29 29 H 1.08990 * 109.47088 * 59.99801 * 12 10 9 30 30 H 1.08997 * 109.46756 * 299.99551 * 12 10 9 31 31 H 0.97005 * 120.00447 * 359.97438 * 13 12 10 32 32 H 1.09004 * 109.46927 * 60.00138 * 16 14 13 33 33 H 1.08997 * 109.47294 * 299.99727 * 16 14 13 34 34 H 1.08002 * 126.33319 * 0.23457 * 18 17 16 35 35 H 1.08001 * 122.77940 * 359.97438 * 22 21 20 36 36 H 1.08001 * 122.40216 * 179.97438 * 23 22 21 37 37 H 1.07999 * 125.01800 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0010 13 7 2.1954 -5.9765 0.0017 14 6 1.7461 -7.2472 0.0019 15 8 0.5537 -7.4687 0.0019 16 6 2.7254 -8.3927 0.0021 17 6 1.9718 -9.6978 0.0029 18 6 2.1119 -10.6931 -0.8904 19 8 1.2555 -11.6737 -0.5372 20 6 0.6017 -11.2673 0.5662 21 6 -0.4256 -12.0331 1.2872 22 6 -0.8700 -13.2732 0.9426 23 6 -1.8395 -13.7835 1.7773 24 6 -2.1931 -12.9879 2.7922 25 16 -1.2671 -11.4943 2.7347 26 7 1.0376 -10.0699 0.8917 27 1 -0.4849 0.8401 -0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6179 -4.9208 -0.8896 30 1 0.6159 -4.9204 0.8903 31 1 3.1492 -5.7993 0.0021 32 1 3.3520 -8.3348 0.8921 33 1 3.3520 -8.3351 -0.8879 34 1 2.7852 -10.7051 -1.7347 35 1 -0.4935 -13.8121 0.0857 36 1 -2.2823 -14.7564 1.6232 37 1 -2.9352 -13.2287 3.5389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344153401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:34 Heat of formation + Delta-G solvation = -12.609596 kcal Electronic energy + Delta-G solvation = -24216.311373 eV Core-core repulsion = 20280.397528 eV Total energy + Delta-G solvation = -3935.913845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.42363 -39.50799 -38.11983 -37.99069 -35.23330 -34.39980 -33.63299 -32.58283 -31.38708 -30.29787 -28.29326 -26.85042 -24.99205 -24.43894 -22.33077 -21.97840 -20.24541 -19.61987 -19.21584 -18.38823 -18.09963 -17.30062 -16.85863 -16.55736 -15.93932 -15.63704 -15.47216 -15.33959 -14.55860 -14.40316 -14.28398 -13.96475 -13.72225 -13.44776 -13.24648 -13.10524 -12.93342 -12.63259 -12.40177 -12.17694 -11.77582 -11.63277 -11.27671 -11.12394 -11.10859 -10.65769 -10.46090 -10.31985 -9.97716 -9.63723 -9.62220 -8.84563 -8.76105 -8.63230 -8.38305 -8.10244 -6.51437 -3.93533 0.10629 1.01739 1.44420 1.63345 2.19288 2.63372 2.75261 2.86984 3.11695 3.21821 3.26692 3.43659 3.61047 3.74342 4.11477 4.47130 4.62775 4.68548 4.88780 4.91446 5.08123 5.13739 5.17089 5.20678 5.29174 5.45519 5.59953 5.66947 5.81983 5.93600 5.97187 5.98763 6.04886 6.08375 6.70395 7.45929 7.51366 7.83103 7.92124 8.44299 8.50355 9.04484 9.39427 9.87178 10.65442 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.001902 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.669666 B =14714.369769 C =15647.662973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.111 3.889 13 N -0.709 5.709 14 C 0.513 3.487 15 O -0.531 6.531 16 C -0.060 4.060 17 C 0.016 3.984 18 C -0.065 4.065 19 O -0.193 6.193 20 C 0.253 3.747 21 C -0.132 4.132 22 C -0.102 4.102 23 C -0.139 4.139 24 C -0.220 4.220 25 S 0.221 5.779 26 N -0.438 5.438 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.410 0.590 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.221 0.779 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -27.065 1.826 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.017 4.017 13 N -0.364 5.364 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.100 4.100 17 C -0.106 4.106 18 C -0.136 4.136 19 O -0.080 6.080 20 C 0.049 3.951 21 C -0.251 4.251 22 C -0.136 4.136 23 C -0.169 4.169 24 C -0.358 4.358 25 S 0.487 5.513 26 N -0.167 5.167 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.248 0.752 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.237 0.763 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.508 -25.381 3.257 25.634 hybrid contribution 0.445 -0.597 -1.624 1.787 sum -1.063 -25.978 1.633 26.051 Atomic orbital electron populations 1.69616 1.06018 1.28522 1.49292 1.25336 0.95677 0.99959 0.96807 0.85805 0.79222 0.80480 0.78472 1.20277 1.20800 1.19314 1.19731 0.93457 0.82004 1.48268 0.87665 1.41807 1.09502 1.04498 1.62600 1.19753 0.88285 0.85006 0.85536 1.90487 1.13713 1.86855 1.57425 1.20922 0.91883 0.85717 1.03183 1.45662 1.11518 1.04514 1.74731 1.20188 0.89598 0.83460 0.77019 1.90737 1.16520 1.84592 1.48819 1.19965 0.96767 0.87427 1.05882 1.21024 0.98175 0.97336 0.94071 1.24853 0.97995 0.87856 1.02915 1.84531 1.42716 1.42254 1.38463 1.22320 0.96248 0.90245 0.86307 1.21463 1.02709 0.98240 1.02701 1.20638 0.97900 0.93626 1.01460 1.19953 0.99447 1.01879 0.95610 1.26136 1.06360 0.98774 1.04484 1.84709 1.30847 1.15932 1.19848 1.70733 1.10383 1.08559 1.26989 0.91585 0.77028 0.89981 0.89892 0.75174 0.86876 0.86886 0.76278 0.83537 0.83643 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.55 -13.70 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.84 7.85 -10.99 -0.09 9.75 16 11 O -0.60 -15.18 15.24 5.55 0.08 -15.10 16 12 C 0.11 2.07 6.15 -5.19 -0.03 2.03 16 13 N -0.71 -11.62 5.53 -61.48 -0.34 -11.96 16 14 C 0.51 8.10 7.82 -10.99 -0.09 8.02 16 15 O -0.53 -10.48 15.57 5.55 0.09 -10.39 16 16 C -0.06 -0.67 6.26 -29.03 -0.18 -0.85 16 17 C 0.02 0.21 5.87 -82.88 -0.49 -0.28 16 18 C -0.06 -0.66 12.05 29.40 0.35 -0.31 16 19 O -0.19 -2.32 10.79 3.40 0.04 -2.28 16 20 C 0.25 3.44 8.08 -14.13 -0.11 3.33 16 21 C -0.13 -1.52 6.46 -36.77 -0.24 -1.76 16 22 C -0.10 -0.90 10.15 -40.51 -0.41 -1.32 16 23 C -0.14 -0.99 10.15 -41.35 -0.42 -1.41 16 24 C -0.22 -1.58 11.21 29.15 0.33 -1.25 16 25 S 0.22 2.23 23.30 -107.50 -2.50 -0.27 16 26 N -0.44 -6.71 10.71 -8.13 -0.09 -6.80 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.41 6.37 7.44 -40.82 -0.30 6.07 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.22 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -35.15 353.16 -6.89 -42.04 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.52 Total: 12.85 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.61 Total: 8.06 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.24 Total: -55.77 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: 0.21 Total: -27.77 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.50 Total: -0.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.15 -6.89 -42.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.432 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds