Wall clock time and date at job start Tue Mar 31 2020 18:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00493 * 2 1 4 4 H 1.48501 * 109.46803 * 270.00016 * 3 2 1 5 5 H 1.48493 * 109.46868 * 29.99520 * 3 2 1 6 6 H 1.48498 * 109.47182 * 150.00010 * 3 2 1 7 7 C 1.38951 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00483 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00349 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.46727 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99987 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99751 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00250 * 179.97438 * 14 13 12 17 17 C 1.50704 * 109.47302 * 179.97438 * 16 14 13 18 18 C 1.34471 * 126.05429 * 124.71338 * 17 16 14 19 19 O 1.34898 * 107.33769 * 180.26376 * 18 17 16 20 20 C 1.34542 * 107.67610 * 0.02562 * 19 18 17 21 21 C 1.47018 * 125.76032 * 180.02562 * 20 19 18 22 22 C 1.36175 * 125.33353 * 359.97438 * 21 20 19 23 23 C 1.37728 * 114.44248 * 179.97438 * 22 21 20 24 24 C 1.33715 * 115.19467 * 359.97438 * 23 22 21 25 25 S 1.75828 * 109.95902 * 359.76956 * 24 23 22 26 26 N 1.31518 * 108.47954 * 359.97438 * 20 19 18 27 27 H 0.97002 * 119.99422 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99134 * 359.97438 * 9 7 2 29 29 H 1.08990 * 109.47088 * 59.99801 * 12 10 9 30 30 H 1.08997 * 109.46756 * 299.99551 * 12 10 9 31 31 H 0.97005 * 120.00447 * 359.97438 * 13 12 10 32 32 H 1.09004 * 109.46927 * 60.00138 * 16 14 13 33 33 H 1.08997 * 109.47294 * 299.99727 * 16 14 13 34 34 H 1.08002 * 126.33319 * 0.23457 * 18 17 16 35 35 H 1.08001 * 122.77940 * 359.97438 * 22 21 20 36 36 H 1.08001 * 122.40216 * 179.97438 * 23 22 21 37 37 H 1.07999 * 125.01800 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0010 13 7 2.1954 -5.9765 0.0017 14 6 1.7461 -7.2472 0.0019 15 8 0.5537 -7.4687 0.0019 16 6 2.7254 -8.3927 0.0021 17 6 1.9718 -9.6978 0.0029 18 6 2.1119 -10.6931 -0.8904 19 8 1.2555 -11.6737 -0.5372 20 6 0.6017 -11.2673 0.5662 21 6 -0.4256 -12.0331 1.2872 22 6 -0.8700 -13.2732 0.9426 23 6 -1.8395 -13.7835 1.7773 24 6 -2.1931 -12.9879 2.7922 25 16 -1.2671 -11.4943 2.7347 26 7 1.0376 -10.0699 0.8917 27 1 -0.4849 0.8401 -0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6179 -4.9208 -0.8896 30 1 0.6159 -4.9204 0.8903 31 1 3.1492 -5.7993 0.0021 32 1 3.3520 -8.3348 0.8921 33 1 3.3520 -8.3351 -0.8879 34 1 2.7852 -10.7051 -1.7347 35 1 -0.4935 -13.8121 0.0857 36 1 -2.2823 -14.7564 1.6232 37 1 -2.9352 -13.2287 3.5389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344153401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:33 Heat of formation + Delta-G solvation = -40.866774 kcal Electronic energy + Delta-G solvation = -24217.536696 eV Core-core repulsion = 20280.397528 eV Total energy + Delta-G solvation = -3937.139168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.28710 -40.94673 -39.86245 -38.64269 -36.32365 -36.07429 -35.23931 -33.48143 -33.33992 -31.20451 -29.46632 -28.09997 -26.28779 -25.67655 -23.20925 -22.87406 -21.45405 -21.37844 -20.13498 -19.92030 -19.12510 -18.60905 -17.72946 -17.59292 -17.15864 -16.96997 -16.82667 -16.53979 -16.29411 -15.78715 -15.69054 -15.15445 -14.83155 -14.62940 -14.11417 -13.97989 -13.88434 -13.75177 -13.63253 -13.54201 -13.24655 -13.05809 -12.89297 -12.46298 -12.21614 -12.12952 -11.78454 -11.57447 -11.56227 -11.05891 -10.62011 -10.55325 -10.18770 -10.08520 -9.57400 -9.14522 -8.51688 -6.02172 -0.60708 0.30600 0.66297 0.99697 1.36059 1.42119 1.45091 1.55526 1.64112 1.84789 1.90296 1.91583 2.15235 2.34457 2.82791 3.12931 3.15355 3.62732 3.76378 4.04799 4.15466 4.23629 4.30402 4.41116 4.43961 4.45669 4.54340 4.57538 4.75933 4.83140 4.98888 5.12449 5.26917 5.29778 5.37978 5.41115 5.91007 6.45413 6.56757 6.65199 7.02404 7.22934 7.43634 7.92846 8.65277 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.001902 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.669666 B =14714.369769 C =15647.662973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.013 4.013 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.621 6.621 12 C 0.123 3.877 13 N -0.707 5.707 14 C 0.512 3.488 15 O -0.574 6.574 16 C -0.049 4.049 17 C -0.022 4.022 18 C -0.044 4.044 19 O -0.197 6.197 20 C 0.239 3.761 21 C -0.170 4.170 22 C -0.086 4.086 23 C -0.142 4.142 24 C -0.195 4.195 25 S 0.161 5.839 26 N -0.481 5.481 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.157 0.843 34 H 0.269 0.731 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -28.733 1.134 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.509 6.509 12 C -0.005 4.005 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.452 6.452 16 C -0.089 4.089 17 C -0.144 4.144 18 C -0.114 4.114 19 O -0.084 6.084 20 C 0.035 3.965 21 C -0.288 4.288 22 C -0.122 4.122 23 C -0.171 4.171 24 C -0.332 4.332 25 S 0.427 5.573 26 N -0.211 5.211 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.255 0.745 32 H 0.147 0.853 33 H 0.175 0.825 34 H 0.285 0.715 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.132 -27.068 2.562 27.213 hybrid contribution 0.289 -0.221 -1.413 1.459 sum -0.843 -27.289 1.148 27.327 Atomic orbital electron populations 1.69688 1.07077 1.29636 1.49326 1.26172 0.96561 1.02813 0.95797 0.84839 0.77893 0.76339 0.78739 1.19476 1.19736 1.19354 1.19759 0.93013 0.83490 1.50358 0.89401 1.41873 1.09577 1.04712 1.63471 1.20388 0.88134 0.85831 0.83514 1.90462 1.14987 1.87525 1.57960 1.20697 0.91858 0.84241 1.03705 1.45675 1.11324 1.04303 1.74937 1.21038 0.89893 0.83865 0.75289 1.90722 1.18747 1.85101 1.50667 1.20055 0.95638 0.84442 1.08735 1.21418 0.99091 0.98808 0.95036 1.25742 0.96792 0.86278 1.02625 1.84538 1.42939 1.42795 1.38096 1.22666 0.96792 0.90256 0.86797 1.21621 1.04013 0.99512 1.03652 1.21010 0.97133 0.92477 1.01537 1.20325 0.98805 1.03108 0.94853 1.26498 1.05479 0.96426 1.04806 1.84842 1.32677 1.19029 1.20780 1.70682 1.11951 1.09780 1.28704 0.91086 0.76822 0.89171 0.89611 0.74489 0.85284 0.82517 0.71526 0.82037 0.80190 0.78064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 1.00 41.90 29.55 68.60 2.03 43.93 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 8 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -28.52 5.29 -306.98 -1.62 -30.14 16 10 C 0.43 20.17 7.85 87.66 0.69 20.86 16 11 O -0.62 -31.80 15.24 -3.05 -0.05 -31.85 16 12 C 0.12 4.61 6.15 85.64 0.53 5.14 16 13 N -0.71 -22.78 5.53 -466.80 -2.58 -25.36 16 14 C 0.51 15.91 7.82 87.66 0.69 16.60 16 15 O -0.57 -23.00 15.57 -3.05 -0.05 -23.05 16 16 C -0.05 -1.01 6.26 29.10 0.18 -0.82 16 17 C -0.02 -0.55 5.87 41.33 0.24 -0.31 16 18 C -0.04 -0.80 12.05 66.96 0.81 0.00 16 19 O -0.20 -4.56 10.79 -10.76 -0.12 -4.68 16 20 C 0.24 6.62 8.08 87.04 0.70 7.32 16 21 C -0.17 -3.97 6.46 24.09 0.16 -3.81 16 22 C -0.09 -1.43 10.15 21.67 0.22 -1.21 16 23 C -0.14 -1.66 10.15 21.12 0.21 -1.44 16 24 C -0.20 -2.45 11.21 66.79 0.75 -1.70 16 25 S 0.16 3.39 23.30 -56.49 -1.32 2.08 16 26 N -0.48 -15.15 10.71 -293.48 -3.14 -18.29 16 27 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.40 19.60 7.90 -92.70 -0.73 18.87 16 29 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.42 12.55 7.44 -92.70 -0.69 11.86 16 32 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.16 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.27 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -79.15 353.16 -0.37 -79.52 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.26 Total: 34.23 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 6.46 Total: 22.58 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -7.06 Total: -122.77 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: -0.21 Total: -59.58 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.32 Total: 2.08 kcal Total: -79.15 -0.37 -79.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.657 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds