Wall clock time and date at job start Tue Mar 31 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34839 * 125.64132 * 2 1 4 4 C 1.40768 * 107.07401 * 179.72498 * 3 2 1 5 5 C 1.36235 * 106.72393 * 0.40413 * 4 3 2 6 6 C 1.47140 * 125.95777 * 179.85484 * 5 4 3 7 7 N 1.30123 * 125.32774 * 179.97438 * 6 5 4 8 8 C 1.32621 * 115.73556 * 180.19436 * 7 6 5 9 9 C 1.47299 * 122.41978 * 179.80003 * 8 7 6 10 10 O 1.21633 * 120.00203 * 179.71018 * 9 8 7 11 11 N 1.34777 * 119.99559 * 359.70709 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72407 * 11 9 8 13 13 C 1.50703 * 109.47138 * 180.28062 * 12 11 9 14 14 O 1.21293 * 120.00086 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00084 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00027 * 359.97438 * 16 15 13 18 18 C 1.38954 * 119.99944 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99793 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00192 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99746 * 20 18 16 22 22 H 1.48501 * 109.46721 * 209.99776 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99667 * 20 18 16 24 24 C 1.35170 * 115.16790 * 359.52769 * 8 7 6 25 25 S 1.71003 * 109.15826 * 0.25188 * 24 8 7 26 26 O 1.34240 * 125.64509 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47057 * 300.00304 * 1 2 3 29 29 H 1.08996 * 109.47040 * 60.00518 * 1 2 3 30 30 H 1.08008 * 126.46011 * 0.02562 * 3 2 1 31 31 H 1.08004 * 126.63575 * 180.29007 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 33 33 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 34 34 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 35 35 H 0.97002 * 120.00050 * 359.97438 * 15 13 12 36 36 H 0.96997 * 120.00181 * 180.02562 * 19 18 16 37 37 H 1.08001 * 125.42526 * 180.24262 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0958 0.0000 4 6 3.6271 0.6476 0.0065 5 6 3.5833 -0.7141 0.0009 6 6 4.7459 -1.6159 0.0015 7 7 4.6898 -2.9159 -0.0034 8 6 5.8585 -3.5428 0.0023 9 6 5.9667 -5.0118 0.0023 10 8 7.0618 -5.5410 0.0023 11 7 4.8520 -5.7695 0.0023 12 6 4.9596 -7.2305 -0.0039 13 6 3.5794 -7.8358 -0.0095 14 8 2.6021 -7.1174 -0.0080 15 7 3.4311 -9.1753 -0.0151 16 6 2.1756 -9.7260 -0.0197 17 1 1.3054 -9.0863 -0.0184 18 6 2.0227 -11.1071 -0.0260 19 7 0.8191 -11.6348 -0.0299 20 14 3.5277 -12.2135 -0.0276 21 1 3.9236 -12.5127 1.3720 22 1 3.2098 -13.4805 -0.7339 23 1 4.6462 -11.5266 -0.7224 24 6 6.9433 -2.7364 0.0023 25 16 6.4301 -1.1052 0.0018 26 8 2.2893 -1.0909 0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.9607 2.1236 0.0004 31 1 4.5140 1.2639 0.0126 32 1 3.9786 -5.3475 0.0019 33 1 5.5006 -7.5513 -0.8942 34 1 5.4968 -7.5591 0.8858 35 1 4.2127 -9.7499 -0.0159 36 1 0.7123 -12.5989 -0.0340 37 1 7.9708 -3.0693 0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344202054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:21 Heat of formation + Delta-G solvation = -33.528947 kcal Electronic energy + Delta-G solvation = -24571.408774 eV Core-core repulsion = 20634.587798 eV Total energy + Delta-G solvation = -3936.820976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.62413 -41.68852 -40.53173 -39.50802 -36.36583 -35.45802 -34.29524 -33.88176 -33.68390 -31.56762 -29.89862 -28.36088 -26.91062 -25.48678 -23.47686 -22.98338 -21.54511 -21.45772 -20.83027 -20.41561 -19.85041 -18.23143 -18.05494 -17.46355 -17.44695 -16.98502 -16.68040 -16.67993 -16.04314 -15.98480 -15.51484 -15.04053 -14.95903 -14.72201 -14.35581 -14.09194 -13.96697 -13.94253 -13.88129 -13.79955 -13.65656 -13.12466 -12.99363 -12.79339 -12.47818 -12.01982 -11.61954 -11.52177 -11.32813 -11.13180 -10.86150 -10.72409 -10.47618 -10.36673 -10.23412 -9.00681 -8.48442 -6.11189 -0.95741 -0.19056 0.25099 0.30861 1.08882 1.28965 1.31982 1.42490 1.63917 1.73986 1.91559 1.96300 2.18522 2.19425 2.67319 2.81251 3.07105 3.50529 3.83381 3.91059 3.95153 4.02127 4.08459 4.29191 4.33155 4.48341 4.58932 4.69511 4.72242 4.75277 4.95684 5.08250 5.14020 5.44839 5.52496 5.83760 5.97280 6.17444 6.43000 6.45079 6.74115 6.90368 7.24173 7.74121 8.68245 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.002620 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.146220 B =10683.620188 C =12751.303141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.003 4.003 3 C -0.211 4.211 4 C -0.144 4.144 5 C 0.003 3.997 6 C 0.080 3.920 7 N -0.467 5.467 8 C -0.012 4.012 9 C 0.592 3.408 10 O -0.559 6.559 11 N -0.699 5.699 12 C 0.116 3.884 13 C 0.441 3.559 14 O -0.616 6.616 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.060 0.940 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.962 3.038 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.232 1.232 24 C -0.216 4.216 25 S 0.342 5.658 26 O -0.188 6.188 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.190 0.810 31 H 0.188 0.812 32 H 0.415 0.585 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.393 0.607 36 H 0.282 0.718 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.831 28.500 0.064 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C -0.229 4.229 4 C -0.167 4.167 5 C -0.050 4.050 6 C -0.194 4.194 7 N -0.183 5.183 8 C -0.148 4.148 9 C 0.376 3.624 10 O -0.439 6.439 11 N -0.351 5.351 12 C -0.011 4.011 13 C 0.229 3.771 14 O -0.502 6.502 15 N -0.214 5.214 16 C -0.463 4.463 17 H 0.078 0.922 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.155 1.155 24 C -0.358 4.358 25 S 0.601 5.399 26 O -0.085 6.085 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.207 0.793 31 H 0.206 0.794 32 H 0.253 0.747 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 12.742 28.720 0.058 31.420 hybrid contribution -0.349 -2.167 -0.006 2.195 sum 12.393 26.553 0.053 29.302 Atomic orbital electron populations 1.20606 0.82760 1.04477 1.05864 1.23594 0.95728 0.83774 1.02466 1.21890 0.91310 1.00764 1.08986 1.22215 1.00524 0.90842 1.03098 1.19184 0.80456 0.91856 1.13471 1.24750 0.97239 0.90772 1.06605 1.67157 1.28349 1.07739 1.15049 1.19860 0.88158 0.95228 1.11588 1.17335 0.83662 0.85200 0.76153 1.90768 1.26809 1.73721 1.52568 1.45655 1.10351 1.06238 1.72849 1.21023 0.93750 0.80521 1.05828 1.20497 0.91289 0.82714 0.82624 1.90558 1.42323 1.60971 1.56372 1.41882 1.07704 1.05699 1.66138 1.19028 0.84361 0.91869 1.51054 0.92173 1.26111 1.01294 0.97875 0.95515 1.69784 1.24243 1.13424 1.49031 0.85409 0.77994 0.78316 0.80172 1.17930 1.19598 1.15509 1.27066 1.05858 0.98729 1.04197 1.83118 0.93724 1.00796 1.62259 1.84165 1.16303 1.36668 1.71315 0.91563 0.87064 0.87060 0.79271 0.79430 0.74720 0.87005 0.86891 0.77050 0.90806 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.41 71.23 0.74 -0.26 16 2 C 0.00 -0.06 7.31 24.90 0.18 0.12 16 3 C -0.21 -2.98 10.78 22.11 0.24 -2.74 16 4 C -0.14 -2.22 10.63 22.42 0.24 -1.98 16 5 C 0.00 0.07 7.24 24.14 0.17 0.24 16 6 C 0.08 1.97 7.46 87.28 0.65 2.63 16 7 N -0.47 -14.78 10.08 -180.11 -1.82 -16.60 16 8 C -0.01 -0.35 6.64 40.70 0.27 -0.08 16 9 C 0.59 20.30 7.79 86.63 0.68 20.97 16 10 O -0.56 -19.98 16.65 -4.14 -0.07 -20.05 16 11 N -0.70 -26.09 5.52 -470.20 -2.60 -28.69 16 12 C 0.12 4.18 6.15 85.63 0.53 4.71 16 13 C 0.44 20.81 7.85 87.66 0.69 21.50 16 14 O -0.62 -34.89 15.24 -3.07 -0.05 -34.94 16 15 N -0.57 -27.67 5.09 -306.98 -1.56 -29.23 16 16 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 17 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 18 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 19 N -0.93 -55.49 13.96 21.67 0.30 -55.19 16 20 Si 0.96 38.87 27.74 68.60 1.90 40.77 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 24 C -0.22 -4.35 10.56 67.11 0.71 -3.64 16 25 S 0.34 4.73 22.93 -56.49 -1.30 3.43 16 26 O -0.19 -5.30 10.67 -6.58 -0.07 -5.37 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.41 17.14 6.91 -92.71 -0.64 16.50 16 33 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 34 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.39 15.74 5.76 -92.71 -0.53 15.20 16 36 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.22 3.36 7.99 -2.91 -0.02 3.34 16 Total: -1.00 -84.53 350.29 1.09 -83.44 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.07 Total: 39.75 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.42 Total: 22.67 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.67 Total: -129.71 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.19 Total: -60.36 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.77 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.30 Total: 3.43 kcal Total: -84.53 1.09 -83.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344202054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.913 kcal (2) G-P(sol) polarization free energy of solvation -84.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds