Wall clock time and date at job start Tue Mar 31 2020 18:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99513 * 2 1 4 4 H 1.48498 * 109.46998 * 269.99683 * 3 2 1 5 5 H 1.48497 * 109.47122 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47023 * 150.00255 * 3 2 1 7 7 C 1.38945 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99880 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00155 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00115 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47082 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 12 17 17 C 1.50698 * 109.47166 * 179.97438 * 16 14 13 18 18 C 1.34223 * 126.50402 * 265.02840 * 17 16 14 19 19 N 1.36861 * 109.92991 * 179.97438 * 18 17 16 20 20 H 0.97005 * 125.07044 * 179.97438 * 19 18 17 21 21 C 1.37691 * 109.87162 * 359.97438 * 19 18 17 22 22 C 1.39119 * 133.49556 * 180.02562 * 21 19 18 23 23 C 1.37852 * 119.76823 * 179.24419 * 22 21 19 24 24 Cl 1.73605 * 119.67971 * 180.23029 * 23 22 21 25 25 C 1.38935 * 120.63724 * 0.62414 * 23 22 21 26 26 C 1.36609 * 120.51506 * 359.62374 * 25 23 22 27 27 C 1.39635 * 119.78374 * 359.97438 * 26 25 23 28 28 H 0.96993 * 120.00299 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99871 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.46606 * 60.00104 * 12 10 9 31 31 H 1.09006 * 109.47204 * 300.00561 * 12 10 9 32 32 H 0.97000 * 120.00740 * 359.72841 * 13 12 10 33 33 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 34 34 H 1.09002 * 109.47054 * 60.00213 * 16 14 13 35 35 H 1.08001 * 125.03452 * 359.97106 * 18 17 16 36 36 H 1.08011 * 120.11284 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.74229 * 179.60486 * 25 23 22 38 38 H 1.08003 * 120.10935 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 -0.0011 11 8 3.4475 -3.4209 -0.0020 12 6 5.5609 -2.3703 -0.0011 13 7 6.0492 -3.7515 -0.0017 14 6 7.3744 -3.9977 -0.0013 15 8 8.1624 -3.0758 -0.0054 16 6 7.8767 -5.4184 0.0043 17 6 9.3837 -5.4184 0.0030 18 6 10.1813 -5.5164 -1.0721 19 7 11.4933 -5.4803 -0.6845 20 1 12.2535 -5.5352 -1.2846 21 6 11.5737 -5.3544 0.6843 22 6 12.6371 -5.2715 1.5774 23 6 12.3888 -5.1318 2.9262 24 17 13.7175 -5.0225 4.0381 25 6 11.0854 -5.0859 3.4051 26 6 10.0271 -5.1708 2.5454 27 6 10.2562 -5.3043 1.1744 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3631 0.0004 30 1 5.9241 -1.8572 0.8895 31 1 5.9242 -1.8556 -0.8906 32 1 5.4190 -4.4888 0.0020 33 1 7.5139 -5.9286 0.8966 34 1 7.5131 -5.9359 -0.8834 35 1 9.8384 -5.6099 -2.0920 36 1 13.6538 -5.3045 1.2141 37 1 10.9075 -4.9826 4.4653 38 1 9.0166 -5.1348 2.9248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344229638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:34 Heat of formation + Delta-G solvation = -45.832188 kcal Electronic energy + Delta-G solvation = -24571.329115 eV Core-core repulsion = 20631.930924 eV Total energy + Delta-G solvation = -3939.398191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29735 -40.87827 -39.85196 -38.40278 -36.91094 -36.25806 -35.20469 -34.07278 -33.81069 -31.41429 -30.28694 -29.58435 -27.78148 -25.97254 -23.99181 -22.83080 -21.84280 -21.43194 -20.67803 -20.18095 -18.94943 -18.32940 -17.53728 -17.29050 -16.94713 -16.80170 -16.65116 -16.42769 -15.69560 -15.54864 -15.35259 -15.14465 -14.83448 -14.66277 -14.23990 -14.13605 -13.95479 -13.80602 -13.72275 -13.56743 -13.13277 -12.94260 -12.46508 -12.44005 -12.13604 -12.00316 -11.92950 -11.77623 -11.57100 -10.98846 -10.63809 -10.47694 -10.31943 -10.07356 -9.17830 -8.61665 -8.44724 -6.06382 0.01187 0.49881 1.11412 1.31385 1.34005 1.43736 1.58085 1.73711 1.83394 2.20199 2.23778 2.31576 2.78844 2.96288 3.11653 3.70920 3.84762 3.94210 4.00120 4.12228 4.20983 4.32353 4.43426 4.46671 4.52532 4.56334 4.68684 4.73099 4.83374 5.10030 5.25339 5.35290 5.45050 5.50710 5.58416 5.75173 5.89770 6.06073 6.49633 6.64208 6.68795 6.79872 7.27228 7.36001 7.79808 8.71658 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002051 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.103503 B =13650.984247 C =14338.013056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.580 5.580 10 C 0.446 3.554 11 O -0.613 6.613 12 C 0.119 3.881 13 N -0.713 5.713 14 C 0.514 3.486 15 O -0.575 6.575 16 C -0.057 4.057 17 C -0.179 4.179 18 C 0.082 3.918 19 N -0.580 5.580 20 H 0.433 0.567 21 C 0.089 3.911 22 C -0.120 4.120 23 C -0.029 4.029 24 Cl -0.069 7.069 25 C -0.144 4.144 26 C -0.070 4.070 27 C -0.109 4.109 28 H 0.281 0.719 29 H 0.391 0.609 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.206 0.794 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.679 -10.905 0.175 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.158 1.158 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.498 6.498 12 C -0.009 4.009 13 N -0.368 5.368 14 C 0.302 3.698 15 O -0.454 6.454 16 C -0.097 4.097 17 C -0.186 4.186 18 C -0.045 4.045 19 N -0.184 5.184 20 H 0.273 0.727 21 C -0.019 4.019 22 C -0.141 4.141 23 C -0.057 4.057 24 Cl -0.041 7.041 25 C -0.164 4.164 26 C -0.089 4.089 27 C -0.114 4.114 28 H 0.090 0.910 29 H 0.227 0.773 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.253 0.747 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.223 0.777 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 28.837 -10.832 0.151 30.805 hybrid contribution -0.164 0.859 0.008 0.874 sum 28.673 -9.974 0.159 30.358 Atomic orbital electron populations 1.69774 1.07978 1.29401 1.49417 1.26054 0.96434 1.02554 0.95850 0.85456 0.79527 0.77168 0.80037 1.18083 1.19898 1.15756 1.19030 0.80988 0.95244 1.50603 0.91739 1.41962 1.06145 1.07507 1.66426 1.20561 0.90157 0.83806 0.82134 1.90526 1.70815 1.32220 1.56279 1.20815 0.89292 0.86142 1.04668 1.45808 1.07773 1.08102 1.75149 1.21315 0.80762 0.92939 0.74818 1.90685 1.55980 1.47742 1.50981 1.19954 0.90744 0.91658 1.07296 1.19759 0.93770 1.13493 0.91574 1.22172 0.81728 1.00423 1.00164 1.41692 1.08371 1.63713 1.04621 0.72712 1.18068 0.94586 1.04455 0.84826 1.19921 0.98340 1.05667 0.90210 1.20489 0.88908 1.06044 0.90217 1.98357 1.46781 1.96712 1.62209 1.20658 0.90232 1.04439 1.01090 1.20379 0.99471 0.97893 0.91170 1.19427 0.92934 1.05077 0.93953 0.90961 0.77331 0.88514 0.88079 0.74748 0.86639 0.84875 0.77715 0.83472 0.83987 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 13.96 21.66 0.30 -53.82 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.96 37.99 27.74 68.60 1.90 39.90 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 7 C -0.33 -18.54 10.16 84.04 0.85 -17.68 16 8 H 0.06 4.28 7.39 -2.91 -0.02 4.25 16 9 N -0.58 -26.37 5.09 -306.98 -1.56 -27.93 16 10 C 0.45 18.96 7.85 87.66 0.69 19.65 16 11 O -0.61 -30.68 15.24 -3.08 -0.05 -30.73 16 12 C 0.12 3.76 6.15 85.63 0.53 4.28 16 13 N -0.71 -19.90 5.53 -466.78 -2.58 -22.48 16 14 C 0.51 13.25 7.82 87.65 0.69 13.93 16 15 O -0.57 -19.00 16.03 -3.04 -0.05 -19.05 16 16 C -0.06 -0.97 6.23 29.10 0.18 -0.79 16 17 C -0.18 -3.45 4.81 -18.62 -0.09 -3.54 16 18 C 0.08 1.17 11.73 82.99 0.97 2.14 16 19 N -0.58 -7.84 6.07 -187.60 -1.14 -8.98 16 20 H 0.43 2.84 8.96 -92.70 -0.83 2.01 16 21 C 0.09 1.71 7.28 39.03 0.28 2.00 16 22 C -0.12 -2.16 9.84 22.39 0.22 -1.94 16 23 C -0.03 -0.56 6.31 22.35 0.14 -0.42 16 24 Cl -0.07 -1.21 28.93 -2.72 -0.08 -1.28 16 25 C -0.14 -2.89 9.75 22.06 0.21 -2.68 16 26 C -0.07 -1.52 10.05 22.23 0.22 -1.30 16 27 C -0.11 -2.42 6.35 -20.19 -0.13 -2.55 16 28 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.39 14.99 5.76 -92.71 -0.53 14.46 16 30 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 32 H 0.41 11.37 7.44 -92.71 -0.69 10.68 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.13 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -77.98 351.83 1.04 -76.94 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.96 Total: 36.34 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.24 Total: 11.09 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.98 Total: -113.21 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.10 Total: -49.78 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.90 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -77.98 1.04 -76.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344229638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.112 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds