Wall clock time and date at job start Tue Mar 31 2020 19:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99441 * 2 1 4 4 H 1.48508 * 109.46668 * 239.99633 * 3 2 1 5 5 H 1.48496 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47305 * 120.00006 * 3 2 1 7 7 C 1.37874 * 120.00536 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00107 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99574 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00208 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47055 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47238 * 179.97438 * 14 13 11 16 16 N 1.30972 * 126.43496 * 89.99799 * 15 14 13 17 17 C 1.35223 * 105.58057 * 179.97438 * 16 15 14 18 18 C 1.48405 * 126.41418 * 180.02562 * 17 16 15 19 19 C 1.39338 * 120.10676 * 359.71957 * 18 17 16 20 20 C 1.37993 * 119.88984 * 179.77418 * 19 18 17 21 21 C 1.38445 * 120.10396 * 0.50491 * 20 19 18 22 22 Cl 1.73600 * 119.89053 * 179.76866 * 21 20 19 23 23 C 1.38447 * 120.21839 * 359.74619 * 21 20 19 24 24 C 1.37984 * 120.10579 * 359.97438 * 23 21 20 25 25 N 1.30768 * 107.16785 * 0.02562 * 17 16 15 26 26 O 1.21296 * 110.09652 * 359.74731 * 25 17 16 27 27 H 0.97006 * 120.00543 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99849 * 9 7 2 29 29 H 1.08996 * 109.46805 * 299.99830 * 9 7 2 30 30 H 0.97006 * 120.00096 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.47328 * 60.00147 * 13 11 10 32 32 H 1.09004 * 109.47043 * 299.99957 * 13 11 10 33 33 H 1.09001 * 109.46832 * 59.99966 * 14 13 11 34 34 H 1.09000 * 109.47611 * 300.00263 * 14 13 11 35 35 H 1.07997 * 120.05885 * 0.02562 * 19 18 17 36 36 H 1.07999 * 119.94268 * 180.23127 * 20 19 18 37 37 H 1.08000 * 119.95256 * 179.97438 * 23 21 20 38 38 H 1.08003 * 120.05818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6967 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1938 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5617 -5.1049 0.0020 13 6 2.7334 -6.0286 0.0016 14 6 1.9685 -7.3537 0.0028 15 6 2.9479 -8.4991 0.0028 16 7 3.4541 -9.0898 1.0564 17 6 4.2745 -10.0508 0.5750 18 6 5.0857 -10.9998 1.3774 19 6 5.0496 -10.9468 2.7693 20 6 5.8021 -11.8344 3.5110 21 6 6.6001 -12.7695 2.8743 22 17 7.5492 -13.8795 3.8128 23 6 6.6434 -12.8226 1.4915 24 6 5.8901 -11.9431 0.7412 25 7 4.2192 -9.9875 -0.7300 26 8 3.4595 -9.1061 -1.0726 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 3.1569 -3.4352 0.0009 31 1 3.3600 -5.9705 0.8917 32 1 3.3601 -5.9712 -0.8884 33 1 1.3416 -7.4120 -0.8870 34 1 1.3420 -7.4109 0.8929 35 1 4.4305 -10.2151 3.2669 36 1 5.7718 -11.7966 4.5899 37 1 7.2678 -13.5535 0.9992 38 1 5.9242 -11.9855 -0.3375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350941437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:35 Heat of formation + Delta-G solvation = 35.392196 kcal Electronic energy + Delta-G solvation = -23845.882554 eV Core-core repulsion = 19910.006516 eV Total energy + Delta-G solvation = -3935.876038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.81480 -39.82435 -39.05317 -37.09608 -36.14084 -34.77377 -34.18030 -32.42785 -31.95943 -31.60436 -30.58921 -27.68455 -25.56050 -25.10242 -23.66634 -22.80210 -22.34136 -21.19486 -19.76686 -18.45708 -18.23066 -17.36143 -17.14800 -16.29231 -16.00330 -15.63016 -15.47840 -15.23804 -14.63574 -14.37924 -14.18604 -14.16134 -14.08060 -13.56392 -12.90579 -12.83077 -12.68412 -12.51356 -12.31835 -12.13586 -11.97880 -11.84244 -11.64658 -11.45955 -11.27887 -11.19468 -11.03626 -10.89780 -10.46877 -10.36077 -9.64832 -9.46397 -9.22311 -9.02515 -8.78387 -7.97654 -6.20585 -4.27983 0.09343 0.72269 0.98702 1.56544 2.02222 2.51028 3.08887 3.16447 3.21733 3.23052 3.28128 3.29270 3.59090 3.99986 4.26323 4.31099 4.33255 4.58321 4.68448 4.72727 4.86973 4.95182 5.04371 5.13473 5.15725 5.37712 5.39203 5.48451 5.58606 5.62233 5.65389 5.80066 5.83856 5.87512 6.12210 7.23167 7.32750 7.45603 7.59876 7.83598 7.92014 8.52208 8.70425 8.98082 9.38678 10.89409 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.001618 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.481858 B =17297.060035 C =17976.181191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.502 3.498 12 O -0.556 6.556 13 C -0.140 4.140 14 C -0.014 4.014 15 C 0.202 3.798 16 N -0.474 5.474 17 C 0.206 3.794 18 C -0.013 4.013 19 C -0.062 4.062 20 C -0.112 4.112 21 C -0.020 4.020 22 Cl -0.064 7.064 23 C -0.113 4.113 24 C -0.072 4.072 25 N -0.376 5.376 26 O 0.085 5.915 27 H 0.267 0.733 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.392 0.608 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.712 -26.090 3.827 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.286 3.714 12 O -0.436 6.436 13 C -0.181 4.181 14 C -0.053 4.053 15 C -0.018 4.018 16 N -0.207 5.207 17 C -0.064 4.064 18 C -0.015 4.015 19 C -0.082 4.082 20 C -0.131 4.131 21 C -0.047 4.047 22 Cl -0.035 7.035 23 C -0.131 4.131 24 C -0.092 4.092 25 N -0.082 5.082 26 O 0.024 5.976 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.225 0.775 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.261 -26.770 3.800 30.115 hybrid contribution 0.935 1.063 0.010 1.415 sum 14.196 -25.707 3.810 29.612 Atomic orbital electron populations 1.69954 1.06104 1.27490 1.48647 1.24942 0.94916 0.99453 0.94617 0.86472 0.79424 0.82296 0.78704 1.20064 1.21044 1.20062 1.21186 0.93256 0.90464 1.53562 0.91918 1.19140 0.88275 0.81874 0.97890 1.46466 1.11318 1.06092 1.71817 1.20134 0.89125 0.84332 0.77798 1.90687 1.16722 1.84875 1.51270 1.21657 0.99087 0.92213 1.05192 1.20076 0.92429 0.84840 1.07945 1.28958 0.96130 0.96712 0.80035 1.72024 1.11706 1.08343 1.28645 1.23800 0.98168 0.96803 0.87654 1.17423 0.97260 0.94720 0.92134 1.21233 0.97247 0.97750 0.91959 1.21054 0.96358 0.94578 1.01093 1.21152 0.96854 0.94506 0.92209 1.98393 1.70911 1.61437 1.72807 1.20980 1.00407 1.00156 0.91570 1.21153 0.94115 0.93110 1.00837 1.74883 1.10874 1.07635 1.14805 1.85306 1.42336 1.34134 1.35853 0.92340 0.95363 0.95369 0.77536 0.88383 0.88505 0.86803 0.86042 0.83458 0.83950 0.84083 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.29 5.43 -5.19 -0.03 6.26 16 10 N -0.71 -13.70 5.55 -61.48 -0.34 -14.05 16 11 C 0.50 8.73 7.83 -10.99 -0.09 8.64 16 12 O -0.56 -11.83 15.98 5.56 0.09 -11.74 16 13 C -0.14 -1.60 5.68 -27.89 -0.16 -1.76 16 14 C -0.01 -0.14 5.13 -27.88 -0.14 -0.29 16 15 C 0.20 2.23 7.75 -12.99 -0.10 2.13 16 16 N -0.47 -5.70 11.26 -9.88 -0.11 -5.81 16 17 C 0.21 2.42 7.80 -156.11 -1.22 1.20 16 18 C -0.01 -0.13 5.88 -104.89 -0.62 -0.75 16 19 C -0.06 -0.52 9.70 -39.26 -0.38 -0.90 16 20 C -0.11 -0.81 9.81 -39.59 -0.39 -1.19 16 21 C -0.02 -0.15 6.32 -39.43 -0.25 -0.39 16 22 Cl -0.06 -0.44 28.95 -51.86 -1.50 -1.94 16 23 C -0.11 -0.79 9.81 -39.60 -0.39 -1.18 16 24 C -0.07 -0.59 9.69 -39.26 -0.38 -0.97 16 25 N -0.38 -4.58 11.86 30.97 0.37 -4.21 16 26 O 0.08 0.98 11.29 18.05 0.20 1.18 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 6.42 8.32 -40.82 -0.34 6.08 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.11 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.12 1.32 8.10 -51.93 -0.42 0.90 16 35 H 0.15 1.19 7.88 -52.49 -0.41 0.77 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 1.06 7.87 -52.48 -0.41 0.65 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -31.73 359.46 -8.79 -40.52 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.08 Total: 2.20 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.56 Total: -2.22 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.65 Total: -48.77 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.29 Total: -10.55 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.73 -8.79 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350941437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.911 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds