Wall clock time and date at job start Tue Mar 31 2020 19:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99441 * 2 1 4 4 H 1.48508 * 109.46668 * 239.99633 * 3 2 1 5 5 H 1.48496 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47305 * 120.00006 * 3 2 1 7 7 C 1.37874 * 120.00536 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00107 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99574 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00208 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47055 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47238 * 179.97438 * 14 13 11 16 16 N 1.30972 * 126.43496 * 89.99799 * 15 14 13 17 17 C 1.35223 * 105.58057 * 179.97438 * 16 15 14 18 18 C 1.48405 * 126.41418 * 180.02562 * 17 16 15 19 19 C 1.39338 * 120.10676 * 359.71957 * 18 17 16 20 20 C 1.37993 * 119.88984 * 179.77418 * 19 18 17 21 21 C 1.38445 * 120.10396 * 0.50491 * 20 19 18 22 22 Cl 1.73600 * 119.89053 * 179.76866 * 21 20 19 23 23 C 1.38447 * 120.21839 * 359.74619 * 21 20 19 24 24 C 1.37984 * 120.10579 * 359.97438 * 23 21 20 25 25 N 1.30768 * 107.16785 * 0.02562 * 17 16 15 26 26 O 1.21296 * 110.09652 * 359.74731 * 25 17 16 27 27 H 0.97006 * 120.00543 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99849 * 9 7 2 29 29 H 1.08996 * 109.46805 * 299.99830 * 9 7 2 30 30 H 0.97006 * 120.00096 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.47328 * 60.00147 * 13 11 10 32 32 H 1.09004 * 109.47043 * 299.99957 * 13 11 10 33 33 H 1.09001 * 109.46832 * 59.99966 * 14 13 11 34 34 H 1.09000 * 109.47611 * 300.00263 * 14 13 11 35 35 H 1.07997 * 120.05885 * 0.02562 * 19 18 17 36 36 H 1.07999 * 119.94268 * 180.23127 * 20 19 18 37 37 H 1.08000 * 119.95256 * 179.97438 * 23 21 20 38 38 H 1.08003 * 120.05818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6967 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1938 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5617 -5.1049 0.0020 13 6 2.7334 -6.0286 0.0016 14 6 1.9685 -7.3537 0.0028 15 6 2.9479 -8.4991 0.0028 16 7 3.4541 -9.0898 1.0564 17 6 4.2745 -10.0508 0.5750 18 6 5.0857 -10.9998 1.3774 19 6 5.0496 -10.9468 2.7693 20 6 5.8021 -11.8344 3.5110 21 6 6.6001 -12.7695 2.8743 22 17 7.5492 -13.8795 3.8128 23 6 6.6434 -12.8226 1.4915 24 6 5.8901 -11.9431 0.7412 25 7 4.2192 -9.9875 -0.7300 26 8 3.4595 -9.1061 -1.0726 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 3.1569 -3.4352 0.0009 31 1 3.3600 -5.9705 0.8917 32 1 3.3601 -5.9712 -0.8884 33 1 1.3416 -7.4120 -0.8870 34 1 1.3420 -7.4109 0.8929 35 1 4.4305 -10.2151 3.2669 36 1 5.7718 -11.7966 4.5899 37 1 7.2678 -13.5535 0.9992 38 1 5.9242 -11.9855 -0.3375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350941437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:34 Heat of formation + Delta-G solvation = 14.538179 kcal Electronic energy + Delta-G solvation = -23846.786852 eV Core-core repulsion = 19910.006516 eV Total energy + Delta-G solvation = -3936.780336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.69476 -40.55439 -40.42196 -37.68981 -36.99566 -36.20459 -35.49717 -34.31986 -32.82445 -32.23305 -31.38091 -29.47418 -26.81008 -25.89338 -24.69867 -23.95274 -23.41923 -22.02727 -21.27122 -19.41567 -19.01465 -18.79646 -18.00816 -17.54158 -17.02681 -16.94741 -16.69505 -16.38365 -16.02692 -15.45862 -15.18488 -14.85098 -14.76649 -14.64275 -14.33849 -13.98400 -13.89792 -13.54941 -13.47625 -13.37441 -13.00730 -12.89975 -12.72129 -12.66820 -12.36552 -12.27890 -12.21825 -12.14467 -11.86896 -11.48125 -11.32007 -10.76736 -10.75764 -10.21985 -9.78352 -9.68795 -8.26618 -6.42574 -0.60254 0.14575 0.15567 1.00203 1.21876 1.45286 1.48439 1.56517 1.61907 1.79491 2.27415 2.37067 2.53162 2.64615 2.83591 3.08529 3.61649 3.70925 3.77362 3.82912 4.05042 4.09252 4.13157 4.26635 4.41132 4.49892 4.57630 4.64016 4.83937 4.85259 4.96581 5.04812 5.07983 5.16790 5.25146 5.29940 5.51852 5.53942 5.72004 5.88554 6.68623 6.92816 6.97299 7.26596 7.51719 8.84936 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.001618 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.481858 B =17297.060035 C =17976.181191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.264 3.736 10 N -0.708 5.708 11 C 0.502 3.498 12 O -0.597 6.597 13 C -0.122 4.122 14 C -0.008 4.008 15 C 0.210 3.790 16 N -0.487 5.487 17 C 0.203 3.797 18 C -0.037 4.037 19 C -0.065 4.065 20 C -0.110 4.110 21 C -0.023 4.023 22 Cl -0.059 7.059 23 C -0.109 4.109 24 C -0.074 4.074 25 N -0.390 5.390 26 O 0.083 5.917 27 H 0.268 0.732 28 H -0.009 1.009 29 H -0.010 1.010 30 H 0.409 0.591 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.324 -26.728 4.145 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.141 3.859 10 N -0.357 5.357 11 C 0.289 3.711 12 O -0.480 6.480 13 C -0.162 4.162 14 C -0.047 4.047 15 C -0.010 4.010 16 N -0.220 5.220 17 C -0.066 4.066 18 C -0.039 4.039 19 C -0.085 4.085 20 C -0.129 4.129 21 C -0.050 4.050 22 Cl -0.029 7.029 23 C -0.127 4.127 24 C -0.094 4.094 25 N -0.097 5.097 26 O 0.023 5.977 27 H 0.077 0.923 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.245 0.755 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.165 0.835 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.918 -27.438 4.114 31.987 hybrid contribution 0.114 1.132 -0.050 1.139 sum 16.032 -26.306 4.064 31.073 Atomic orbital electron populations 1.70116 1.08156 1.28539 1.49974 1.26007 0.95734 1.03736 0.93971 0.85263 0.77946 0.76939 0.79407 1.18769 1.21235 1.18802 1.21618 0.94333 0.90761 1.52844 0.89874 1.18554 0.88719 0.84220 0.94372 1.46199 1.11297 1.05647 1.72595 1.21098 0.89551 0.84801 0.75646 1.90672 1.19188 1.85465 1.52625 1.21554 0.97624 0.89457 1.07593 1.19999 0.92192 0.84262 1.08225 1.28878 0.95747 0.96522 0.79869 1.72031 1.12149 1.08802 1.29056 1.24166 0.97957 0.96808 0.87701 1.17609 0.98219 0.95385 0.92647 1.21279 0.97556 0.98135 0.91580 1.21244 0.95672 0.93949 1.01988 1.21293 0.96720 0.94482 0.92511 1.98399 1.70702 1.61181 1.72663 1.21195 1.00016 0.99992 0.91526 1.21233 0.94013 0.93000 1.01157 1.74872 1.11503 1.08155 1.15139 1.85290 1.42393 1.34164 1.35866 0.92313 0.99087 0.99198 0.75504 0.86290 0.85576 0.86147 0.86420 0.83451 0.82158 0.82061 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.44 0.28 -54.53 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 41.38 29.54 68.60 2.03 43.40 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.56 -29.33 9.28 25.60 0.24 -29.09 16 8 H 0.08 3.93 7.60 -2.91 -0.02 3.90 16 9 C 0.26 13.81 5.43 85.63 0.46 14.27 16 10 N -0.71 -27.22 5.55 -466.80 -2.59 -29.80 16 11 C 0.50 17.24 7.83 87.66 0.69 17.92 16 12 O -0.60 -25.97 15.98 -3.03 -0.05 -26.02 16 13 C -0.12 -2.52 5.68 29.85 0.17 -2.35 16 14 C -0.01 -0.15 5.13 29.85 0.15 0.00 16 15 C 0.21 4.36 7.75 88.36 0.68 5.04 16 16 N -0.49 -11.19 11.26 -302.49 -3.41 -14.60 16 17 C 0.20 4.61 7.80 137.29 1.07 5.68 16 18 C -0.04 -0.69 5.88 -20.04 -0.12 -0.80 16 19 C -0.07 -1.04 9.70 22.48 0.22 -0.82 16 20 C -0.11 -1.40 9.81 22.26 0.22 -1.18 16 21 C -0.02 -0.29 6.32 22.37 0.14 -0.15 16 22 Cl -0.06 -0.69 28.95 -2.72 -0.08 -0.77 16 23 C -0.11 -1.33 9.81 22.26 0.22 -1.11 16 24 C -0.07 -1.13 9.69 22.48 0.22 -0.91 16 25 N -0.39 -9.13 11.86 -59.11 -0.70 -9.83 16 26 O 0.08 1.81 11.29 74.66 0.84 2.65 16 27 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.41 12.78 8.32 -92.70 -0.77 12.00 16 31 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.12 2.25 8.10 -2.39 -0.02 2.23 16 34 H 0.12 2.47 8.10 -2.39 -0.02 2.45 16 35 H 0.15 2.26 7.88 -2.91 -0.02 2.24 16 36 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.14 2.03 7.87 -2.91 -0.02 2.01 16 Total: -1.00 -70.41 359.46 1.50 -68.91 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.35 Total: 13.33 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.83 Total: 7.27 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -6.41 Total: -108.77 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.79 Total: -23.37 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -70.41 1.50 -68.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350941437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.445 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds