Wall clock time and date at job start Tue Mar 31 2020 18:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00467 * 3 2 1 5 5 H 1.48504 * 109.46592 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47363 * 119.99650 * 3 2 1 7 7 C 1.38955 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99725 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99877 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46995 * 179.97438 * 12 10 9 14 14 S 1.65597 * 119.99926 * 165.27893 * 13 12 10 15 15 O 1.42096 * 106.40195 * 178.26439 * 14 13 12 16 16 O 1.42108 * 106.40105 * 311.18495 * 14 13 12 17 17 C 1.76199 * 107.22117 * 64.72196 * 14 13 12 18 18 C 1.39366 * 119.57011 * 269.73248 * 17 14 13 19 19 C 1.36072 * 121.06976 * 179.68428 * 18 17 14 20 20 C 1.40596 * 119.74738 * 0.60190 * 19 18 17 21 21 N 1.33687 * 121.08160 * 179.67858 * 20 19 18 22 22 C 1.31079 * 121.32209 * 179.97438 * 21 20 19 23 23 C 1.39338 * 121.75087 * 0.02562 * 22 21 20 24 24 C 1.36580 * 119.93234 * 359.97438 * 23 22 21 25 25 C 1.40766 * 118.14915 * 0.02562 * 24 23 22 26 26 C 1.36141 * 119.56969 * 90.00049 * 17 14 13 27 27 H 0.97004 * 119.99852 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00243 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.46980 * 59.99824 * 12 10 9 30 30 H 1.08995 * 109.47206 * 300.00007 * 12 10 9 31 31 H 0.97001 * 119.99790 * 344.99681 * 13 12 10 32 32 H 1.08000 * 119.46237 * 359.97438 * 18 17 14 33 33 H 1.07996 * 120.12555 * 180.27812 * 19 18 17 34 34 H 1.08002 * 119.12666 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.03157 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.92399 * 179.97438 * 24 23 22 37 37 H 1.08007 * 120.18595 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1957 -5.9765 0.0027 14 16 1.6795 -7.5070 0.3678 15 8 2.8140 -8.3534 0.2434 16 8 0.9174 -7.3991 1.5624 17 6 0.5544 -7.9938 -0.8978 18 6 -0.8053 -7.7260 -0.7495 19 6 -1.7001 -8.0827 -1.7106 20 6 -1.2539 -8.7436 -2.8685 21 7 -2.1106 -9.1118 -3.8265 22 6 -1.6997 -9.7276 -4.9082 23 6 -0.3550 -10.0294 -5.1141 24 6 0.5732 -9.6811 -4.1747 25 6 0.1280 -9.0199 -3.0145 26 6 1.0238 -8.6315 -2.0052 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6174 -4.9213 -0.8881 30 1 0.6167 -4.9201 0.8919 31 1 3.1276 -5.8179 -0.2149 32 1 -1.1537 -7.2231 0.1404 33 1 -2.7498 -7.8637 -1.5819 34 1 -2.4225 -10.0087 -5.6598 35 1 -0.0472 -10.5381 -6.0156 36 1 1.6195 -9.9075 -4.3176 37 1 2.0791 -8.8379 -2.1066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352534949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:02 Heat of formation + Delta-G solvation = -51.798187 kcal Electronic energy + Delta-G solvation = -25384.613387 eV Core-core repulsion = 21447.000197 eV Total energy + Delta-G solvation = -3937.613190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18277 -38.47057 -37.52223 -37.24952 -35.86223 -34.70420 -33.93924 -33.74161 -31.37844 -31.09006 -30.51471 -27.20380 -25.01001 -24.36625 -24.12487 -22.59236 -19.96658 -19.67599 -18.68063 -18.16152 -18.08770 -17.47333 -17.33206 -16.10490 -15.92700 -15.54791 -15.03284 -14.84932 -14.78451 -14.61060 -14.39337 -14.33796 -13.86492 -13.62809 -13.50264 -12.92227 -12.55455 -12.48441 -12.28571 -12.12147 -12.03574 -11.94395 -11.86553 -11.56883 -11.13593 -11.07084 -11.00240 -10.51223 -10.31461 -9.92391 -9.64431 -9.47460 -9.37363 -8.77747 -8.62857 -8.11110 -6.52581 -3.94373 -0.21579 0.26618 0.41159 1.53022 2.27888 3.03197 3.13339 3.21233 3.25433 3.59004 3.71105 3.77519 3.87213 4.06938 4.10272 4.21945 4.37648 4.43182 4.64069 4.72618 4.79334 4.88182 5.06160 5.14379 5.31958 5.38342 5.42218 5.53435 5.58468 5.72068 5.76509 5.80552 5.85074 6.08978 6.23840 6.39650 7.18861 7.45269 7.46487 7.91925 8.44688 9.04190 9.37908 9.86443 10.64292 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.002941 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.468297 B = 9516.872064 C =10551.658765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.434 3.566 11 O -0.590 6.590 12 C 0.104 3.896 13 N -1.095 6.095 14 S 2.700 3.300 15 O -0.959 6.959 16 O -0.952 6.952 17 C -0.673 4.673 18 C -0.026 4.026 19 C -0.107 4.107 20 C 0.165 3.835 21 N -0.482 5.482 22 C 0.150 3.850 23 C -0.186 4.186 24 C -0.038 4.038 25 C -0.132 4.132 26 C 0.030 3.970 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.428 0.572 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -19.185 -8.913 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.218 3.782 11 O -0.475 6.475 12 C -0.026 4.026 13 N -0.860 5.860 14 S 2.788 3.212 15 O -0.950 6.950 16 O -0.942 6.942 17 C -0.758 4.758 18 C -0.047 4.047 19 C -0.126 4.126 20 C 0.043 3.957 21 N -0.190 5.190 22 C -0.022 4.022 23 C -0.206 4.206 24 C -0.064 4.064 25 C -0.135 4.135 26 C 0.010 3.990 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.268 0.732 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.604 -19.278 -7.940 21.351 hybrid contribution 0.549 0.798 -1.054 1.431 sum -4.056 -18.480 -8.994 20.949 Atomic orbital electron populations 1.69596 1.05990 1.28620 1.49395 1.25306 0.95663 0.99889 0.96788 0.85880 0.78788 0.80172 0.79172 1.19810 1.20872 1.19757 1.19686 0.93460 0.82013 1.48316 0.87721 1.41805 1.09409 1.04483 1.62967 1.19572 0.88330 0.84639 0.85613 1.90506 1.13652 1.86567 1.56795 1.20982 0.91386 0.87312 1.02916 1.55085 1.20137 1.22436 1.88295 1.01760 0.73244 0.72270 0.73950 1.93587 1.49342 1.65114 1.86912 1.93595 1.72551 1.85960 1.42066 1.30912 1.11665 1.15145 1.18093 1.20606 0.90460 0.94886 0.98721 1.20871 1.01009 0.98801 0.91901 1.19080 0.88724 0.94217 0.93639 1.68164 1.37498 1.11617 1.01705 1.23146 0.94577 0.90696 0.93814 1.21942 0.94450 1.03091 1.01148 1.21617 1.00827 0.92494 0.91431 1.18929 0.94835 1.02958 0.96767 1.20942 0.99933 0.88619 0.89533 0.91551 0.77093 0.90187 0.88521 0.73239 0.83228 0.83686 0.81979 0.84035 0.83697 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.44 13.05 55.50 0.72 -22.72 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.25 5.29 -10.96 -0.06 -13.31 16 10 C 0.43 9.64 7.85 -10.98 -0.09 9.55 16 11 O -0.59 -14.98 15.30 5.55 0.09 -14.90 16 12 C 0.10 1.69 6.70 -5.19 -0.03 1.66 16 13 N -1.09 -16.47 5.93 -11.66 -0.07 -16.54 16 14 S 2.70 37.03 5.72 -107.50 -0.62 36.42 16 15 O -0.96 -14.71 17.21 -57.17 -0.98 -15.69 16 16 O -0.95 -15.18 16.71 -57.17 -0.96 -16.13 16 17 C -0.67 -8.05 5.91 -39.92 -0.24 -8.28 16 18 C -0.03 -0.30 9.42 -39.94 -0.38 -0.67 16 19 C -0.11 -1.20 9.98 -39.47 -0.39 -1.59 16 20 C 0.16 1.96 6.60 -84.86 -0.56 1.40 16 21 N -0.48 -5.41 10.34 -10.97 -0.11 -5.52 16 22 C 0.15 1.19 11.15 -17.46 -0.19 1.00 16 23 C -0.19 -1.24 10.03 -39.77 -0.40 -1.64 16 24 C -0.04 -0.30 9.90 -39.23 -0.39 -0.69 16 25 C -0.13 -1.43 5.74 -106.81 -0.61 -2.04 16 26 C 0.03 0.33 9.22 -39.51 -0.36 -0.04 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.40 8.96 7.90 -40.82 -0.32 8.64 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.42 7.76 -51.93 -0.40 1.02 16 31 H 0.43 6.71 7.70 -34.47 -0.27 6.44 16 32 H 0.15 1.48 7.56 -52.49 -0.40 1.08 16 33 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.15 1.34 7.55 -52.48 -0.40 0.95 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -35.04 342.43 -9.15 -44.18 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -3.41 Total: 12.80 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.89 Total: -9.08 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.48 Total: -58.09 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -1.85 Total: -46.72 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 37.03 SS G_CDS: -0.62 Total: 36.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.04 -9.15 -44.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352534949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.616 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds