Wall clock time and date at job start Tue Mar 31 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00467 * 3 2 1 5 5 H 1.48504 * 109.46592 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47363 * 119.99650 * 3 2 1 7 7 C 1.38955 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99725 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99877 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46995 * 179.97438 * 12 10 9 14 14 S 1.65597 * 119.99926 * 165.27893 * 13 12 10 15 15 O 1.42096 * 106.40195 * 178.26439 * 14 13 12 16 16 O 1.42108 * 106.40105 * 311.18495 * 14 13 12 17 17 C 1.76199 * 107.22117 * 64.72196 * 14 13 12 18 18 C 1.39366 * 119.57011 * 269.73248 * 17 14 13 19 19 C 1.36072 * 121.06976 * 179.68428 * 18 17 14 20 20 C 1.40596 * 119.74738 * 0.60190 * 19 18 17 21 21 N 1.33687 * 121.08160 * 179.67858 * 20 19 18 22 22 C 1.31079 * 121.32209 * 179.97438 * 21 20 19 23 23 C 1.39338 * 121.75087 * 0.02562 * 22 21 20 24 24 C 1.36580 * 119.93234 * 359.97438 * 23 22 21 25 25 C 1.40766 * 118.14915 * 0.02562 * 24 23 22 26 26 C 1.36141 * 119.56969 * 90.00049 * 17 14 13 27 27 H 0.97004 * 119.99852 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00243 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.46980 * 59.99824 * 12 10 9 30 30 H 1.08995 * 109.47206 * 300.00007 * 12 10 9 31 31 H 0.97001 * 119.99790 * 344.99681 * 13 12 10 32 32 H 1.08000 * 119.46237 * 359.97438 * 18 17 14 33 33 H 1.07996 * 120.12555 * 180.27812 * 19 18 17 34 34 H 1.08002 * 119.12666 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.03157 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.92399 * 179.97438 * 24 23 22 37 37 H 1.08007 * 120.18595 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1957 -5.9765 0.0027 14 16 1.6795 -7.5070 0.3678 15 8 2.8140 -8.3534 0.2434 16 8 0.9174 -7.3991 1.5624 17 6 0.5544 -7.9938 -0.8978 18 6 -0.8053 -7.7260 -0.7495 19 6 -1.7001 -8.0827 -1.7106 20 6 -1.2539 -8.7436 -2.8685 21 7 -2.1106 -9.1118 -3.8265 22 6 -1.6997 -9.7276 -4.9082 23 6 -0.3550 -10.0294 -5.1141 24 6 0.5732 -9.6811 -4.1747 25 6 0.1280 -9.0199 -3.0145 26 6 1.0238 -8.6315 -2.0052 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6174 -4.9213 -0.8881 30 1 0.6167 -4.9201 0.8919 31 1 3.1276 -5.8179 -0.2149 32 1 -1.1537 -7.2231 0.1404 33 1 -2.7498 -7.8637 -1.5819 34 1 -2.4225 -10.0087 -5.6598 35 1 -0.0472 -10.5381 -6.0156 36 1 1.6195 -9.9075 -4.3176 37 1 2.0791 -8.8379 -2.1066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352534949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:01 Heat of formation + Delta-G solvation = -79.445752 kcal Electronic energy + Delta-G solvation = -25385.812276 eV Core-core repulsion = 21447.000197 eV Total energy + Delta-G solvation = -3938.812078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88798 -40.25796 -38.44139 -38.26398 -37.04812 -36.33482 -35.38809 -34.62384 -33.32126 -31.82637 -31.26115 -28.77475 -26.17286 -25.72229 -24.86112 -23.33722 -21.41662 -20.94872 -20.05598 -19.65709 -18.90141 -18.73957 -18.05107 -17.32985 -17.24071 -16.77179 -16.44489 -16.10984 -15.99162 -15.62876 -15.52670 -15.36574 -15.18388 -14.61106 -14.20163 -14.10342 -13.93176 -13.63516 -13.57749 -13.31337 -13.24916 -13.16550 -13.13945 -12.90528 -12.66788 -12.44163 -12.12545 -12.04557 -11.68565 -11.53941 -10.74292 -10.58718 -10.43646 -10.14195 -10.05746 -9.52391 -8.48507 -5.97797 -0.98939 -0.69614 -0.42126 0.80429 1.39542 1.43682 1.50749 1.54240 1.95211 1.96734 2.30328 2.60641 2.94931 3.05265 3.18700 3.19892 3.27897 3.45486 3.68145 3.85870 3.93483 3.97378 4.02426 4.20452 4.39338 4.43397 4.44017 4.59083 4.70724 4.80462 4.80564 4.90092 5.03646 5.14017 5.40632 5.42969 5.68312 5.88265 5.99981 6.53498 6.79563 7.07892 7.48976 8.01467 8.68044 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.002941 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.468297 B = 9516.872064 C =10551.658765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.562 5.562 10 C 0.434 3.566 11 O -0.625 6.625 12 C 0.112 3.888 13 N -1.100 6.100 14 S 2.722 3.278 15 O -0.976 6.976 16 O -0.977 6.977 17 C -0.680 4.680 18 C -0.037 4.037 19 C -0.116 4.116 20 C 0.143 3.857 21 N -0.515 5.515 22 C 0.150 3.850 23 C -0.176 4.176 24 C -0.044 4.044 25 C -0.150 4.150 26 C 0.030 3.970 27 H 0.279 0.721 28 H 0.401 0.599 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.426 0.574 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.196 0.804 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 -20.259 -10.807 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.199 5.199 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.018 4.018 13 N -0.863 5.863 14 S 2.813 3.187 15 O -0.967 6.967 16 O -0.967 6.967 17 C -0.768 4.768 18 C -0.057 4.057 19 C -0.136 4.136 20 C 0.022 3.978 21 N -0.224 5.224 22 C -0.022 4.022 23 C -0.195 4.195 24 C -0.070 4.070 25 C -0.154 4.154 26 C 0.010 3.990 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.264 0.736 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.212 0.788 35 H 0.199 0.801 36 H 0.191 0.809 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.024 -20.355 -9.809 23.147 hybrid contribution 0.637 0.954 -0.631 1.310 sum -4.387 -19.401 -10.440 22.464 Atomic orbital electron populations 1.69653 1.06820 1.29585 1.49426 1.26041 0.96520 1.02426 0.95931 0.84993 0.77787 0.76618 0.78985 1.19576 1.19583 1.19765 1.19670 0.92900 0.83770 1.50406 0.89893 1.41854 1.09617 1.04538 1.63844 1.20529 0.88230 0.86002 0.83207 1.90480 1.15558 1.87507 1.57669 1.20984 0.91131 0.84199 1.05452 1.55106 1.19916 1.22636 1.88622 1.00886 0.72747 0.71381 0.73663 1.93555 1.50566 1.65260 1.87308 1.93556 1.72917 1.86122 1.44070 1.30490 1.11280 1.17002 1.18041 1.20732 0.90319 0.95426 0.99253 1.21048 1.01511 0.98985 0.92037 1.19341 0.89569 0.94713 0.94144 1.68194 1.38032 1.13366 1.02831 1.23861 0.96242 0.88831 0.93236 1.22389 0.93495 1.01704 1.01899 1.22042 1.02710 0.91717 0.90510 1.19170 0.94461 1.03819 0.97905 1.21229 1.00922 0.87703 0.89134 0.91115 0.76488 0.86908 0.86653 0.73622 0.82346 0.82808 0.78774 0.80135 0.80861 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.70 13.05 21.66 0.28 -47.42 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 3 Si 0.99 41.60 29.55 68.60 2.03 43.62 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.56 -27.41 5.29 -306.98 -1.62 -29.04 16 10 C 0.43 19.44 7.85 87.66 0.69 20.13 16 11 O -0.62 -32.41 15.30 -3.04 -0.05 -32.46 16 12 C 0.11 3.57 6.70 85.63 0.57 4.14 16 13 N -1.10 -32.73 5.93 -190.79 -1.13 -33.86 16 14 S 2.72 73.69 5.72 -56.49 -0.32 73.36 16 15 O -0.98 -29.60 17.21 -128.00 -2.20 -31.80 16 16 O -0.98 -30.96 16.71 -128.00 -2.14 -33.10 16 17 C -0.68 -15.80 5.91 22.05 0.13 -15.67 16 18 C -0.04 -0.81 9.42 22.04 0.21 -0.61 16 19 C -0.12 -2.59 9.98 22.34 0.22 -2.37 16 20 C 0.14 3.29 6.60 40.29 0.27 3.56 16 21 N -0.52 -10.84 10.34 -188.63 -1.95 -12.79 16 22 C 0.15 1.95 11.15 85.07 0.95 2.90 16 23 C -0.18 -1.67 10.03 22.15 0.22 -1.45 16 24 C -0.04 -0.57 9.90 22.50 0.22 -0.35 16 25 C -0.15 -3.03 5.74 -21.28 -0.12 -3.15 16 26 C 0.03 0.63 9.22 22.31 0.21 0.83 16 27 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.40 18.32 7.90 -92.71 -0.73 17.59 16 29 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 30 H 0.12 3.27 7.76 -2.39 -0.02 3.26 16 31 H 0.43 13.40 7.70 -96.74 -0.75 12.66 16 32 H 0.16 3.08 7.56 -2.91 -0.02 3.05 16 33 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.17 2.72 7.55 -2.91 -0.02 2.70 16 Total: -1.00 -76.54 342.43 -2.59 -79.13 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.32 Total: 33.98 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.85 Total: -9.64 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.42 Total: -123.11 kcal Atomic # 8 Polarization: -92.97 SS G_CDS: -4.39 Total: -97.36 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 73.69 SS G_CDS: -0.32 Total: 73.36 kcal Total: -76.54 -2.59 -79.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352534949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds