Wall clock time and date at job start Tue Mar 31 2020 18:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99808 * 2 1 4 4 C 1.50701 * 109.47127 * 270.00115 * 3 2 1 5 5 H 1.08007 * 119.99717 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00339 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99960 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00329 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.47278 * 59.99832 * 8 6 4 10 10 H 1.48498 * 109.47497 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47329 * 299.99982 * 8 6 4 12 12 C 1.34776 * 120.00496 * 180.02562 * 2 1 3 13 13 O 1.21366 * 120.00249 * 183.62363 * 12 2 1 14 14 C 1.49296 * 119.99802 * 3.61707 * 12 2 1 15 15 O 1.21387 * 119.99936 * 354.17502 * 14 12 2 16 16 N 1.34772 * 120.00013 * 174.16989 * 14 12 2 17 17 C 1.38672 * 120.00077 * 180.02562 * 16 14 12 18 18 N 1.29696 * 125.27862 * 180.02562 * 17 16 14 19 19 C 1.32603 * 117.01675 * 179.67921 * 18 17 16 20 20 C 1.47778 * 122.35289 * 180.30515 * 19 18 17 21 21 C 1.35972 * 125.93300 * 359.94904 * 20 19 18 22 22 C 1.41013 * 106.74039 * 179.85172 * 21 20 19 23 23 C 1.34669 * 107.03656 * 0.40484 * 22 21 20 24 24 O 1.34415 * 108.67062 * 359.74931 * 23 22 21 25 25 C 1.34842 * 115.29442 * 0.52195 * 19 18 17 26 26 S 1.76098 * 125.27843 * 359.97150 * 17 16 14 27 27 H 1.09006 * 109.46401 * 263.99353 * 1 2 3 28 28 H 1.08996 * 109.47237 * 23.98986 * 1 2 3 29 29 H 1.09003 * 109.46715 * 144.00252 * 1 2 3 30 30 H 1.09003 * 109.47488 * 29.99777 * 3 2 1 31 31 H 1.08997 * 109.47363 * 150.00101 * 3 2 1 32 32 H 0.96997 * 120.00426 * 180.02562 * 7 6 4 33 33 H 0.97001 * 119.99583 * 0.02562 * 16 14 12 34 34 H 1.08004 * 126.62817 * 359.97438 * 21 20 19 35 35 H 1.08003 * 126.48275 * 180.19111 * 22 21 20 36 36 H 1.08000 * 125.66319 * 179.71181 * 23 22 21 37 37 H 1.08003 * 125.90013 * 179.78210 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6733 8 14 3.4375 3.4171 -3.4340 9 1 2.1396 3.5955 -4.1334 10 1 4.1800 4.7031 -3.4341 11 1 4.2392 2.3821 -4.1348 12 6 2.1390 -1.1671 -0.0005 13 8 3.3508 -1.1682 0.0659 14 6 1.3948 -2.4588 -0.0827 15 8 0.1816 -2.4639 -0.0423 16 7 2.0700 -3.6191 -0.2017 17 6 1.3788 -4.8188 -0.2785 18 7 1.9226 -5.9906 -0.3937 19 6 1.1036 -7.0322 -0.4466 20 6 1.5962 -8.4199 -0.5705 21 6 2.8994 -8.8004 -0.6449 22 6 2.9067 -10.2066 -0.7500 23 6 1.6216 -10.6093 -0.7437 24 8 0.8320 -9.5270 -0.6351 25 6 -0.2103 -6.7357 -0.3839 26 16 -0.3735 -4.9877 -0.2336 27 1 -0.3632 -0.1075 1.0221 28 1 -0.3633 0.9388 -0.4178 29 1 -0.3633 -0.8315 -0.6040 30 1 1.6084 2.0285 0.5138 31 1 3.1499 1.1385 0.5138 32 1 4.0309 4.4436 -0.8505 33 1 3.0395 -3.6150 -0.2336 34 1 3.7624 -8.1512 -0.6252 35 1 3.7779 -10.8405 -0.8251 36 1 1.2819 -11.6321 -0.8148 37 1 -1.0223 -7.4472 -0.4156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354387087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:21 Heat of formation + Delta-G solvation = 22.043969 kcal Electronic energy + Delta-G solvation = -24907.460188 eV Core-core repulsion = 20973.049034 eV Total energy + Delta-G solvation = -3934.411154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.76534 -41.02094 -39.62275 -38.28112 -35.96815 -34.64709 -33.24442 -32.68648 -31.18259 -28.80436 -28.22361 -26.66803 -25.54651 -24.27115 -22.71481 -21.88906 -21.68456 -20.73545 -19.45591 -18.51089 -17.53144 -17.22762 -16.83781 -16.74678 -16.40892 -16.05256 -15.95387 -15.34109 -15.16643 -14.75549 -14.51154 -13.75546 -13.62350 -13.33055 -13.26824 -13.09305 -12.84583 -12.62671 -12.38348 -12.19721 -11.67434 -11.45029 -11.34798 -11.07936 -10.84105 -10.64664 -10.29762 -10.20491 -10.05035 -9.80211 -9.61230 -9.19080 -9.13846 -8.55870 -8.05702 -7.94634 -6.17794 -4.24231 0.26727 0.81019 1.08696 1.54923 1.67130 1.95042 2.25033 2.61664 2.98878 3.25840 3.30456 3.32425 3.43774 3.70612 4.26042 4.33454 4.51555 4.71182 4.76040 4.82169 5.06677 5.17241 5.34585 5.54423 5.68288 5.74035 5.80746 5.87203 5.98244 6.21832 6.35713 6.41308 6.68883 6.81330 7.11964 7.22078 7.40820 7.45513 7.76305 7.97089 8.02612 8.38538 8.79195 9.41359 10.90326 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.002331 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.704599 B =12006.963567 C =12589.109264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.555 5.555 3 C 0.241 3.759 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.503 3.497 13 O -0.515 6.515 14 C 0.511 3.489 15 O -0.483 6.483 16 N -0.598 5.598 17 C 0.287 3.713 18 N -0.493 5.493 19 C 0.159 3.841 20 C 0.049 3.951 21 C -0.165 4.165 22 C -0.214 4.214 23 C -0.034 4.034 24 O -0.170 6.170 25 C -0.288 4.288 26 S 0.222 5.778 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.266 0.734 33 H 0.438 0.562 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.207 0.793 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -23.570 1.661 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.286 5.286 3 C 0.123 3.877 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.282 3.718 13 O -0.392 6.392 14 C 0.293 3.707 15 O -0.356 6.356 16 N -0.250 5.250 17 C -0.082 4.082 18 N -0.216 5.216 19 C 0.028 3.972 20 C -0.004 4.004 21 C -0.185 4.185 22 C -0.233 4.233 23 C -0.102 4.102 24 O -0.066 6.066 25 C -0.429 4.429 26 S 0.473 5.527 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.280 0.720 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.223 0.777 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.527 -22.499 1.866 24.133 hybrid contribution 1.228 -0.679 -1.101 1.784 sum -7.298 -23.178 0.765 24.312 Atomic orbital electron populations 1.22277 0.79289 1.04237 1.01986 1.48161 1.07818 1.06518 1.66073 1.19603 0.92891 0.76909 0.98274 1.21318 1.37477 1.06885 0.91740 0.92226 1.24927 0.95031 0.96167 0.97749 1.69910 1.37745 1.14313 1.30948 0.86498 0.78486 0.77924 0.84193 1.20102 1.21047 1.20059 1.19015 0.87380 0.83623 0.81739 1.90791 1.12656 1.86116 1.49645 1.21471 0.87837 0.85493 0.75864 1.90606 1.13602 1.85209 1.46196 1.42580 1.12605 1.01393 1.68452 1.23859 0.94241 0.88332 1.01740 1.65904 1.37356 0.96075 1.22284 1.16471 0.87735 0.88444 1.04517 1.19129 0.88669 0.84191 1.08387 1.21919 0.96615 0.95128 1.04872 1.21850 0.97826 0.95349 1.08252 1.24146 0.89521 0.90656 1.05888 1.84025 1.37236 1.14026 1.71320 1.27455 1.00322 1.02131 1.13023 1.85959 1.01585 0.97028 1.68096 0.92870 0.90655 0.89048 0.93836 0.93093 0.92392 0.72016 0.82634 0.83036 0.77664 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 9.55 59.85 0.57 1.63 16 2 N -0.55 -11.26 2.86 -183.52 -0.52 -11.79 16 3 C 0.24 5.93 5.16 -5.19 -0.03 5.90 16 4 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.50 9.78 7.73 -11.66 -0.09 9.69 16 13 O -0.52 -11.39 16.04 5.48 0.09 -11.30 16 14 C 0.51 8.05 7.73 -11.66 -0.09 7.96 16 15 O -0.48 -7.39 10.64 5.46 0.06 -7.33 16 16 N -0.60 -8.42 5.38 -12.33 -0.07 -8.49 16 17 C 0.29 3.94 8.37 -87.61 -0.73 3.21 16 18 N -0.49 -6.87 10.41 -10.55 -0.11 -6.98 16 19 C 0.16 2.06 6.65 -84.84 -0.56 1.50 16 20 C 0.05 0.59 7.08 -36.50 -0.26 0.33 16 21 C -0.16 -1.84 10.70 -39.34 -0.42 -2.26 16 22 C -0.21 -1.84 10.89 -39.79 -0.43 -2.28 16 23 C -0.03 -0.26 12.08 29.47 0.36 0.09 16 24 O -0.17 -1.81 10.59 4.38 0.05 -1.76 16 25 C -0.29 -3.22 11.08 29.53 0.33 -2.89 16 26 S 0.22 2.65 20.52 -107.50 -2.21 0.44 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 29 H 0.09 1.41 5.35 -51.94 -0.28 1.13 16 30 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 31 H 0.05 1.39 7.37 -51.93 -0.38 1.00 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.44 5.81 8.30 -40.82 -0.34 5.47 16 34 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.21 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 346.06 15.07 5.21 5.21 Total: -1.00 -31.10 346.06 -7.06 -38.16 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.49 Total: 2.59 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -1.78 Total: 9.81 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.04 Total: -51.83 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.19 Total: -20.40 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.21 Total: 0.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.10 -7.06 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354387087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.201 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds