Wall clock time and date at job start Tue Mar 31 2020 18:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99808 * 2 1 4 4 C 1.50701 * 109.47127 * 270.00115 * 3 2 1 5 5 H 1.08007 * 119.99717 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00339 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99960 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00329 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.47278 * 59.99832 * 8 6 4 10 10 H 1.48498 * 109.47497 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47329 * 299.99982 * 8 6 4 12 12 C 1.34776 * 120.00496 * 180.02562 * 2 1 3 13 13 O 1.21366 * 120.00249 * 183.62363 * 12 2 1 14 14 C 1.49296 * 119.99802 * 3.61707 * 12 2 1 15 15 O 1.21387 * 119.99936 * 354.17502 * 14 12 2 16 16 N 1.34772 * 120.00013 * 174.16989 * 14 12 2 17 17 C 1.38672 * 120.00077 * 180.02562 * 16 14 12 18 18 N 1.29696 * 125.27862 * 180.02562 * 17 16 14 19 19 C 1.32603 * 117.01675 * 179.67921 * 18 17 16 20 20 C 1.47778 * 122.35289 * 180.30515 * 19 18 17 21 21 C 1.35972 * 125.93300 * 359.94904 * 20 19 18 22 22 C 1.41013 * 106.74039 * 179.85172 * 21 20 19 23 23 C 1.34669 * 107.03656 * 0.40484 * 22 21 20 24 24 O 1.34415 * 108.67062 * 359.74931 * 23 22 21 25 25 C 1.34842 * 115.29442 * 0.52195 * 19 18 17 26 26 S 1.76098 * 125.27843 * 359.97150 * 17 16 14 27 27 H 1.09006 * 109.46401 * 263.99353 * 1 2 3 28 28 H 1.08996 * 109.47237 * 23.98986 * 1 2 3 29 29 H 1.09003 * 109.46715 * 144.00252 * 1 2 3 30 30 H 1.09003 * 109.47488 * 29.99777 * 3 2 1 31 31 H 1.08997 * 109.47363 * 150.00101 * 3 2 1 32 32 H 0.96997 * 120.00426 * 180.02562 * 7 6 4 33 33 H 0.97001 * 119.99583 * 0.02562 * 16 14 12 34 34 H 1.08004 * 126.62817 * 359.97438 * 21 20 19 35 35 H 1.08003 * 126.48275 * 180.19111 * 22 21 20 36 36 H 1.08000 * 125.66319 * 179.71181 * 23 22 21 37 37 H 1.08003 * 125.90013 * 179.78210 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6733 8 14 3.4375 3.4171 -3.4340 9 1 2.1396 3.5955 -4.1334 10 1 4.1800 4.7031 -3.4341 11 1 4.2392 2.3821 -4.1348 12 6 2.1390 -1.1671 -0.0005 13 8 3.3508 -1.1682 0.0659 14 6 1.3948 -2.4588 -0.0827 15 8 0.1816 -2.4639 -0.0423 16 7 2.0700 -3.6191 -0.2017 17 6 1.3788 -4.8188 -0.2785 18 7 1.9226 -5.9906 -0.3937 19 6 1.1036 -7.0322 -0.4466 20 6 1.5962 -8.4199 -0.5705 21 6 2.8994 -8.8004 -0.6449 22 6 2.9067 -10.2066 -0.7500 23 6 1.6216 -10.6093 -0.7437 24 8 0.8320 -9.5270 -0.6351 25 6 -0.2103 -6.7357 -0.3839 26 16 -0.3735 -4.9877 -0.2336 27 1 -0.3632 -0.1075 1.0221 28 1 -0.3633 0.9388 -0.4178 29 1 -0.3633 -0.8315 -0.6040 30 1 1.6084 2.0285 0.5138 31 1 3.1499 1.1385 0.5138 32 1 4.0309 4.4436 -0.8505 33 1 3.0395 -3.6150 -0.2336 34 1 3.7624 -8.1512 -0.6252 35 1 3.7779 -10.8405 -0.8251 36 1 1.2819 -11.6321 -0.8148 37 1 -1.0223 -7.4472 -0.4156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354387087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:20 Heat of formation + Delta-G solvation = 1.707539 kcal Electronic energy + Delta-G solvation = -24908.342041 eV Core-core repulsion = 20973.049034 eV Total energy + Delta-G solvation = -3935.293008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.49411 -42.32745 -40.70887 -39.73716 -37.38572 -36.07396 -34.68194 -33.97264 -32.10232 -30.15810 -29.57497 -28.02867 -26.94683 -25.65644 -24.13844 -22.76921 -22.61905 -21.86777 -20.57661 -19.60249 -18.77578 -18.71136 -18.27982 -17.84846 -17.53230 -17.33108 -17.08984 -16.87765 -16.27248 -16.03881 -15.96830 -15.09483 -14.96342 -14.51013 -14.26769 -14.13128 -13.90361 -13.82058 -13.71396 -13.48731 -13.37292 -13.02813 -12.71114 -12.57640 -12.42924 -12.24544 -12.14195 -11.75034 -11.05097 -10.96141 -10.65928 -10.60622 -10.51548 -10.12116 -9.65993 -8.88286 -8.25305 -6.39888 -0.73352 -0.17698 0.00824 0.56896 0.61656 0.79625 1.40243 1.42789 1.49731 1.50792 1.74846 1.91300 2.14073 2.31132 2.42840 3.03653 3.09290 3.46343 3.83514 4.05826 4.11676 4.26010 4.35381 4.47609 4.66088 4.71855 4.83990 4.90433 5.00436 5.07428 5.10591 5.15930 5.27649 5.40703 5.54294 5.69054 5.97198 6.02417 6.10274 6.38054 6.48473 6.64855 6.85295 7.30379 8.82135 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.002331 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.704599 B =12006.963567 C =12589.109264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.564 5.564 3 C 0.255 3.745 4 C -0.549 4.549 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.500 3.500 13 O -0.550 6.550 14 C 0.527 3.473 15 O -0.478 6.478 16 N -0.591 5.591 17 C 0.261 3.739 18 N -0.503 5.503 19 C 0.138 3.862 20 C 0.019 3.981 21 C -0.177 4.177 22 C -0.227 4.227 23 C -0.017 4.017 24 O -0.178 6.178 25 C -0.270 4.270 26 S 0.246 5.754 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.269 0.731 33 H 0.439 0.561 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.252 0.748 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 -25.905 0.697 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.294 5.294 3 C 0.135 3.865 4 C -0.588 4.588 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.281 3.719 13 O -0.429 6.429 14 C 0.308 3.692 15 O -0.351 6.351 16 N -0.242 5.242 17 C -0.107 4.107 18 N -0.227 5.227 19 C 0.007 3.993 20 C -0.033 4.033 21 C -0.198 4.198 22 C -0.246 4.246 23 C -0.084 4.084 24 O -0.074 6.074 25 C -0.411 4.411 26 S 0.497 5.503 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.281 0.719 34 H 0.165 0.835 35 H 0.193 0.807 36 H 0.268 0.732 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.162 -24.872 0.903 26.883 hybrid contribution 1.709 -0.151 -0.762 1.877 sum -8.453 -25.024 0.141 26.413 Atomic orbital electron populations 1.22462 0.76686 1.04759 1.03623 1.48108 1.09338 1.05615 1.66347 1.19116 0.91783 0.78768 0.96878 1.21600 1.37511 1.07045 0.92615 0.92507 1.25790 0.94730 0.96272 1.01865 1.70019 1.38409 1.14752 1.33010 0.85485 0.78795 0.77447 0.79219 1.18708 1.20413 1.20138 1.19519 0.87173 0.84726 0.80529 1.90764 1.14360 1.86968 1.50840 1.20367 0.87440 0.84617 0.76761 1.90600 1.12905 1.85155 1.46416 1.42300 1.12634 1.01274 1.68017 1.23920 0.95223 0.87943 1.03577 1.65843 1.38462 0.96473 1.21884 1.16705 0.88341 0.88744 1.05478 1.19123 0.89175 0.84392 1.10627 1.22108 0.96279 0.96682 1.04754 1.22161 0.99358 0.94314 1.08736 1.25085 0.89072 0.91490 1.02789 1.84023 1.37653 1.14226 1.71472 1.27748 1.00417 1.02064 1.10863 1.85814 0.99770 0.97480 1.67241 0.90763 0.90710 0.87779 0.94368 0.96595 0.92197 0.71889 0.83459 0.80730 0.73233 0.77592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 9.55 127.77 1.22 3.31 16 2 N -0.56 -23.18 2.86 -852.89 -2.44 -25.62 16 3 C 0.25 12.93 5.16 85.63 0.44 13.37 16 4 C -0.55 -30.04 9.39 25.60 0.24 -29.80 16 5 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 8 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 C 0.50 19.77 7.73 87.22 0.67 20.45 16 13 O -0.55 -25.28 16.04 -3.30 -0.05 -25.33 16 14 C 0.53 16.43 7.73 87.22 0.67 17.10 16 15 O -0.48 -13.96 10.64 -3.36 -0.04 -14.00 16 16 N -0.59 -16.65 5.38 -311.27 -1.68 -18.33 16 17 C 0.26 7.04 8.37 179.30 1.50 8.54 16 18 N -0.50 -13.94 10.41 -187.30 -1.95 -15.89 16 19 C 0.14 3.44 6.65 40.77 0.27 3.72 16 20 C 0.02 0.44 7.08 24.27 0.17 0.61 16 21 C -0.18 -3.87 10.70 22.42 0.24 -3.63 16 22 C -0.23 -3.44 10.89 22.13 0.24 -3.20 16 23 C -0.02 -0.21 12.08 67.00 0.81 0.60 16 24 O -0.18 -3.39 10.59 -7.24 -0.08 -3.47 16 25 C -0.27 -5.52 11.08 67.04 0.74 -4.78 16 26 S 0.25 5.45 20.52 -56.49 -1.16 4.29 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 29 H 0.10 3.05 5.35 -2.51 -0.01 3.04 16 30 H 0.04 1.95 8.07 -2.39 -0.02 1.94 16 31 H 0.02 0.91 7.37 -2.39 -0.02 0.90 16 32 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.44 12.00 8.30 -92.71 -0.77 11.23 16 34 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.25 0.53 8.06 -2.91 -0.02 0.50 16 37 H 0.21 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -68.28 346.06 2.99 -65.29 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.38 Total: 13.45 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 7.69 Total: 27.49 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -5.78 Total: -112.90 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.17 Total: -42.79 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.16 Total: 4.29 kcal Total: -68.28 2.99 -65.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354387087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.993 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds