Wall clock time and date at job start Tue Mar 31 2020 18:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99943 * 2 1 4 4 H 1.48501 * 109.46911 * 269.99705 * 3 2 1 5 5 H 1.48500 * 109.46711 * 29.99858 * 3 2 1 6 6 H 1.48501 * 109.46983 * 149.99649 * 3 2 1 7 7 C 1.37876 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99674 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00371 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47269 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00553 * 179.97438 * 11 10 9 13 13 O 1.21366 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.49297 * 120.00230 * 180.02562 * 12 11 10 15 15 O 1.21380 * 119.99846 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99729 * 180.02562 * 14 12 11 17 17 C 1.38681 * 119.99547 * 180.02562 * 16 14 12 18 18 N 1.29697 * 125.27289 * 180.02562 * 17 16 14 19 19 C 1.32601 * 117.01546 * 179.67696 * 18 17 16 20 20 C 1.47777 * 122.35741 * 180.30449 * 19 18 17 21 21 C 1.35977 * 125.92776 * 359.95053 * 20 19 18 22 22 C 1.41011 * 106.73922 * 179.85153 * 21 20 19 23 23 C 1.34673 * 107.03622 * 0.40702 * 22 21 20 24 24 O 1.34419 * 108.67163 * 359.74707 * 23 22 21 25 25 C 1.34845 * 115.29412 * 0.52169 * 19 18 17 26 26 S 1.76092 * 125.27990 * 359.96596 * 17 16 14 27 27 H 0.97004 * 120.00254 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47226 * 59.99534 * 9 7 2 29 29 H 1.09004 * 109.46897 * 300.00171 * 9 7 2 30 30 H 1.08995 * 109.47467 * 59.99572 * 10 9 7 31 31 H 1.09007 * 109.47163 * 299.99109 * 10 9 7 32 32 H 0.97005 * 119.99340 * 0.02562 * 11 10 9 33 33 H 0.96998 * 120.00170 * 359.97438 * 16 14 12 34 34 H 1.08001 * 126.62981 * 359.97429 * 21 20 19 35 35 H 1.08002 * 126.48663 * 180.18780 * 22 21 20 36 36 H 1.07994 * 125.66741 * 179.71392 * 23 22 21 37 37 H 1.08002 * 125.90418 * 179.78759 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 6 6.1604 -3.8036 0.0014 13 8 5.5536 -4.8547 0.0013 14 6 7.6534 -3.8036 0.0019 15 8 8.2603 -2.7524 0.0015 16 7 8.3273 -4.9708 0.0018 17 6 9.7141 -4.9707 0.0028 18 7 10.4631 -6.0296 0.0023 19 6 11.7753 -5.8390 -0.0032 20 6 12.7373 -6.9608 -0.0110 21 6 12.4210 -8.2832 -0.0125 22 6 13.6397 -8.9924 -0.0241 23 6 14.6284 -8.0779 -0.0199 24 8 14.0796 -6.8509 -0.0120 25 6 12.1704 -4.5498 0.0034 26 16 10.7311 -3.5332 0.0034 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1501 -0.8891 31 1 3.6579 -3.1505 0.8909 32 1 5.9715 -1.7964 0.0014 33 1 7.8423 -5.8108 0.0017 34 1 11.4281 -8.7083 -0.0079 35 1 13.7580 -10.0659 -0.0311 36 1 15.6864 -8.2944 -0.0220 37 1 13.1924 -4.2005 0.0038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354412468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:04 Heat of formation + Delta-G solvation = 2.646493 kcal Electronic energy + Delta-G solvation = -24077.214693 eV Core-core repulsion = 20141.962401 eV Total energy + Delta-G solvation = -3935.252292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87566 -41.28262 -39.83266 -38.79373 -36.01755 -35.05314 -33.35460 -32.92847 -31.36411 -30.45547 -28.92485 -26.82572 -25.23043 -23.86451 -22.13741 -21.91002 -21.37855 -21.00968 -20.12872 -18.86096 -18.32591 -17.54802 -17.14059 -16.85694 -16.65467 -16.43185 -16.37800 -15.39417 -15.26149 -15.18365 -14.32148 -14.25210 -14.01049 -13.77398 -13.42097 -13.33395 -13.20548 -12.95570 -12.69036 -12.39401 -11.70346 -11.63317 -11.43674 -11.34763 -10.54716 -10.45392 -10.31640 -10.23768 -10.05042 -9.82175 -9.77402 -9.43310 -9.36702 -8.99819 -8.68361 -8.18556 -6.18350 -4.19928 0.07096 0.61588 0.83671 1.36277 1.39020 1.64787 2.11592 2.43216 2.78051 3.00176 3.21531 3.30027 3.30349 3.31520 4.10903 4.27148 4.31736 4.54785 4.65253 4.70853 4.91338 5.14513 5.17765 5.39845 5.56682 5.61403 5.70766 5.79959 5.97088 6.08439 6.16948 6.24935 6.35718 6.66585 6.87338 7.03262 7.07878 7.25172 7.40510 7.54764 7.88426 8.34158 8.84408 9.41027 10.94221 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.036892 B = 0.001864 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.799880 B =15018.580097 C =15756.897070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.126 3.874 11 N -0.682 5.682 12 C 0.510 3.490 13 O -0.515 6.515 14 C 0.511 3.489 15 O -0.482 6.482 16 N -0.596 5.596 17 C 0.280 3.720 18 N -0.488 5.488 19 C 0.159 3.841 20 C 0.046 3.954 21 C -0.163 4.163 22 C -0.214 4.214 23 C -0.031 4.031 24 O -0.170 6.170 25 C -0.283 4.283 26 S 0.227 5.773 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.439 0.561 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.207 0.793 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.564 -12.601 0.002 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.333 5.333 12 C 0.288 3.712 13 O -0.391 6.391 14 C 0.292 3.708 15 O -0.354 6.354 16 N -0.248 5.248 17 C -0.089 4.089 18 N -0.211 5.211 19 C 0.028 3.972 20 C -0.006 4.006 21 C -0.184 4.184 22 C -0.233 4.233 23 C -0.100 4.100 24 O -0.066 6.066 25 C -0.424 4.424 26 S 0.478 5.522 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.280 0.720 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.224 0.776 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 28.925 -11.535 0.009 31.140 hybrid contribution 0.962 -0.162 -0.018 0.976 sum 29.888 -11.697 -0.009 32.095 Atomic orbital electron populations 1.69891 1.06297 1.27206 1.49912 1.24980 0.94766 0.99168 0.94182 0.86775 0.80319 0.83519 0.78636 1.20128 1.21177 1.18969 1.20845 0.88307 0.95013 1.52345 0.90480 1.19834 0.98235 0.90718 0.97361 1.21834 0.73838 1.01232 1.02594 1.46221 1.09865 1.07592 1.69659 1.19187 0.85785 0.85838 0.80380 1.90822 1.68703 1.30766 1.48820 1.20998 0.90449 0.82743 0.76626 1.90722 1.69018 1.30320 1.45324 1.42390 1.01499 1.11970 1.68945 1.23813 0.89207 0.93210 1.02629 1.65880 1.03385 1.29967 1.21911 1.16468 0.86664 0.89392 1.04631 1.19095 0.80121 0.92589 1.08824 1.21914 1.00043 0.91573 1.04837 1.21858 0.92156 1.00973 1.08312 1.24172 0.99452 0.80572 1.05783 1.84030 1.18780 1.32087 1.71686 1.27484 1.05713 0.96586 1.12623 1.86033 0.92527 1.05334 1.68327 0.92424 0.95614 0.96053 0.90834 0.90811 0.75303 0.71951 0.82643 0.82973 0.77597 0.79955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.53 -14.03 9.66 -34.44 -0.33 -14.36 16 8 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.02 -0.51 4.15 -27.89 -0.12 -0.62 16 10 C 0.13 2.29 5.61 -4.05 -0.02 2.26 16 11 N -0.68 -10.16 5.55 -60.78 -0.34 -10.49 16 12 C 0.51 7.24 7.88 -11.66 -0.09 7.14 16 13 O -0.51 -8.37 16.47 5.48 0.09 -8.28 16 14 C 0.51 6.26 7.84 -11.66 -0.09 6.17 16 15 O -0.48 -6.26 13.98 5.47 0.08 -6.18 16 16 N -0.60 -6.56 5.38 -12.33 -0.07 -6.62 16 17 C 0.28 3.23 8.37 -87.60 -0.73 2.50 16 18 N -0.49 -5.85 10.41 -10.55 -0.11 -5.96 16 19 C 0.16 1.81 6.65 -84.84 -0.56 1.24 16 20 C 0.05 0.50 7.08 -36.49 -0.26 0.24 16 21 C -0.16 -1.60 10.70 -39.34 -0.42 -2.02 16 22 C -0.21 -1.60 10.89 -39.79 -0.43 -2.03 16 23 C -0.03 -0.21 12.08 29.47 0.36 0.14 16 24 O -0.17 -1.61 10.59 4.38 0.05 -1.56 16 25 C -0.28 -2.75 11.08 29.53 0.33 -2.42 16 26 S 0.23 2.34 20.52 -107.50 -2.21 0.14 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 29 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.41 5.49 7.94 -40.82 -0.32 5.17 16 33 H 0.44 4.30 8.29 -40.82 -0.34 3.96 16 34 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -31.45 348.36 -7.18 -38.63 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.55 Total: 4.88 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.48 Total: 0.14 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.26 Total: -48.73 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.21 Total: -16.03 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.21 Total: 0.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.45 -7.18 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354412468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.276 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds