Wall clock time and date at job start Tue Mar 31 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99943 * 2 1 4 4 H 1.48501 * 109.46911 * 269.99705 * 3 2 1 5 5 H 1.48500 * 109.46711 * 29.99858 * 3 2 1 6 6 H 1.48501 * 109.46983 * 149.99649 * 3 2 1 7 7 C 1.37876 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99674 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00371 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47269 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00553 * 179.97438 * 11 10 9 13 13 O 1.21366 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.49297 * 120.00230 * 180.02562 * 12 11 10 15 15 O 1.21380 * 119.99846 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99729 * 180.02562 * 14 12 11 17 17 C 1.38681 * 119.99547 * 180.02562 * 16 14 12 18 18 N 1.29697 * 125.27289 * 180.02562 * 17 16 14 19 19 C 1.32601 * 117.01546 * 179.67696 * 18 17 16 20 20 C 1.47777 * 122.35741 * 180.30449 * 19 18 17 21 21 C 1.35977 * 125.92776 * 359.95053 * 20 19 18 22 22 C 1.41011 * 106.73922 * 179.85153 * 21 20 19 23 23 C 1.34673 * 107.03622 * 0.40702 * 22 21 20 24 24 O 1.34419 * 108.67163 * 359.74707 * 23 22 21 25 25 C 1.34845 * 115.29412 * 0.52169 * 19 18 17 26 26 S 1.76092 * 125.27990 * 359.96596 * 17 16 14 27 27 H 0.97004 * 120.00254 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47226 * 59.99534 * 9 7 2 29 29 H 1.09004 * 109.46897 * 300.00171 * 9 7 2 30 30 H 1.08995 * 109.47467 * 59.99572 * 10 9 7 31 31 H 1.09007 * 109.47163 * 299.99109 * 10 9 7 32 32 H 0.97005 * 119.99340 * 0.02562 * 11 10 9 33 33 H 0.96998 * 120.00170 * 359.97438 * 16 14 12 34 34 H 1.08001 * 126.62981 * 359.97429 * 21 20 19 35 35 H 1.08002 * 126.48663 * 180.18780 * 22 21 20 36 36 H 1.07994 * 125.66741 * 179.71392 * 23 22 21 37 37 H 1.08002 * 125.90418 * 179.78759 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6365 0.0009 12 6 6.1604 -3.8036 0.0014 13 8 5.5536 -4.8547 0.0013 14 6 7.6534 -3.8036 0.0019 15 8 8.2603 -2.7524 0.0015 16 7 8.3273 -4.9708 0.0018 17 6 9.7141 -4.9707 0.0028 18 7 10.4631 -6.0296 0.0023 19 6 11.7753 -5.8390 -0.0032 20 6 12.7373 -6.9608 -0.0110 21 6 12.4210 -8.2832 -0.0125 22 6 13.6397 -8.9924 -0.0241 23 6 14.6284 -8.0779 -0.0199 24 8 14.0796 -6.8509 -0.0120 25 6 12.1704 -4.5498 0.0034 26 16 10.7311 -3.5332 0.0034 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1501 -0.8891 31 1 3.6579 -3.1505 0.8909 32 1 5.9715 -1.7964 0.0014 33 1 7.8423 -5.8108 0.0017 34 1 11.4281 -8.7083 -0.0079 35 1 13.7580 -10.0659 -0.0311 36 1 15.6864 -8.2944 -0.0220 37 1 13.1924 -4.2005 0.0038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354412468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:03 Heat of formation + Delta-G solvation = -20.001574 kcal Electronic energy + Delta-G solvation = -24078.196787 eV Core-core repulsion = 20141.962401 eV Total energy + Delta-G solvation = -3936.234385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.50284 -42.31171 -40.74331 -39.90150 -37.19240 -36.26776 -34.81132 -33.98113 -32.21444 -32.09270 -29.62843 -28.09945 -26.50007 -24.97034 -22.97404 -22.73522 -22.60953 -22.21675 -21.03472 -19.79430 -19.32872 -18.99895 -18.26078 -17.83854 -17.63126 -17.46116 -17.12055 -16.54986 -16.32673 -16.21420 -16.00995 -15.42695 -15.32482 -14.67752 -14.59526 -14.51327 -14.13975 -13.82507 -13.52473 -13.39901 -13.33931 -13.07212 -12.57258 -12.41316 -12.20929 -12.15178 -11.77006 -11.49838 -11.07964 -11.03190 -10.96934 -10.77800 -10.54268 -10.32987 -10.13519 -8.90542 -8.28626 -6.35591 -0.77198 -0.20588 -0.06622 0.52365 0.56965 0.71422 1.41437 1.43083 1.48094 1.53724 1.71421 1.81167 2.11207 2.28575 2.37704 3.07061 3.11249 3.45036 3.82353 4.04691 4.10662 4.25104 4.25479 4.40085 4.40499 4.66350 4.74068 4.89845 4.90172 4.99849 5.09527 5.20221 5.33074 5.39138 5.53416 5.60055 5.94215 6.04753 6.20090 6.28458 6.45175 6.68786 6.75818 7.29199 8.87497 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.036892 B = 0.001864 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.799880 B =15018.580097 C =15756.897070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.036 0.964 9 C -0.019 4.019 10 C 0.141 3.859 11 N -0.677 5.677 12 C 0.517 3.483 13 O -0.536 6.536 14 C 0.524 3.476 15 O -0.487 6.487 16 N -0.587 5.587 17 C 0.261 3.739 18 N -0.499 5.499 19 C 0.139 3.861 20 C 0.017 3.983 21 C -0.175 4.175 22 C -0.227 4.227 23 C -0.018 4.018 24 O -0.179 6.179 25 C -0.270 4.270 26 S 0.240 5.760 27 H 0.267 0.733 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.422 0.578 33 H 0.443 0.557 34 H 0.150 0.850 35 H 0.175 0.825 36 H 0.250 0.750 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.278 -12.068 0.008 35.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.056 4.056 10 C 0.018 3.982 11 N -0.329 5.329 12 C 0.296 3.704 13 O -0.414 6.414 14 C 0.304 3.696 15 O -0.359 6.359 16 N -0.239 5.239 17 C -0.107 4.107 18 N -0.222 5.222 19 C 0.009 3.991 20 C -0.035 4.035 21 C -0.196 4.196 22 C -0.245 4.245 23 C -0.085 4.085 24 O -0.075 6.075 25 C -0.410 4.410 26 S 0.491 5.509 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.260 0.740 33 H 0.285 0.715 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.266 0.734 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 32.686 -11.030 0.016 34.497 hybrid contribution -0.120 -0.504 -0.022 0.519 sum 32.566 -11.533 -0.006 34.548 Atomic orbital electron populations 1.70059 1.08469 1.28336 1.51951 1.25995 0.95595 1.03608 0.93829 0.85642 0.79762 0.77874 0.79258 1.19167 1.21481 1.16027 1.21211 0.91307 0.93530 1.51417 0.94558 1.19709 0.94633 0.92883 0.98413 1.21370 0.75802 0.99139 1.01841 1.45916 1.08480 1.08509 1.70043 1.19360 0.86649 0.85067 0.79278 1.90820 1.69508 1.31525 1.49504 1.20331 0.89218 0.83030 0.76993 1.90728 1.68792 1.30517 1.45900 1.42212 1.01608 1.11720 1.68404 1.23906 0.89152 0.93840 1.03818 1.65840 1.04005 1.30570 1.21818 1.16698 0.86581 0.90376 1.05484 1.19143 0.80740 0.92709 1.10924 1.22111 1.00872 0.91903 1.04668 1.22170 0.91315 1.02337 1.08729 1.25079 1.01111 0.79369 1.02954 1.84026 1.18151 1.33473 1.71867 1.27734 1.06511 0.95874 1.10915 1.85936 0.92403 1.04727 1.67820 0.92392 0.94352 0.94497 0.91745 0.91746 0.74048 0.71476 0.83210 0.80730 0.73384 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.53 13.96 21.45 0.30 -57.23 16 2 C 0.01 0.40 5.47 84.66 0.46 0.86 16 3 Si 0.95 41.21 27.47 68.60 1.88 43.10 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 7 C -0.54 -29.00 9.66 25.60 0.25 -28.75 16 8 H 0.04 2.19 7.99 -2.91 -0.02 2.16 16 9 C -0.02 -0.77 4.15 29.84 0.12 -0.64 16 10 C 0.14 5.04 5.61 86.38 0.48 5.52 16 11 N -0.68 -19.14 5.55 -464.58 -2.58 -21.72 16 12 C 0.52 14.13 7.88 87.22 0.69 14.82 16 13 O -0.54 -17.22 16.47 -3.30 -0.05 -17.27 16 14 C 0.52 12.17 7.84 87.22 0.68 12.85 16 15 O -0.49 -11.75 13.98 -3.34 -0.05 -11.79 16 16 N -0.59 -12.48 5.38 -311.26 -1.68 -14.15 16 17 C 0.26 5.82 8.37 179.29 1.50 7.32 16 18 N -0.50 -11.79 10.41 -187.29 -1.95 -13.73 16 19 C 0.14 3.06 6.65 40.77 0.27 3.33 16 20 C 0.02 0.35 7.08 24.27 0.17 0.52 16 21 C -0.17 -3.33 10.70 22.42 0.24 -3.09 16 22 C -0.23 -2.95 10.89 22.13 0.24 -2.71 16 23 C -0.02 -0.19 12.08 67.00 0.81 0.62 16 24 O -0.18 -3.07 10.59 -7.26 -0.08 -3.15 16 25 C -0.27 -4.83 11.08 67.04 0.74 -4.09 16 26 S 0.24 4.60 20.52 -56.49 -1.16 3.44 16 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.04 1.50 7.20 -2.39 -0.02 1.49 16 29 H 0.04 1.43 7.57 -2.39 -0.02 1.41 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.42 10.24 7.94 -92.70 -0.74 9.51 16 33 H 0.44 8.52 8.29 -92.71 -0.77 7.75 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.25 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -69.27 348.36 0.91 -68.36 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.40 Total: 17.59 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.67 Total: 6.56 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.90 Total: -106.84 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.18 Total: -32.22 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.10 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.16 Total: 3.44 kcal Total: -69.27 0.91 -68.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354412468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.354 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds