Wall clock time and date at job start Tue Mar 31 2020 18:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21365 * 120.00483 * 0.02562 * 13 12 2 15 15 C 1.49299 * 119.99751 * 180.02562 * 13 12 2 16 16 O 1.21377 * 120.00063 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99751 * 179.97438 * 15 13 12 18 18 C 1.38675 * 119.99782 * 180.02562 * 17 15 13 19 19 N 1.29691 * 125.27480 * 179.72656 * 18 17 15 20 20 C 1.32612 * 117.01650 * 179.77417 * 19 18 17 21 21 C 1.47777 * 122.35201 * 180.22040 * 20 19 18 22 22 C 1.35964 * 125.93375 * 0.03509 * 21 20 19 23 23 C 1.41020 * 106.74448 * 179.84839 * 22 21 20 24 24 C 1.34670 * 107.02773 * 0.40092 * 23 22 21 25 25 O 1.34408 * 108.67581 * 359.75305 * 24 23 22 26 26 C 1.34844 * 115.29253 * 0.51588 * 20 19 18 27 27 S 1.76096 * 125.27823 * 0.02562 * 18 17 15 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 0.96997 * 119.99849 * 0.02562 * 17 15 13 34 34 H 1.07999 * 126.63328 * 359.97039 * 22 21 20 35 35 H 1.07994 * 126.48934 * 180.16832 * 23 22 21 36 36 H 1.08004 * 125.66547 * 179.74637 * 24 23 22 37 37 H 1.08001 * 125.89931 * 179.69293 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8579 1.1594 2.4118 15 6 2.6452 -0.7217 3.5760 16 8 2.9347 -1.8992 3.5214 17 7 2.7744 -0.0491 4.7369 18 6 3.2376 -0.7026 5.8689 19 7 3.4055 -0.1562 7.0330 20 6 3.8543 -0.9374 8.0061 21 6 4.0835 -0.4391 9.3783 22 6 3.8736 0.8328 9.8107 23 6 4.2172 0.8589 11.1781 24 6 4.6237 -0.3823 11.5064 25 8 4.5417 -1.1644 10.4164 26 6 4.0928 -2.2170 7.6538 27 16 3.6961 -2.4010 5.9468 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 2.5433 0.8919 4.7804 34 1 3.5117 1.6623 9.2214 35 1 4.1677 1.7135 11.8365 36 1 4.9599 -0.6971 12.4833 37 1 4.4636 -2.9946 8.3052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354420393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:22 Heat of formation + Delta-G solvation = 3.680042 kcal Electronic energy + Delta-G solvation = -24599.310624 eV Core-core repulsion = 20664.103150 eV Total energy + Delta-G solvation = -3935.207474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.78140 -40.95885 -39.61195 -38.40165 -35.72821 -34.84824 -33.26022 -32.55017 -31.20613 -29.35571 -28.76428 -26.13280 -25.39237 -24.23864 -22.15776 -21.78868 -21.53380 -20.45087 -19.73635 -18.80568 -18.24399 -17.41021 -16.78926 -16.51990 -16.45472 -16.12503 -15.85936 -15.31123 -15.20616 -14.66949 -14.46706 -13.67287 -13.61877 -13.40377 -13.29498 -13.10939 -12.86042 -12.58777 -12.13443 -11.89626 -11.49475 -11.29088 -11.14214 -11.07132 -10.88864 -10.45813 -10.34426 -10.22052 -10.07385 -9.62973 -9.44688 -9.24002 -9.20257 -8.71704 -8.29377 -8.04730 -6.24487 -4.34845 0.24613 0.79035 1.05863 1.53311 1.63322 1.91839 2.23053 2.59842 2.96503 3.21075 3.26400 3.27877 3.39523 3.72866 4.24028 4.27313 4.68076 4.74470 4.80541 4.84444 5.05041 5.08688 5.33697 5.54897 5.67218 5.73607 5.84575 6.20146 6.39059 6.62236 6.71918 6.78002 6.91252 7.02762 7.17045 7.39531 7.43043 7.54351 7.69957 7.95728 8.24012 8.43518 8.72601 9.32465 10.81409 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.002071 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.791634 B =13519.171638 C =14071.110954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.262 3.738 3 H 0.057 0.943 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.906 3.094 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.661 5.661 13 C 0.503 3.497 14 O -0.525 6.525 15 C 0.509 3.491 16 O -0.486 6.486 17 N -0.598 5.598 18 C 0.285 3.715 19 N -0.492 5.492 20 C 0.159 3.841 21 C 0.049 3.951 22 C -0.165 4.165 23 C -0.214 4.214 24 C -0.034 4.034 25 O -0.170 6.170 26 C -0.287 4.287 27 S 0.224 5.776 28 H 0.096 0.904 29 H 0.031 0.969 30 H 0.017 0.983 31 H 0.267 0.733 32 H 0.404 0.596 33 H 0.438 0.562 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.207 0.793 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 -4.247 23.382 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.074 0.926 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.310 5.310 13 C 0.280 3.720 14 O -0.403 6.403 15 C 0.291 3.709 16 O -0.358 6.358 17 N -0.250 5.250 18 C -0.084 4.084 19 N -0.215 5.215 20 C 0.028 3.972 21 C -0.004 4.004 22 C -0.185 4.185 23 C -0.233 4.233 24 C -0.102 4.102 25 O -0.066 6.066 26 C -0.428 4.428 27 S 0.475 5.525 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.239 0.761 33 H 0.280 0.720 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.223 0.777 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.570 -4.707 22.327 23.487 hybrid contribution 0.416 0.180 0.288 0.537 sum 5.986 -4.527 22.615 23.828 Atomic orbital electron populations 1.22115 0.97597 0.99714 1.01390 1.19059 0.91589 0.94208 0.79002 0.92556 1.21122 1.33116 1.13637 0.89901 0.91696 1.24880 0.94619 0.94920 0.99132 1.69875 1.35420 1.22258 1.24330 0.86426 0.79234 0.79598 0.81412 1.21057 1.20052 1.20018 1.46548 1.60828 1.14632 1.09010 1.19176 0.81681 0.87224 0.83886 1.90783 1.50450 1.14854 1.84179 1.21419 0.77919 0.87099 0.84466 1.90683 1.46320 1.15330 1.83425 1.42511 1.61297 1.15901 1.05334 1.23862 1.00672 0.94695 0.89144 1.65902 1.21219 1.36522 0.97900 1.16475 1.02572 0.88721 0.89464 1.19121 1.05235 0.89946 0.86072 1.21912 1.04585 0.96881 0.95154 1.21849 1.06445 0.98552 0.96432 1.24150 1.05339 0.90215 0.90475 1.84025 1.66006 1.39286 1.17285 1.27464 1.12153 1.00985 1.02217 1.86034 1.59465 1.05581 1.01374 0.88560 0.94968 0.96364 0.92287 0.76120 0.72002 0.82644 0.83029 0.77658 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.26 6.22 2.56 -69.09 -0.18 6.04 16 3 H 0.06 1.51 7.58 -51.92 -0.39 1.12 16 4 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.62 11.32 55.43 0.63 -22.99 16 8 Si 0.91 19.92 29.54 -169.99 -5.02 14.90 16 9 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 N -0.66 -13.03 5.06 -55.42 -0.28 -13.31 16 13 C 0.50 9.20 7.85 -11.66 -0.09 9.11 16 14 O -0.52 -10.76 16.14 5.48 0.09 -10.67 16 15 C 0.51 7.81 7.84 -11.66 -0.09 7.72 16 16 O -0.49 -7.64 13.98 5.47 0.08 -7.57 16 17 N -0.60 -8.11 5.38 -12.33 -0.07 -8.18 16 18 C 0.29 3.86 8.37 -87.61 -0.73 3.12 16 19 N -0.49 -6.72 10.41 -10.55 -0.11 -6.83 16 20 C 0.16 2.02 6.65 -84.83 -0.56 1.46 16 21 C 0.05 0.58 7.08 -36.50 -0.26 0.32 16 22 C -0.16 -1.80 10.70 -39.34 -0.42 -2.22 16 23 C -0.21 -1.80 10.89 -39.79 -0.43 -2.23 16 24 C -0.03 -0.26 12.08 29.47 0.36 0.10 16 25 O -0.17 -1.78 10.59 4.40 0.05 -1.74 16 26 C -0.29 -3.19 11.08 29.53 0.33 -2.86 16 27 S 0.22 2.70 20.52 -107.50 -2.21 0.50 16 28 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.40 7.27 8.01 -40.82 -0.33 6.94 16 33 H 0.44 5.46 8.29 -40.82 -0.34 5.12 16 34 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.21 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -28.98 347.14 -7.20 -36.18 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.45 Total: 9.24 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.14 Total: 5.23 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.17 Total: -51.31 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.21 Total: -19.97 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.21 Total: 0.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.98 -7.20 -36.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354420393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.860 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds