Wall clock time and date at job start Tue Mar 31 2020 18:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21365 * 120.00483 * 0.02562 * 13 12 2 15 15 C 1.49299 * 119.99751 * 180.02562 * 13 12 2 16 16 O 1.21377 * 120.00063 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99751 * 179.97438 * 15 13 12 18 18 C 1.38675 * 119.99782 * 180.02562 * 17 15 13 19 19 N 1.29691 * 125.27480 * 179.72656 * 18 17 15 20 20 C 1.32612 * 117.01650 * 179.77417 * 19 18 17 21 21 C 1.47777 * 122.35201 * 180.22040 * 20 19 18 22 22 C 1.35964 * 125.93375 * 0.03509 * 21 20 19 23 23 C 1.41020 * 106.74448 * 179.84839 * 22 21 20 24 24 C 1.34670 * 107.02773 * 0.40092 * 23 22 21 25 25 O 1.34408 * 108.67581 * 359.75305 * 24 23 22 26 26 C 1.34844 * 115.29253 * 0.51588 * 20 19 18 27 27 S 1.76096 * 125.27823 * 0.02562 * 18 17 15 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 0.96997 * 119.99849 * 0.02562 * 17 15 13 34 34 H 1.07999 * 126.63328 * 359.97039 * 22 21 20 35 35 H 1.07994 * 126.48934 * 180.16832 * 23 22 21 36 36 H 1.08004 * 125.66547 * 179.74637 * 24 23 22 37 37 H 1.08001 * 125.89931 * 179.69293 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8579 1.1594 2.4118 15 6 2.6452 -0.7217 3.5760 16 8 2.9347 -1.8992 3.5214 17 7 2.7744 -0.0491 4.7369 18 6 3.2376 -0.7026 5.8689 19 7 3.4055 -0.1562 7.0330 20 6 3.8543 -0.9374 8.0061 21 6 4.0835 -0.4391 9.3783 22 6 3.8736 0.8328 9.8107 23 6 4.2172 0.8589 11.1781 24 6 4.6237 -0.3823 11.5064 25 8 4.5417 -1.1644 10.4164 26 6 4.0928 -2.2170 7.6538 27 16 3.6961 -2.4010 5.9468 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 2.5433 0.8919 4.7804 34 1 3.5117 1.6623 9.2214 35 1 4.1677 1.7135 11.8365 36 1 4.9599 -0.6971 12.4833 37 1 4.4636 -2.9946 8.3052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354420393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:21 Heat of formation + Delta-G solvation = -15.777874 kcal Electronic energy + Delta-G solvation = -24600.154382 eV Core-core repulsion = 20664.103150 eV Total energy + Delta-G solvation = -3936.051232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.49701 -42.23723 -40.70280 -39.83079 -37.20055 -36.28996 -34.37759 -33.97327 -32.11799 -31.14263 -29.59475 -27.45391 -27.24900 -25.34877 -23.31762 -22.72148 -22.58888 -21.77091 -21.06135 -19.99996 -19.41104 -18.33211 -18.10932 -17.82609 -17.51526 -17.31561 -17.08605 -16.99600 -16.14236 -15.96558 -15.87782 -15.16805 -14.90726 -14.50211 -14.44371 -14.13314 -13.81871 -13.77384 -13.50581 -13.29274 -13.06464 -12.90819 -12.75643 -12.55268 -12.31951 -12.24945 -12.11609 -11.16915 -11.06939 -10.96216 -10.91773 -10.62147 -10.53647 -10.13502 -10.03059 -8.89612 -8.19441 -6.36534 -0.74910 -0.19147 -0.00683 0.56298 0.60339 0.78204 1.48185 1.48840 1.49816 1.56807 1.75743 1.90894 2.13564 2.35281 2.50599 3.11797 3.31014 3.46655 3.83158 4.05671 4.11567 4.25932 4.42133 4.67963 4.70606 4.88873 4.90537 5.00716 5.01353 5.10123 5.23242 5.26706 5.45612 5.54382 5.61699 5.78086 6.02764 6.03842 6.12048 6.45172 6.57216 6.66484 6.99282 7.35240 8.86281 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.002071 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.791634 B =13519.171638 C =14071.110954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.268 3.732 3 H 0.018 0.982 4 C -0.552 4.552 5 H 0.073 0.927 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.266 1.266 12 N -0.663 5.663 13 C 0.507 3.493 14 O -0.548 6.548 15 C 0.525 3.475 16 O -0.488 6.488 17 N -0.589 5.589 18 C 0.262 3.738 19 N -0.500 5.500 20 C 0.138 3.862 21 C 0.018 3.982 22 C -0.176 4.176 23 C -0.226 4.226 24 C -0.017 4.017 25 O -0.179 6.179 26 C -0.269 4.269 27 S 0.237 5.763 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.022 0.978 31 H 0.267 0.733 32 H 0.414 0.586 33 H 0.441 0.559 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.251 0.749 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -5.863 25.302 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.166 3.834 3 H 0.036 0.964 4 C -0.590 4.590 5 H 0.092 0.908 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.211 1.211 10 H -0.197 1.197 11 H -0.191 1.191 12 N -0.312 5.312 13 C 0.286 3.714 14 O -0.428 6.428 15 C 0.305 3.695 16 O -0.361 6.361 17 N -0.241 5.241 18 C -0.106 4.106 19 N -0.223 5.223 20 C 0.008 3.992 21 C -0.034 4.034 22 C -0.197 4.197 23 C -0.245 4.245 24 C -0.085 4.085 25 O -0.075 6.075 26 C -0.410 4.410 27 S 0.488 5.512 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.250 0.750 33 H 0.284 0.716 34 H 0.167 0.833 35 H 0.193 0.807 36 H 0.267 0.733 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.655 -6.334 24.293 25.973 hybrid contribution 0.127 0.722 -0.090 0.739 sum 6.783 -5.612 24.203 25.755 Atomic orbital electron populations 1.21945 0.97298 0.99993 1.00451 1.18676 0.91790 0.92529 0.80396 0.96375 1.21450 1.33108 1.13870 0.90546 0.90849 1.25714 0.94775 0.95554 1.02068 1.70009 1.36489 1.23575 1.24884 0.85410 0.78640 0.78692 0.77697 1.21119 1.19681 1.19087 1.46243 1.61388 1.14989 1.08609 1.19505 0.80661 0.86860 0.84393 1.90770 1.51132 1.16070 1.84781 1.20466 0.78319 0.86713 0.83970 1.90691 1.46739 1.15138 1.83518 1.42245 1.60862 1.15947 1.05002 1.23917 1.02164 0.95531 0.89027 1.65853 1.20946 1.37375 0.98160 1.16721 1.03258 0.89314 0.89907 1.19111 1.07419 0.90569 0.86305 1.22111 1.04380 0.96540 0.96620 1.22165 1.06782 1.00010 0.95561 1.25088 1.02810 0.89606 0.90951 1.84023 1.66050 1.39759 1.17621 1.27731 1.10504 1.00974 1.01778 1.85946 1.58880 1.04319 1.02030 0.90815 0.93936 0.95919 0.92342 0.74968 0.71619 0.83329 0.80680 0.73274 0.77619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.50 9.26 71.98 0.67 -5.83 16 2 C 0.27 12.98 2.56 44.24 0.11 13.09 16 3 H 0.02 1.02 7.58 -2.38 -0.02 1.00 16 4 C -0.55 -27.84 8.73 25.60 0.22 -27.62 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -49.68 11.32 21.45 0.24 -49.44 16 8 Si 0.97 40.60 29.54 68.60 2.03 42.63 16 9 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 12 N -0.66 -26.22 5.06 -447.59 -2.27 -28.49 16 13 C 0.51 18.69 7.85 87.22 0.68 19.37 16 14 O -0.55 -22.97 16.14 -3.29 -0.05 -23.02 16 15 C 0.52 15.89 7.84 87.22 0.68 16.57 16 16 O -0.49 -14.90 13.98 -3.33 -0.05 -14.95 16 17 N -0.59 -15.87 5.38 -311.27 -1.68 -17.55 16 18 C 0.26 6.96 8.37 179.30 1.50 8.46 16 19 N -0.50 -13.55 10.41 -187.29 -1.95 -15.50 16 20 C 0.14 3.42 6.65 40.77 0.27 3.69 16 21 C 0.02 0.41 7.08 24.27 0.17 0.58 16 22 C -0.18 -3.72 10.70 22.42 0.24 -3.48 16 23 C -0.23 -3.31 10.89 22.13 0.24 -3.07 16 24 C -0.02 -0.21 12.08 67.00 0.81 0.60 16 25 O -0.18 -3.37 10.59 -7.17 -0.08 -3.44 16 26 C -0.27 -5.55 11.08 67.04 0.74 -4.80 16 27 S 0.24 5.42 20.52 -56.49 -1.16 4.26 16 28 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.41 14.70 8.01 -92.71 -0.74 13.95 16 33 H 0.44 11.13 8.29 -92.71 -0.77 10.36 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -62.81 347.14 1.49 -61.32 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.35 Total: 25.14 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.80 Total: 19.05 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -5.65 Total: -110.97 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.18 Total: -41.42 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.16 Total: 4.26 kcal Total: -62.81 1.49 -61.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354420393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.539 kcal (2) G-P(sol) polarization free energy of solvation -62.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds