Wall clock time and date at job start Tue Mar 31 2020 18:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.50696 * 109.46819 * 120.00479 * 2 1 3 5 5 H 1.07999 * 120.00533 * 120.00398 * 4 2 1 6 6 C 1.37880 * 120.00086 * 299.99409 * 4 2 1 7 7 N 1.31514 * 120.00421 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99678 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47458 * 89.99807 * 8 6 4 10 10 H 1.48500 * 109.46835 * 209.99781 * 8 6 4 11 11 H 1.48499 * 109.47044 * 329.99555 * 8 6 4 12 12 N 1.46504 * 109.46934 * 239.99935 * 2 1 3 13 13 C 1.34777 * 119.99858 * 85.00674 * 12 2 1 14 14 O 1.21373 * 119.99808 * 359.97438 * 13 12 2 15 15 C 1.49292 * 119.99994 * 180.27497 * 13 12 2 16 16 O 1.21383 * 120.00132 * 359.71915 * 15 13 12 17 17 N 1.34775 * 119.99855 * 179.72511 * 15 13 12 18 18 C 1.38681 * 119.99864 * 179.97438 * 17 15 13 19 19 N 1.29692 * 125.27875 * 179.71497 * 18 17 15 20 20 C 1.32600 * 117.01838 * 179.77173 * 19 18 17 21 21 C 1.47781 * 122.35208 * 180.25120 * 20 19 18 22 22 C 1.35971 * 125.93353 * 0.02562 * 21 20 19 23 23 C 1.41015 * 106.73944 * 179.91471 * 22 21 20 24 24 C 1.34669 * 107.03397 * 0.35131 * 23 22 21 25 25 O 1.34407 * 108.67382 * 359.78407 * 24 23 22 26 26 C 1.34841 * 115.29176 * 0.52632 * 20 19 18 27 27 S 1.76095 * 125.27569 * 0.02562 * 18 17 15 28 28 H 1.08998 * 109.47434 * 299.99987 * 1 2 3 29 29 H 1.09001 * 109.46820 * 59.99475 * 1 2 3 30 30 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00278 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99825 * 264.99768 * 12 2 1 33 33 H 0.97000 * 120.00517 * 359.97438 * 17 15 13 34 34 H 1.07996 * 126.62591 * 0.03661 * 22 21 20 35 35 H 1.08005 * 126.48040 * 180.14146 * 23 22 21 36 36 H 1.07997 * 125.66116 * 179.74755 * 24 23 22 37 37 H 1.08007 * 125.89640 * 179.73185 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 2.1379 -0.8592 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9950 3.9068 11 1 0.8472 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8581 1.1593 -2.4117 15 6 2.6388 -0.7235 -3.5776 16 8 2.9275 -1.9012 -3.5232 17 7 2.7624 -0.0524 -4.7399 18 6 3.2197 -0.7074 -5.8735 19 7 3.3722 -0.1651 -7.0417 20 6 3.8264 -0.9449 -8.0132 21 6 4.0492 -0.4482 -9.3871 22 6 3.8287 0.8209 -9.8223 23 6 4.1748 0.8475 -11.1890 24 6 4.5773 -0.3947 -11.5183 25 8 4.5002 -1.1755 -10.4270 26 6 4.0651 -2.2244 -7.6608 27 16 3.6760 -2.4064 -5.9519 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9033 -0.5280 4.4375 32 1 2.2490 -1.6318 -1.1526 33 1 2.5315 0.8887 -4.7835 34 1 3.4615 1.6491 -9.2343 35 1 4.1233 1.7017 -11.8480 36 1 4.9068 -0.7111 -12.4969 37 1 4.4316 -3.0031 -8.3134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354420399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:25 Heat of formation + Delta-G solvation = 12.805139 kcal Electronic energy + Delta-G solvation = -24668.363967 eV Core-core repulsion = 20733.552188 eV Total energy + Delta-G solvation = -3934.811780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80726 -41.06106 -39.68339 -38.57296 -35.87453 -35.00565 -33.28602 -32.55291 -31.24972 -30.24437 -28.82035 -26.30305 -25.34085 -24.33649 -22.22528 -21.82830 -21.61699 -20.50262 -19.89465 -18.87310 -18.31982 -17.44110 -16.86378 -16.74769 -16.49995 -16.20629 -16.02078 -15.56127 -15.27191 -14.77061 -14.59855 -13.76277 -13.66167 -13.47827 -13.32605 -13.13630 -13.06361 -12.88684 -12.35580 -12.19102 -12.04223 -11.56243 -11.50227 -11.23961 -10.92452 -10.32600 -10.24717 -10.11565 -9.87002 -9.66343 -9.50785 -9.41587 -9.24786 -8.92969 -8.53511 -8.08405 -6.31140 -4.36124 0.20268 0.74785 0.99765 1.49254 1.55517 1.83695 2.19732 2.54872 2.91808 3.15117 3.25460 3.28186 3.29383 3.59839 4.20734 4.21783 4.60926 4.67906 4.72042 4.77918 5.01633 5.02227 5.29667 5.50667 5.64270 5.70206 5.80471 6.11854 6.15458 6.17302 6.32205 6.34144 6.61108 6.73028 6.80886 6.99295 7.22872 7.27580 7.37948 7.79995 8.24941 8.29803 8.67716 9.26401 10.80550 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.002145 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.183937 B =13050.888748 C =13668.435034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.542 4.542 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.261 1.261 12 N -0.655 5.655 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.510 3.490 16 O -0.482 6.482 17 N -0.598 5.598 18 C 0.283 3.717 19 N -0.491 5.491 20 C 0.158 3.842 21 C 0.048 3.952 22 C -0.165 4.165 23 C -0.214 4.214 24 C -0.033 4.033 25 O -0.170 6.170 26 C -0.286 4.286 27 S 0.227 5.773 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.269 0.731 32 H 0.411 0.589 33 H 0.438 0.562 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.207 0.793 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -0.802 -26.340 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.133 3.867 3 H 0.074 0.926 4 C -0.579 4.579 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.522 5.522 8 Si 0.714 3.286 9 H -0.201 1.201 10 H -0.219 1.219 11 H -0.186 1.186 12 N -0.304 5.304 13 C 0.284 3.716 14 O -0.404 6.404 15 C 0.292 3.708 16 O -0.353 6.353 17 N -0.250 5.250 18 C -0.086 4.086 19 N -0.214 5.214 20 C 0.027 3.973 21 C -0.004 4.004 22 C -0.185 4.185 23 C -0.233 4.233 24 C -0.101 4.101 25 O -0.066 6.066 26 C -0.427 4.427 27 S 0.478 5.522 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.247 0.753 33 H 0.280 0.720 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.224 0.776 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.086 -1.416 -25.233 25.460 hybrid contribution -0.461 1.339 -0.829 1.641 sum 2.626 -0.077 -26.061 26.193 Atomic orbital electron populations 1.22480 0.98483 1.01460 0.99799 1.19384 0.90691 0.94856 0.81815 0.92589 1.20957 1.33953 1.14851 0.88175 0.89775 1.24817 0.95408 0.96725 0.95417 1.69852 1.44325 1.39902 0.98130 0.86890 0.80587 0.83428 0.77696 1.20123 1.21933 1.18607 1.46159 1.60972 1.14880 1.08373 1.19196 0.81359 0.87136 0.83952 1.90782 1.50363 1.14871 1.84365 1.21202 0.78126 0.87103 0.84397 1.90708 1.45971 1.15196 1.83463 1.42457 1.61531 1.15846 1.05161 1.23843 1.00914 0.94813 0.89009 1.65886 1.21124 1.36644 0.97791 1.16467 1.02537 0.88766 0.89496 1.19117 1.05276 0.90000 0.86005 1.21908 1.04514 0.96956 0.95158 1.21850 1.06447 0.98547 0.96462 1.24153 1.05333 0.90173 0.90460 1.84026 1.66249 1.39211 1.17088 1.27478 1.12045 1.00943 1.02218 1.86062 1.59647 1.05267 1.01179 0.92867 0.94276 0.92316 0.92052 0.75348 0.72031 0.82663 0.83025 0.77640 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.96 37.16 0.33 -3.04 16 2 C 0.23 5.19 2.15 -69.08 -0.15 5.04 16 3 H 0.06 1.33 6.64 -51.93 -0.34 0.99 16 4 C -0.54 -13.91 9.31 -34.44 -0.32 -14.23 16 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.30 13.96 55.43 0.77 -24.53 16 8 Si 0.88 20.54 24.37 -169.99 -4.14 16.40 16 9 H -0.27 -6.17 6.87 56.52 0.39 -5.78 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 12 N -0.65 -12.21 5.06 -55.42 -0.28 -12.49 16 13 C 0.51 8.65 7.85 -11.66 -0.09 8.56 16 14 O -0.53 -9.97 16.14 5.48 0.09 -9.88 16 15 C 0.51 7.41 7.84 -11.66 -0.09 7.31 16 16 O -0.48 -7.30 13.98 5.47 0.08 -7.22 16 17 N -0.60 -7.65 5.38 -12.33 -0.07 -7.72 16 18 C 0.28 3.67 8.37 -87.61 -0.73 2.94 16 19 N -0.49 -6.47 10.41 -10.55 -0.11 -6.58 16 20 C 0.16 1.96 6.65 -84.84 -0.56 1.40 16 21 C 0.05 0.56 7.08 -36.49 -0.26 0.30 16 22 C -0.16 -1.74 10.70 -39.34 -0.42 -2.17 16 23 C -0.21 -1.74 10.89 -39.79 -0.43 -2.18 16 24 C -0.03 -0.24 12.08 29.47 0.36 0.11 16 25 O -0.17 -1.74 10.59 4.41 0.05 -1.69 16 26 C -0.29 -3.08 11.08 29.53 0.33 -2.75 16 27 S 0.23 2.65 20.52 -107.50 -2.21 0.45 16 28 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.41 7.14 8.01 -40.82 -0.33 6.81 16 33 H 0.44 5.07 8.29 -40.82 -0.34 4.73 16 34 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.15 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.18 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -30.16 340.32 -6.15 -36.31 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -3.32 Total: 8.44 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.14 Total: 3.39 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.32 Total: -51.32 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.21 Total: -18.79 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.14 Total: 16.40 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.21 Total: 0.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.16 -6.15 -36.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354420399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.113 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds