Wall clock time and date at job start Tue Mar 31 2020 18:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.50696 * 109.46819 * 120.00479 * 2 1 3 5 5 H 1.07999 * 120.00533 * 120.00398 * 4 2 1 6 6 C 1.37880 * 120.00086 * 299.99409 * 4 2 1 7 7 N 1.31514 * 120.00421 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99678 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47458 * 89.99807 * 8 6 4 10 10 H 1.48500 * 109.46835 * 209.99781 * 8 6 4 11 11 H 1.48499 * 109.47044 * 329.99555 * 8 6 4 12 12 N 1.46504 * 109.46934 * 239.99935 * 2 1 3 13 13 C 1.34777 * 119.99858 * 85.00674 * 12 2 1 14 14 O 1.21373 * 119.99808 * 359.97438 * 13 12 2 15 15 C 1.49292 * 119.99994 * 180.27497 * 13 12 2 16 16 O 1.21383 * 120.00132 * 359.71915 * 15 13 12 17 17 N 1.34775 * 119.99855 * 179.72511 * 15 13 12 18 18 C 1.38681 * 119.99864 * 179.97438 * 17 15 13 19 19 N 1.29692 * 125.27875 * 179.71497 * 18 17 15 20 20 C 1.32600 * 117.01838 * 179.77173 * 19 18 17 21 21 C 1.47781 * 122.35208 * 180.25120 * 20 19 18 22 22 C 1.35971 * 125.93353 * 0.02562 * 21 20 19 23 23 C 1.41015 * 106.73944 * 179.91471 * 22 21 20 24 24 C 1.34669 * 107.03397 * 0.35131 * 23 22 21 25 25 O 1.34407 * 108.67382 * 359.78407 * 24 23 22 26 26 C 1.34841 * 115.29176 * 0.52632 * 20 19 18 27 27 S 1.76095 * 125.27569 * 0.02562 * 18 17 15 28 28 H 1.08998 * 109.47434 * 299.99987 * 1 2 3 29 29 H 1.09001 * 109.46820 * 59.99475 * 1 2 3 30 30 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00278 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99825 * 264.99768 * 12 2 1 33 33 H 0.97000 * 120.00517 * 359.97438 * 17 15 13 34 34 H 1.07996 * 126.62591 * 0.03661 * 22 21 20 35 35 H 1.08005 * 126.48040 * 180.14146 * 23 22 21 36 36 H 1.07997 * 125.66116 * 179.74755 * 24 23 22 37 37 H 1.08007 * 125.89640 * 179.73185 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 2.1379 -0.8592 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9950 3.9068 11 1 0.8472 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8581 1.1593 -2.4117 15 6 2.6388 -0.7235 -3.5776 16 8 2.9275 -1.9012 -3.5232 17 7 2.7624 -0.0524 -4.7399 18 6 3.2197 -0.7074 -5.8735 19 7 3.3722 -0.1651 -7.0417 20 6 3.8264 -0.9449 -8.0132 21 6 4.0492 -0.4482 -9.3871 22 6 3.8287 0.8209 -9.8223 23 6 4.1748 0.8475 -11.1890 24 6 4.5773 -0.3947 -11.5183 25 8 4.5002 -1.1755 -10.4270 26 6 4.0651 -2.2244 -7.6608 27 16 3.6760 -2.4064 -5.9519 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9033 -0.5280 4.4375 32 1 2.2490 -1.6318 -1.1526 33 1 2.5315 0.8887 -4.7835 34 1 3.4615 1.6491 -9.2343 35 1 4.1233 1.7017 -11.8480 36 1 4.9068 -0.7111 -12.4969 37 1 4.4316 -3.0031 -8.3134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354420399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:24 Heat of formation + Delta-G solvation = -9.201086 kcal Electronic energy + Delta-G solvation = -24669.318229 eV Core-core repulsion = 20733.552188 eV Total energy + Delta-G solvation = -3935.766041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49798 -42.27404 -40.73181 -39.89742 -37.30899 -36.32556 -34.44650 -33.97425 -32.14659 -31.92089 -29.60560 -27.50477 -27.19113 -25.40281 -23.35321 -22.72978 -22.59127 -21.78666 -21.12314 -20.02170 -19.44493 -18.48131 -18.28543 -17.82961 -17.56308 -17.36511 -17.23633 -17.05981 -16.20822 -15.96686 -15.92716 -15.14505 -15.10609 -14.75996 -14.50159 -14.14330 -14.12944 -13.81790 -13.77398 -13.50977 -13.33210 -13.25908 -12.77412 -12.56038 -12.28230 -12.14135 -11.58560 -11.32968 -11.07277 -10.96280 -10.95804 -10.87718 -10.53972 -10.19654 -10.11413 -8.89898 -8.37261 -6.45653 -0.75528 -0.19319 -0.02826 0.55223 0.59050 0.75366 1.31771 1.39650 1.48046 1.49320 1.74324 1.86914 2.12629 2.27290 2.37784 2.98448 3.21487 3.46136 3.83061 4.05472 4.11431 4.25761 4.40266 4.41453 4.51757 4.63162 4.67652 4.90471 4.92995 5.00551 5.10060 5.12749 5.31095 5.32654 5.44293 5.54313 5.93394 6.04515 6.16474 6.43545 6.48271 6.59336 6.84196 7.21350 8.77699 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.002145 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.183937 B =13050.888748 C =13668.435034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.043 0.957 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.932 5.932 8 Si 0.940 3.060 9 H -0.259 1.259 10 H -0.295 1.295 11 H -0.252 1.252 12 N -0.660 5.660 13 C 0.513 3.487 14 O -0.542 6.542 15 C 0.524 3.476 16 O -0.488 6.488 17 N -0.587 5.587 18 C 0.262 3.738 19 N -0.498 5.498 20 C 0.139 3.861 21 C 0.018 3.982 22 C -0.175 4.175 23 C -0.226 4.226 24 C -0.017 4.017 25 O -0.179 6.179 26 C -0.270 4.270 27 S 0.235 5.765 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.271 0.729 32 H 0.416 0.584 33 H 0.443 0.557 34 H 0.150 0.850 35 H 0.176 0.824 36 H 0.251 0.749 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -0.479 -29.172 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.136 3.864 3 H 0.060 0.940 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.570 5.570 8 Si 0.767 3.233 9 H -0.184 1.184 10 H -0.222 1.222 11 H -0.176 1.176 12 N -0.310 5.310 13 C 0.292 3.708 14 O -0.420 6.420 15 C 0.304 3.696 16 O -0.361 6.361 17 N -0.239 5.239 18 C -0.106 4.106 19 N -0.222 5.222 20 C 0.008 3.992 21 C -0.034 4.034 22 C -0.196 4.196 23 C -0.245 4.245 24 C -0.085 4.085 25 O -0.075 6.075 26 C -0.410 4.410 27 S 0.486 5.514 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.285 0.715 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.267 0.733 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.771 -1.090 -28.119 28.276 hybrid contribution -0.252 1.197 -0.155 1.233 sum 2.519 0.107 -28.274 28.386 Atomic orbital electron populations 1.22388 0.96821 1.02248 1.00324 1.19073 0.91887 0.93726 0.81681 0.93966 1.21178 1.32889 1.13876 0.89798 0.92582 1.25597 0.96820 0.99566 0.95170 1.69977 1.46362 1.41924 0.98756 0.85986 0.79641 0.80061 0.77634 1.18439 1.22233 1.17630 1.45938 1.61709 1.15121 1.08184 1.19408 0.80417 0.86791 0.84194 1.90772 1.50780 1.15658 1.84804 1.20411 0.78430 0.86715 0.84028 1.90719 1.46521 1.15267 1.83587 1.42208 1.61033 1.15937 1.04730 1.23902 1.02229 0.95507 0.88952 1.65846 1.20918 1.37375 0.98025 1.16715 1.03161 0.89334 0.89951 1.19120 1.07443 0.90638 0.86229 1.22112 1.04273 0.96616 0.96580 1.22168 1.06754 0.99967 0.95635 1.25082 1.02863 0.89609 0.90944 1.84024 1.66317 1.39712 1.17446 1.27727 1.10548 1.00961 1.01777 1.86011 1.59218 1.04312 1.01866 0.93446 0.92506 0.91493 0.91957 0.74707 0.71479 0.83226 0.80677 0.73334 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.29 8.96 71.98 0.65 -5.65 16 2 C 0.24 10.48 2.15 44.24 0.10 10.57 16 3 H 0.04 1.98 6.64 -2.39 -0.02 1.97 16 4 C -0.54 -28.07 9.31 25.60 0.24 -27.83 16 5 H 0.06 3.16 7.98 -2.91 -0.02 3.14 16 6 C 0.03 1.55 5.45 84.66 0.46 2.01 16 7 N -0.93 -54.35 13.96 21.45 0.30 -54.05 16 8 Si 0.94 41.99 24.37 68.60 1.67 43.66 16 9 H -0.26 -10.84 6.87 99.48 0.68 -10.16 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.25 -10.80 6.53 99.48 0.65 -10.15 16 12 N -0.66 -24.34 5.06 -447.59 -2.27 -26.61 16 13 C 0.51 17.16 7.85 87.22 0.68 17.84 16 14 O -0.54 -20.00 16.14 -3.32 -0.05 -20.05 16 15 C 0.52 14.79 7.84 87.22 0.68 15.48 16 16 O -0.49 -14.41 13.98 -3.35 -0.05 -14.46 16 17 N -0.59 -14.63 5.38 -311.27 -1.68 -16.31 16 18 C 0.26 6.63 8.37 179.30 1.50 8.13 16 19 N -0.50 -12.90 10.41 -187.30 -1.95 -14.85 16 20 C 0.14 3.32 6.65 40.77 0.27 3.59 16 21 C 0.02 0.39 7.08 24.27 0.17 0.57 16 22 C -0.18 -3.56 10.70 22.42 0.24 -3.32 16 23 C -0.23 -3.18 10.89 22.13 0.24 -2.94 16 24 C -0.02 -0.20 12.08 67.00 0.81 0.61 16 25 O -0.18 -3.29 10.59 -7.15 -0.08 -3.37 16 26 C -0.27 -5.42 11.08 67.04 0.74 -4.67 16 27 S 0.24 5.23 20.52 -56.49 -1.16 4.07 16 28 H 0.05 1.92 3.27 -2.39 -0.01 1.91 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.42 14.45 8.01 -92.71 -0.74 13.71 16 33 H 0.44 10.00 8.29 -92.71 -0.77 9.23 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 36 H 0.25 0.39 8.06 -2.91 -0.02 0.36 16 37 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -65.15 340.32 1.11 -64.05 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.42 Total: 23.52 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.79 Total: 14.39 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -5.59 Total: -111.81 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.18 Total: -37.87 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.67 Total: 43.66 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.16 Total: 4.07 kcal Total: -65.15 1.11 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354420399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.844 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds