Wall clock time and date at job start Tue Mar 31 2020 18:54:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 O 1.42099 * 110.54501 * 2 1
4 4 O 1.42100 * 110.54332 * 223.25082 * 2 1 3
5 5 C 1.76195 * 104.44967 * 111.62724 * 2 1 3
6 6 C 1.38137 * 120.04114 * 115.29777 * 5 2 1
7 7 C 1.38255 * 120.07345 * 180.29811 * 6 5 2
8 8 C 1.38315 * 120.13310 * 359.67412 * 7 6 5
9 9 C 1.38082 * 120.06869 * 0.02832 * 8 7 6
10 10 C 1.38841 * 120.03210 * 294.99667 * 5 2 1
11 11 N 1.40128 * 120.06587 * 359.97438 * 10 5 2
12 12 C 1.35963 * 126.02711 * 179.72367 * 11 10 5
13 13 C 1.36140 * 107.48605 * 180.02562 * 12 11 10
14 14 N 1.40091 * 126.12930 * 179.97438 * 13 12 11
15 15 C 1.34774 * 120.00106 * 180.02562 * 14 13 12
16 16 O 1.21784 * 120.00000 * 0.02562 * 15 14 13
17 17 C 1.41788 * 120.00182 * 179.97438 * 15 14 13
18 18 H 1.07997 * 119.99592 * 359.72789 * 17 15 14
19 19 C 1.40135 * 120.00068 * 180.02562 * 17 15 14
20 20 N 1.30633 * 120.00038 * 359.72948 * 19 17 15
21 21 Si 1.86798 * 119.99743 * 179.73008 * 19 17 15
22 22 H 1.48498 * 109.47416 * 59.99925 * 21 19 17
23 23 H 1.48508 * 109.46609 * 180.02562 * 21 19 17
24 24 H 1.48503 * 109.46903 * 299.99510 * 21 19 17
25 25 C 1.40491 * 107.74199 * 0.22971 * 13 12 11
26 26 N 1.30796 * 108.35105 * 359.61483 * 25 13 12
27 27 H 1.09002 * 109.46957 * 308.38007 * 1 2 3
28 28 H 1.09001 * 109.47277 * 68.37420 * 1 2 3
29 29 H 1.08994 * 109.47484 * 188.37638 * 1 2 3
30 30 H 1.08007 * 119.96249 * 0.02562 * 6 5 2
31 31 H 1.07998 * 119.93830 * 179.70028 * 7 6 5
32 32 H 1.07999 * 119.96419 * 180.02562 * 8 7 6
33 33 H 1.08007 * 120.03600 * 180.02562 * 9 8 7
34 34 H 1.07995 * 126.25547 * 0.02562 * 12 11 10
35 35 H 0.96998 * 120.00364 * 359.97438 * 14 13 12
36 36 H 0.96990 * 120.00337 * 180.02562 * 20 19 17
37 37 H 1.08004 * 125.82726 * 179.73154 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9117
5 6 2.2536 -0.6289 1.5861
6 6 2.9210 -1.8337 1.6916
7 6 3.2609 -2.3307 2.9362
8 6 2.9400 -1.6205 4.0788
9 6 2.2783 -0.4126 3.9796
10 6 1.9352 0.0892 2.7310
11 7 1.2643 1.3150 2.6269
12 6 0.8901 2.1122 3.6628
13 6 0.2682 3.2026 3.1358
14 7 -0.2733 4.2741 3.8579
15 6 -0.8650 5.2950 3.2067
16 8 -0.9295 5.2858 1.9906
17 6 -1.4135 6.3792 3.9376
18 1 -1.3610 6.3847 5.0162
19 6 -2.0292 7.4404 3.2605
20 7 -2.0932 7.4334 1.9558
21 14 -2.7585 8.8651 4.2238
22 1 -1.6918 9.5200 5.0228
23 1 -3.3471 9.8501 3.2811
24 1 -3.8171 8.3573 5.1332
25 6 0.2614 3.0579 1.7384
26 7 0.8603 1.9347 1.4378
27 1 -0.3633 0.6381 0.8056
28 1 -0.3634 0.3787 -0.9553
29 1 -0.3634 -1.0166 0.1497
30 1 3.1737 -2.3902 0.8011
31 1 3.7784 -3.2753 3.0164
32 1 3.2071 -2.0111 5.0496
33 1 2.0284 0.1418 4.8722
34 1 1.0559 1.9163 4.7118
35 1 -0.2230 4.2809 4.8265
36 1 -2.5191 8.1681 1.4871
37 1 -0.1639 3.7561 1.0326
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356610468.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:54:58
Heat of formation + Delta-G solvation = 47.473302 kcal
Electronic energy + Delta-G solvation = -26403.109229 eV
Core-core repulsion = 22469.800774 eV
Total energy + Delta-G solvation = -3933.308455 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.077 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.34356 -39.17548 -37.64909 -36.70979 -35.53468 -33.96842 -32.91875 -32.49104
-31.60214 -29.90427 -28.88124 -28.42491 -26.42950 -23.68570 -23.30825 -21.43534
-20.77362 -19.77614 -18.76038 -18.12407 -17.41546 -16.90852 -16.08291 -15.76169
-15.64453 -15.42494 -15.31677 -14.95727 -14.79633 -14.39697 -14.17228 -13.49777
-13.29066 -13.08672 -13.05862 -12.66470 -12.53403 -12.51776 -12.25914 -11.73084
-11.72076 -11.67666 -11.42402 -11.20013 -10.88756 -10.72278 -10.50867 -10.44010
-10.35439 -10.09399 -9.56260 -9.48081 -9.00924 -8.48584 -7.86147 -6.91810
-6.45948 -4.98273 0.32806 0.62035 0.91960 2.25622 2.45152 3.01448
3.08675 3.10208 3.10926 3.27275 3.40686 3.91413 4.07108 4.33716
4.37275 4.43031 4.67815 4.69413 4.90191 4.98820 5.01193 5.07360
5.30371 5.39668 5.48914 5.55011 5.64569 5.76759 5.90647 5.96385
6.01731 6.12960 6.24090 6.50117 6.96249 7.17023 7.25433 7.62924
7.87856 7.92412 8.04173 8.72347 9.17877 10.28969 10.48002
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.023015 B = 0.003117 C = 0.002802
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.322196 B = 8980.676521 C = 9989.115702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.641 4.641
2 S 2.519 3.481
3 O -0.903 6.903
4 O -0.965 6.965
5 C -0.688 4.688
6 C 0.003 3.997
7 C -0.173 4.173
8 C -0.038 4.038
9 C -0.176 4.176
10 C 0.291 3.709
11 N -0.358 5.358
12 C -0.056 4.056
13 C 0.092 3.908
14 N -0.673 5.673
15 C 0.547 3.453
16 O -0.570 6.570
17 C -0.536 4.536
18 H 0.071 0.929
19 C 0.088 3.912
20 N -0.745 5.745
21 Si 0.914 3.086
22 H -0.266 1.266
23 H -0.278 1.278
24 H -0.266 1.266
25 C 0.090 3.910
26 N -0.289 5.289
27 H 0.147 0.853
28 H 0.127 0.873
29 H 0.114 0.886
30 H 0.148 0.852
31 H 0.132 0.868
32 H 0.135 0.865
33 H 0.137 0.863
34 H 0.174 0.826
35 H 0.394 0.606
36 H 0.275 0.725
37 H 0.224 0.776
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.352 -16.723 4.481 18.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.792 4.792
2 S 2.696 3.304
3 O -0.899 6.899
4 O -0.962 6.962
5 C -0.775 4.775
6 C -0.016 4.016
7 C -0.192 4.192
8 C -0.057 4.057
9 C -0.198 4.198
10 C 0.192 3.808
11 N -0.138 5.138
12 C -0.196 4.196
13 C -0.015 4.015
14 N -0.316 5.316
15 C 0.357 3.643
16 O -0.454 6.454
17 C -0.571 4.571
18 H 0.089 0.911
19 C -0.135 4.135
20 N -0.372 5.372
21 Si 0.738 3.262
22 H -0.190 1.190
23 H -0.203 1.203
24 H -0.191 1.191
25 C -0.100 4.100
26 N -0.108 5.108
27 H 0.165 0.835
28 H 0.146 0.854
29 H 0.133 0.867
30 H 0.166 0.834
31 H 0.150 0.850
32 H 0.153 0.847
33 H 0.155 0.845
34 H 0.191 0.809
35 H 0.227 0.773
36 H 0.086 0.914
37 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges 6.101 -16.973 1.916 18.137
hybrid contribution -0.934 1.017 2.624 2.965
sum 5.167 -15.956 4.540 17.375
Atomic orbital electron populations
1.30392 1.25410 1.10609 1.12786 1.04660 0.78056 0.74380 0.73265
1.93649 1.76874 1.34934 1.84453 1.93503 1.78506 1.63004 1.61195
1.30374 1.18894 1.07709 1.20570 1.20875 0.90274 0.91362 0.99073
1.21215 1.04214 1.01495 0.92323 1.21205 0.92811 0.92558 0.99114
1.20867 1.04735 0.98575 0.95602 1.16840 0.88794 0.81454 0.93711
1.45538 1.47082 1.15538 1.05614 1.21618 1.09746 0.94443 0.93821
1.18155 1.00451 0.90817 0.92105 1.43696 1.59584 1.19400 1.08941
1.17042 0.78595 0.81030 0.87670 1.90505 1.62261 1.78772 1.13882
1.19958 1.38497 1.04214 0.94456 0.91098 1.25747 0.94235 0.98800
0.94737 1.69974 1.30087 1.29173 1.07936 0.86316 0.79722 0.80219
0.79929 1.19033 1.20306 1.19064 1.25169 0.94841 0.94066 0.95914
1.77299 1.18101 1.12191 1.03248 0.83537 0.85406 0.86733 0.83434
0.84985 0.84749 0.84536 0.80924 0.77262 0.91430 0.76046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.64 -8.02 10.08 101.05 1.02 -7.00 16
2 S 2.52 37.55 5.14 -107.50 -0.55 36.99 16
3 O -0.90 -17.26 14.61 -57.54 -0.84 -18.10 16
4 O -0.97 -15.32 16.74 -57.54 -0.96 -16.28 16
5 C -0.69 -9.54 5.59 -39.40 -0.22 -9.76 16
6 C 0.00 0.04 9.50 -39.61 -0.38 -0.34 16
7 C -0.17 -1.58 10.04 -39.55 -0.40 -1.98 16
8 C -0.04 -0.34 10.04 -39.61 -0.40 -0.73 16
9 C -0.18 -1.96 9.46 -39.40 -0.37 -2.33 16
10 C 0.29 4.17 6.63 -83.60 -0.55 3.62 16
11 N -0.36 -5.97 3.73 -10.34 -0.04 -6.01 16
12 C -0.06 -0.90 10.87 -16.48 -0.18 -1.08 16
13 C 0.09 1.82 6.90 -83.99 -0.58 1.24 16
14 N -0.67 -14.01 5.44 -12.61 -0.07 -14.08 16
15 C 0.55 14.20 7.54 -14.90 -0.11 14.09 16
16 O -0.57 -16.51 12.01 5.11 0.06 -16.45 16
17 C -0.54 -13.77 9.31 -37.51 -0.35 -14.12 16
18 H 0.07 1.64 7.85 -52.49 -0.41 1.22 16
19 C 0.09 2.26 5.50 -17.35 -0.10 2.16 16
20 N -0.74 -20.49 11.73 55.55 0.65 -19.84 16
21 Si 0.91 18.51 29.56 -169.99 -5.02 13.49 16
22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16
23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16
24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16
25 C 0.09 1.88 10.83 -17.14 -0.19 1.69 16
26 N -0.29 -5.45 3.85 30.75 0.12 -5.34 16
27 H 0.15 2.12 5.41 -51.92 -0.28 1.84 16
28 H 0.13 1.40 8.14 -51.92 -0.42 0.97 16
29 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16
30 H 0.15 1.49 7.21 -52.48 -0.38 1.11 16
31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16
32 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16
33 H 0.14 1.24 6.75 -52.48 -0.35 0.88 16
34 H 0.17 2.04 7.06 -52.49 -0.37 1.67 16
35 H 0.39 6.82 8.78 -40.82 -0.36 6.46 16
36 H 0.27 6.86 8.29 -40.82 -0.34 6.52 16
37 H 0.22 5.12 5.90 -52.48 -0.31 4.81 16
LS Contribution 326.08 15.07 4.91 4.91
Total: -1.00 -35.33 326.08 -7.83 -43.17
By element:
Atomic # 1 Polarization: 15.35 SS G_CDS: -3.29 Total: 12.06 kcal
Atomic # 6 Polarization: -11.73 SS G_CDS: -2.80 Total: -14.53 kcal
Atomic # 7 Polarization: -45.93 SS G_CDS: 0.66 Total: -45.26 kcal
Atomic # 8 Polarization: -49.09 SS G_CDS: -1.74 Total: -50.83 kcal
Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal
Atomic # 16 Polarization: 37.55 SS G_CDS: -0.55 Total: 36.99 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -35.33 -7.83 -43.17 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356610468.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.639 kcal
(2) G-P(sol) polarization free energy of solvation -35.333 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.306 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds