Wall clock time and date at job start Tue Mar 31 2020 18:54:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 O 1.42099 * 110.54501 * 2 1
4 4 O 1.42100 * 110.54332 * 223.25082 * 2 1 3
5 5 C 1.76195 * 104.44967 * 111.62724 * 2 1 3
6 6 C 1.38137 * 120.04114 * 115.29777 * 5 2 1
7 7 C 1.38255 * 120.07345 * 180.29811 * 6 5 2
8 8 C 1.38315 * 120.13310 * 359.67412 * 7 6 5
9 9 C 1.38082 * 120.06869 * 0.02832 * 8 7 6
10 10 C 1.38841 * 120.03210 * 294.99667 * 5 2 1
11 11 N 1.40128 * 120.06587 * 359.97438 * 10 5 2
12 12 C 1.35963 * 126.02711 * 179.72367 * 11 10 5
13 13 C 1.36140 * 107.48605 * 180.02562 * 12 11 10
14 14 N 1.40091 * 126.12930 * 179.97438 * 13 12 11
15 15 C 1.34774 * 120.00106 * 180.02562 * 14 13 12
16 16 O 1.21784 * 120.00000 * 0.02562 * 15 14 13
17 17 C 1.41788 * 120.00182 * 179.97438 * 15 14 13
18 18 H 1.07997 * 119.99592 * 359.72789 * 17 15 14
19 19 C 1.40135 * 120.00068 * 180.02562 * 17 15 14
20 20 N 1.30633 * 120.00038 * 359.72948 * 19 17 15
21 21 Si 1.86798 * 119.99743 * 179.73008 * 19 17 15
22 22 H 1.48498 * 109.47416 * 59.99925 * 21 19 17
23 23 H 1.48508 * 109.46609 * 180.02562 * 21 19 17
24 24 H 1.48503 * 109.46903 * 299.99510 * 21 19 17
25 25 C 1.40491 * 107.74199 * 0.22971 * 13 12 11
26 26 N 1.30796 * 108.35105 * 359.61483 * 25 13 12
27 27 H 1.09002 * 109.46957 * 308.38007 * 1 2 3
28 28 H 1.09001 * 109.47277 * 68.37420 * 1 2 3
29 29 H 1.08994 * 109.47484 * 188.37638 * 1 2 3
30 30 H 1.08007 * 119.96249 * 0.02562 * 6 5 2
31 31 H 1.07998 * 119.93830 * 179.70028 * 7 6 5
32 32 H 1.07999 * 119.96419 * 180.02562 * 8 7 6
33 33 H 1.08007 * 120.03600 * 180.02562 * 9 8 7
34 34 H 1.07995 * 126.25547 * 0.02562 * 12 11 10
35 35 H 0.96998 * 120.00364 * 359.97438 * 14 13 12
36 36 H 0.96990 * 120.00337 * 180.02562 * 20 19 17
37 37 H 1.08004 * 125.82726 * 179.73154 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9117
5 6 2.2536 -0.6289 1.5861
6 6 2.9210 -1.8337 1.6916
7 6 3.2609 -2.3307 2.9362
8 6 2.9400 -1.6205 4.0788
9 6 2.2783 -0.4126 3.9796
10 6 1.9352 0.0892 2.7310
11 7 1.2643 1.3150 2.6269
12 6 0.8901 2.1122 3.6628
13 6 0.2682 3.2026 3.1358
14 7 -0.2733 4.2741 3.8579
15 6 -0.8650 5.2950 3.2067
16 8 -0.9295 5.2858 1.9906
17 6 -1.4135 6.3792 3.9376
18 1 -1.3610 6.3847 5.0162
19 6 -2.0292 7.4404 3.2605
20 7 -2.0932 7.4334 1.9558
21 14 -2.7585 8.8651 4.2238
22 1 -1.6918 9.5200 5.0228
23 1 -3.3471 9.8501 3.2811
24 1 -3.8171 8.3573 5.1332
25 6 0.2614 3.0579 1.7384
26 7 0.8603 1.9347 1.4378
27 1 -0.3633 0.6381 0.8056
28 1 -0.3634 0.3787 -0.9553
29 1 -0.3634 -1.0166 0.1497
30 1 3.1737 -2.3902 0.8011
31 1 3.7784 -3.2753 3.0164
32 1 3.2071 -2.0111 5.0496
33 1 2.0284 0.1418 4.8722
34 1 1.0559 1.9163 4.7118
35 1 -0.2230 4.2809 4.8265
36 1 -2.5191 8.1681 1.4871
37 1 -0.1639 3.7561 1.0326
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356610468.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:54:57
Heat of formation + Delta-G solvation = 20.721512 kcal
Electronic energy + Delta-G solvation = -26404.269274 eV
Core-core repulsion = 22469.800774 eV
Total energy + Delta-G solvation = -3934.468500 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.077 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.67629 -40.22846 -39.34691 -37.98979 -36.83439 -35.53655 -34.50880 -34.12906
-32.54201 -31.11392 -29.98768 -29.88489 -28.13982 -24.75104 -24.40547 -23.02339
-22.02642 -21.23881 -19.94775 -19.38125 -19.11972 -18.04693 -17.58248 -17.14048
-16.96219 -16.75637 -16.62070 -16.08100 -15.88130 -15.70070 -15.43791 -14.90159
-14.79727 -14.47456 -14.19727 -14.06794 -13.83272 -13.62483 -13.37800 -13.17004
-13.02615 -13.01269 -12.76683 -12.64334 -12.52680 -12.05443 -12.03855 -11.75963
-11.62853 -11.41401 -10.95416 -10.82022 -10.42687 -9.83164 -9.62663 -8.42525
-8.34793 -6.94960 -0.77501 -0.44790 0.02586 1.06116 1.24771 1.43056
1.43526 1.57951 1.73651 2.00292 2.23933 2.48790 2.53046 2.92789
2.95729 3.33756 3.53596 3.72029 3.83942 3.86092 4.02034 4.07117
4.17308 4.24309 4.36786 4.48074 4.53533 4.65013 4.77807 4.94512
5.02288 5.17782 5.25983 5.33161 5.44177 5.67945 5.90958 6.06135
6.16852 6.33750 6.47183 6.78619 7.47196 8.42822 8.61119
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.023015 B = 0.003117 C = 0.002802
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.322196 B = 8980.676521 C = 9989.115702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.632 4.632
2 S 2.517 3.483
3 O -0.957 6.957
4 O -0.982 6.982
5 C -0.694 4.694
6 C -0.014 4.014
7 C -0.152 4.152
8 C -0.027 4.027
9 C -0.168 4.168
10 C 0.244 3.756
11 N -0.353 5.353
12 C -0.008 4.008
13 C 0.044 3.956
14 N -0.665 5.665
15 C 0.533 3.467
16 O -0.614 6.614
17 C -0.563 4.563
18 H 0.094 0.906
19 C 0.033 3.967
20 N -0.801 5.801
21 Si 0.999 3.001
22 H -0.254 1.254
23 H -0.276 1.276
24 H -0.252 1.252
25 C 0.049 3.951
26 N -0.290 5.290
27 H 0.130 0.870
28 H 0.139 0.861
29 H 0.147 0.853
30 H 0.155 0.845
31 H 0.172 0.828
32 H 0.182 0.818
33 H 0.163 0.837
34 H 0.225 0.775
35 H 0.411 0.589
36 H 0.278 0.722
37 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.360 -19.663 8.463 22.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.784 4.784
2 S 2.700 3.300
3 O -0.953 6.953
4 O -0.979 6.979
5 C -0.784 4.784
6 C -0.033 4.033
7 C -0.172 4.172
8 C -0.045 4.045
9 C -0.189 4.189
10 C 0.149 3.851
11 N -0.133 5.133
12 C -0.149 4.149
13 C -0.061 4.061
14 N -0.310 5.310
15 C 0.342 3.658
16 O -0.501 6.501
17 C -0.598 4.598
18 H 0.112 0.888
19 C -0.186 4.186
20 N -0.429 5.429
21 Si 0.819 3.181
22 H -0.178 1.178
23 H -0.201 1.201
24 H -0.176 1.176
25 C -0.139 4.139
26 N -0.111 5.111
27 H 0.148 0.852
28 H 0.157 0.843
29 H 0.166 0.834
30 H 0.173 0.827
31 H 0.189 0.811
32 H 0.199 0.801
33 H 0.181 0.819
34 H 0.242 0.758
35 H 0.247 0.753
36 H 0.088 0.912
37 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges 7.173 -19.996 5.886 22.044
hybrid contribution -1.031 1.466 1.434 2.295
sum 6.142 -18.531 7.319 20.849
Atomic orbital electron populations
1.30258 1.22905 1.12397 1.12882 1.04267 0.78833 0.73150 0.73766
1.93594 1.78541 1.37579 1.85607 1.93469 1.79390 1.62732 1.62348
1.30098 1.20109 1.08914 1.19287 1.21170 0.90447 0.90708 1.00949
1.21765 1.01847 1.02366 0.91183 1.21792 0.90603 0.91070 1.01076
1.21339 1.03437 0.99333 0.94818 1.17312 0.91270 0.81079 0.95456
1.45840 1.46252 1.16211 1.05000 1.22288 1.05215 0.91861 0.95582
1.18254 1.03887 0.92395 0.91613 1.43057 1.59537 1.18957 1.09487
1.17387 0.78758 0.82293 0.87398 1.90494 1.63812 1.80060 1.15765
1.20506 1.38888 1.04680 0.95707 0.88813 1.26980 0.94073 1.01884
0.95614 1.70148 1.31776 1.30608 1.10346 0.85034 0.79075 0.75841
0.78180 1.17830 1.20131 1.17610 1.24624 0.97491 0.95140 0.96613
1.77273 1.17872 1.11521 1.04438 0.85151 0.84285 0.83439 0.82701
0.81084 0.80104 0.81944 0.75820 0.75333 0.91175 0.79720
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.63 -16.17 10.08 113.37 1.14 -15.02 16
2 S 2.52 77.36 5.14 -56.49 -0.29 77.06 16
3 O -0.96 -39.12 14.61 -127.65 -1.86 -40.98 16
4 O -0.98 -31.70 16.74 -127.65 -2.14 -33.84 16
5 C -0.69 -18.28 5.59 22.39 0.13 -18.16 16
6 C -0.01 -0.27 9.50 22.25 0.21 -0.06 16
7 C -0.15 -1.94 10.04 22.29 0.22 -1.71 16
8 C -0.03 -0.30 10.04 22.25 0.22 -0.08 16
9 C -0.17 -2.89 9.46 22.39 0.21 -2.68 16
10 C 0.24 6.46 6.63 38.11 0.25 6.71 16
11 N -0.35 -11.54 3.73 -186.64 -0.70 -12.24 16
12 C -0.01 -0.23 10.87 83.56 0.91 0.68 16
13 C 0.04 1.81 6.90 37.88 0.26 2.07 16
14 N -0.67 -28.57 5.44 -311.98 -1.70 -30.27 16
15 C 0.53 29.20 7.54 85.12 0.64 29.84 16
16 O -0.61 -38.57 12.01 -4.62 -0.06 -38.63 16
17 C -0.56 -29.71 9.31 23.61 0.22 -29.49 16
18 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16
19 C 0.03 1.73 5.50 85.33 0.47 2.19 16
20 N -0.80 -46.53 11.73 21.85 0.26 -46.27 16
21 Si 1.00 38.34 29.56 68.60 2.03 40.37 16
22 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16
23 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16
24 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16
25 C 0.05 2.25 10.83 85.40 0.93 3.17 16
26 N -0.29 -11.57 3.85 -56.63 -0.22 -11.79 16
27 H 0.13 3.96 5.41 -2.39 -0.01 3.94 16
28 H 0.14 3.19 8.14 -2.39 -0.02 3.18 16
29 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16
30 H 0.16 2.78 7.21 -2.91 -0.02 2.76 16
31 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16
32 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16
33 H 0.16 1.90 6.75 -2.91 -0.02 1.88 16
34 H 0.23 4.22 7.06 -2.91 -0.02 4.20 16
35 H 0.41 14.12 8.78 -92.71 -0.81 13.30 16
36 H 0.28 14.68 8.29 -92.72 -0.77 13.91 16
37 H 0.19 9.78 5.90 -2.91 -0.02 9.77 16
Total: -1.00 -85.84 326.08 1.48 -84.35
By element:
Atomic # 1 Polarization: 34.42 SS G_CDS: 0.34 Total: 34.76 kcal
Atomic # 6 Polarization: -28.35 SS G_CDS: 5.82 Total: -22.53 kcal
Atomic # 7 Polarization: -98.21 SS G_CDS: -2.35 Total: -100.57 kcal
Atomic # 8 Polarization: -109.39 SS G_CDS: -4.06 Total: -113.45 kcal
Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal
Atomic # 16 Polarization: 77.36 SS G_CDS: -0.29 Total: 77.06 kcal
Total: -85.84 1.48 -84.35 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356610468.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.076 kcal
(2) G-P(sol) polarization free energy of solvation -85.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds